Wall clock time and date at job start Wed Apr 1 2020 03:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47169 * 2 1 4 4 N 1.46493 * 109.47185 * 120.00389 * 2 1 3 5 5 C 1.34772 * 119.99980 * 274.99822 * 4 2 1 6 6 O 1.21290 * 120.00135 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99978 * 180.02562 * 5 4 2 8 8 S 1.81008 * 109.47103 * 179.97438 * 7 5 4 9 9 C 1.76200 * 99.99956 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99872 * 0.02562 * 9 8 7 11 11 C 1.38798 * 119.99927 * 179.97438 * 9 8 7 12 12 N 1.31629 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00078 * 180.02562 * 11 9 8 14 14 H 1.48510 * 109.46998 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47376 * 120.00052 * 13 11 9 16 16 H 1.48498 * 109.47303 * 240.00384 * 13 11 9 17 17 C 1.53003 * 109.46768 * 240.00734 * 2 1 3 18 18 H 1.09004 * 109.46972 * 299.99787 * 17 2 1 19 19 C 1.53004 * 109.47114 * 180.02562 * 17 2 1 20 20 N 1.46894 * 109.47483 * 59.99679 * 17 2 1 21 21 C 1.46902 * 110.99953 * 205.00068 * 20 17 2 22 22 C 1.52999 * 109.47112 * 180.02562 * 21 20 17 23 23 N 1.46497 * 109.47130 * 179.97438 * 22 21 20 24 24 C 1.47057 * 125.40952 * 90.00073 * 23 22 21 25 25 C 1.54105 * 103.99235 * 179.97438 * 24 23 22 26 26 N 1.47394 * 103.70056 * 0.10684 * 25 24 23 27 27 C 1.33947 * 109.21036 * 359.88525 * 26 25 24 28 28 O 1.21594 * 123.03846 * 180.09410 * 27 26 25 29 29 H 1.08997 * 109.46644 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46715 * 299.99511 * 1 2 3 31 31 H 1.09000 * 109.47124 * 59.99912 * 1 2 3 32 32 H 0.96998 * 119.99825 * 95.00000 * 4 2 1 33 33 H 1.08995 * 109.47431 * 299.99741 * 7 5 4 34 34 H 1.09006 * 109.47029 * 60.00505 * 7 5 4 35 35 H 0.96994 * 120.00253 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.46427 * 299.99736 * 19 17 2 37 37 H 1.09000 * 109.47027 * 59.99201 * 19 17 2 38 38 H 1.08993 * 109.47371 * 179.97438 * 19 17 2 39 39 H 1.00900 * 111.00343 * 328.95145 * 20 17 2 40 40 H 1.09000 * 109.47307 * 59.99747 * 21 20 17 41 41 H 1.09002 * 109.47269 * 299.99863 * 21 20 17 42 42 H 1.09000 * 109.47340 * 59.99647 * 22 21 20 43 43 H 1.09001 * 109.47326 * 300.00216 * 22 21 20 44 44 H 1.09002 * 110.54831 * 298.59477 * 24 23 22 45 45 H 1.08997 * 110.54826 * 61.25951 * 24 23 22 46 46 H 1.08996 * 110.55034 * 118.66113 * 25 24 23 47 47 H 1.09001 * 110.54910 * 241.47819 * 25 24 23 48 48 H 0.97000 * 125.37712 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3570 6 8 1.8583 1.1583 2.4117 7 6 2.6501 -0.7287 3.5873 8 16 2.7116 0.4344 4.9728 9 6 3.3160 -0.6306 6.2397 10 1 3.5260 -1.6668 6.0195 11 6 3.5234 -0.1374 7.5205 12 7 3.2680 1.1257 7.7888 13 14 4.1649 -1.2663 8.8635 14 1 4.3704 -2.6285 8.3088 15 1 5.4551 -0.7407 9.3775 16 1 3.1785 -1.3273 9.9718 17 6 2.0400 -0.7211 -1.2494 18 1 1.6766 -1.7488 -1.2495 19 6 3.5700 -0.7217 -1.2491 20 7 1.5503 -0.0286 -2.4487 21 6 1.4874 -0.9436 -3.5962 22 6 0.9748 -0.1878 -4.8237 23 7 0.9127 -1.1002 -5.9682 24 6 -0.2492 -1.9204 -6.3420 25 6 0.2183 -2.6774 -7.6002 26 7 1.5995 -2.2031 -7.8000 27 6 1.9056 -1.3206 -6.8399 28 8 2.9868 -0.7692 -6.7666 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1524 33 1 1.9779 -1.5510 3.8324 34 1 3.6495 -1.1205 3.3977 35 1 3.4125 1.4702 8.6839 36 1 3.9337 0.3059 -1.2488 37 1 3.9330 -1.2358 -0.3592 38 1 3.9333 -1.2358 -2.1389 39 1 0.6526 0.3994 -2.2780 40 1 0.8111 -1.7673 -3.3676 41 1 2.4828 -1.3373 -3.8020 42 1 1.6515 0.6356 -5.0522 43 1 -0.0205 0.2063 -4.6183 44 1 -0.4955 -2.6211 -5.5442 45 1 -1.1063 -1.2874 -6.5719 46 1 0.2038 -3.7534 -7.4268 47 1 -0.4047 -2.4183 -8.4563 48 1 2.1922 -2.4846 -8.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328986693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:47 Heat of formation + Delta-G solvation = -81.209275 kcal Electronic energy + Delta-G solvation = -27108.540917 eV Core-core repulsion = 23130.813636 eV Total energy + Delta-G solvation = -3977.727281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90864 -40.92514 -38.86192 -37.42085 -36.28950 -34.74483 -34.57806 -32.52340 -31.17848 -30.10392 -29.73612 -28.24142 -27.64558 -24.88973 -23.85497 -23.61360 -21.71717 -21.60320 -21.04125 -19.82034 -18.65693 -17.99078 -17.83867 -17.28764 -17.10762 -16.88198 -16.76545 -16.42291 -16.06211 -15.50673 -15.29692 -15.18085 -14.82179 -14.72770 -14.70247 -14.54253 -14.45976 -14.07336 -13.86745 -13.55846 -13.23625 -13.15508 -13.07297 -12.94311 -12.91380 -12.75409 -12.61458 -12.48472 -12.36436 -12.09363 -11.72743 -11.59401 -11.36232 -11.15625 -10.93570 -10.36806 -10.26267 -10.13625 -9.53814 -9.40830 -8.65847 -8.34527 -6.12283 1.27048 1.41450 1.46760 1.56211 1.60401 1.63954 2.07451 2.23231 2.28522 2.98798 2.99766 3.29392 3.36098 3.56685 3.62631 3.87102 3.88382 3.99795 4.09594 4.17466 4.25969 4.31576 4.40267 4.44434 4.49832 4.51391 4.57890 4.68388 4.71156 4.76944 4.79255 4.90866 4.94957 5.00600 5.05858 5.15251 5.25650 5.34205 5.42478 5.47778 5.69440 5.97473 6.19060 6.20354 6.42366 6.51788 6.53251 7.07006 7.26999 7.55895 8.74962 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.032579 B = 0.001535 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.250699 B =18239.873842 C =18433.539477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.067 0.933 4 N -0.706 5.706 5 C 0.537 3.463 6 O -0.563 6.563 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.999 3.001 14 H -0.257 1.257 15 H -0.275 1.275 16 H -0.273 1.273 17 C 0.097 3.903 18 H 0.070 0.930 19 C -0.141 4.141 20 N -0.687 5.687 21 C 0.055 3.945 22 C 0.154 3.846 23 N -0.631 5.631 24 C 0.085 3.915 25 C 0.092 3.908 26 N -0.739 5.739 27 C 0.682 3.318 28 O -0.644 6.644 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.089 0.911 32 H 0.414 0.586 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.044 0.956 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.353 0.647 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.861 -14.058 -33.129 37.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.086 0.914 4 N -0.360 5.360 5 C 0.323 3.677 6 O -0.441 6.441 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.821 3.179 14 H -0.180 1.180 15 H -0.200 1.200 16 H -0.199 1.199 17 C -0.014 4.014 18 H 0.088 0.912 19 C -0.199 4.199 20 N -0.323 5.323 21 C -0.075 4.075 22 C 0.031 3.969 23 N -0.369 5.369 24 C -0.037 4.037 25 C -0.032 4.032 26 N -0.401 5.401 27 C 0.382 3.618 28 O -0.526 6.526 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.251 0.749 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.175 0.825 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.256 -11.365 -32.952 36.629 hybrid contribution 0.584 -2.418 0.874 2.637 sum -10.671 -13.783 -32.078 36.509 Atomic orbital electron populations 1.22200 0.94116 1.03106 1.02605 1.21030 0.94736 0.97021 0.83528 0.91431 1.45704 1.67660 1.14437 1.08200 1.20005 0.76628 0.86531 0.84530 1.90697 1.50600 1.17705 1.85121 1.23378 1.05477 1.03214 0.96046 1.85586 1.86637 1.17354 1.02808 1.23247 1.50797 0.98496 0.96873 0.89913 1.26120 0.95082 0.97180 1.00742 1.70188 1.46894 1.15477 1.22228 0.84907 0.77821 0.78223 0.77000 1.18031 1.20009 1.19879 1.21533 0.95719 0.96430 0.87683 0.91237 1.21797 0.94797 1.01776 1.01525 1.60304 1.34661 1.33549 1.03824 1.22240 1.00626 0.94401 0.90265 1.21097 1.03225 0.90334 0.82244 1.47153 1.14840 1.46546 1.28402 1.22748 0.89056 0.94548 0.97372 1.22711 0.81494 1.00651 0.98344 1.45249 1.17912 1.45994 1.30914 1.16364 0.83717 0.80508 0.81247 1.90946 1.25915 1.57402 1.78356 0.90682 0.94193 0.89285 0.74855 0.87140 0.87375 0.92004 0.93667 0.91816 0.92594 0.82470 0.93015 0.93098 0.91632 0.87107 0.88339 0.87850 0.87874 0.87663 0.72487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.25 71.98 0.67 -2.27 16 2 C 0.14 3.07 2.29 45.00 0.10 3.17 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.71 -17.22 4.38 -442.53 -1.94 -19.16 16 5 C 0.54 19.57 7.81 87.66 0.68 20.26 16 6 O -0.56 -26.02 15.53 -3.06 -0.05 -26.07 16 7 C -0.13 -5.11 6.16 71.24 0.44 -4.67 16 8 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 9 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.77 5.49 84.86 0.47 1.24 16 12 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 13 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 14 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 15 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 17 C 0.10 1.58 2.28 44.92 0.10 1.69 16 18 H 0.07 0.89 7.80 -2.39 -0.02 0.87 16 19 C -0.14 -2.81 9.26 71.98 0.67 -2.14 16 20 N -0.69 -10.23 6.31 -491.56 -3.10 -13.34 16 21 C 0.06 0.73 5.81 86.30 0.50 1.23 16 22 C 0.15 1.90 6.26 86.38 0.54 2.44 16 23 N -0.63 -7.67 2.96 -838.36 -2.48 -10.15 16 24 C 0.08 0.19 7.67 86.65 0.66 0.85 16 25 C 0.09 0.08 8.08 86.58 0.70 0.78 16 26 N -0.74 -7.36 6.39 -476.58 -3.04 -10.41 16 27 C 0.68 13.06 8.60 179.57 1.55 14.61 16 28 O -0.64 -19.80 17.53 -4.01 -0.07 -19.87 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.13 6.21 -2.39 -0.01 1.11 16 32 H 0.41 7.29 8.39 -92.71 -0.78 6.51 16 33 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 34 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 36 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.06 1.20 7.44 -2.39 -0.02 1.18 16 38 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 39 H 0.35 4.10 6.17 -89.69 -0.55 3.55 16 40 H 0.05 0.49 8.06 -2.39 -0.02 0.47 16 41 H 0.05 0.98 7.44 -2.39 -0.02 0.96 16 42 H 0.07 1.23 7.91 -2.39 -0.02 1.21 16 43 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 47 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 48 H 0.43 3.35 8.96 -92.71 -0.83 2.52 16 Total: -1.00 -89.89 407.17 -2.98 -92.87 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -1.17 Total: 19.33 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 7.72 Total: 6.54 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -10.28 Total: -108.98 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -0.12 Total: -45.94 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -89.89 -2.98 -92.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328986693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.661 kcal (2) G-P(sol) polarization free energy of solvation -89.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds