Wall clock time and date at job start Wed Apr 1 2020 03:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70386 * 2 1 4 4 C 1.52767 * 109.50560 * 239.88010 * 2 1 3 5 5 C 1.53040 * 109.38183 * 185.70782 * 4 2 1 6 6 F 1.39901 * 109.45930 * 301.22361 * 5 4 2 7 7 F 1.39892 * 109.44876 * 181.25654 * 5 4 2 8 8 C 1.53044 * 109.53706 * 61.23971 * 5 4 2 9 9 C 1.53189 * 109.31528 * 298.63344 * 8 5 4 10 10 N 1.46924 * 109.58658 * 120.35481 * 2 1 3 11 11 C 1.34772 * 120.63018 * 353.41872 * 10 2 1 12 12 O 1.21346 * 120.00290 * 4.40317 * 11 10 2 13 13 C 1.49457 * 119.99996 * 184.40868 * 11 10 2 14 14 O 1.21347 * 119.99979 * 274.70404 * 13 11 10 15 15 N 1.34776 * 119.99985 * 94.70372 * 13 11 10 16 16 C 1.46931 * 120.62976 * 354.71236 * 15 13 11 17 17 C 1.53624 * 108.54257 * 126.36800 * 16 15 13 18 18 C 1.53043 * 109.24247 * 54.85263 * 17 16 15 19 19 C 1.50708 * 109.45928 * 178.48934 * 18 17 16 20 20 H 1.07999 * 119.99815 * 120.07094 * 19 18 17 21 21 C 1.37876 * 120.00027 * 300.06920 * 19 18 17 22 22 N 1.31515 * 120.00182 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99912 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46767 * 60.00147 * 23 21 19 25 25 H 1.48499 * 109.47018 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47154 * 300.00379 * 23 21 19 27 27 C 1.53030 * 109.54060 * 298.50993 * 18 17 16 28 28 C 1.46922 * 120.63261 * 174.98844 * 15 13 11 29 29 H 1.09005 * 109.46410 * 303.23620 * 1 2 3 30 30 H 1.08995 * 109.46746 * 63.23134 * 1 2 3 31 31 H 1.08991 * 109.47096 * 183.23730 * 1 2 3 32 32 H 1.08995 * 109.56324 * 65.67606 * 4 2 1 33 33 H 1.09000 * 109.38781 * 305.63370 * 4 2 1 34 34 H 1.09001 * 109.49452 * 178.68370 * 8 5 4 35 35 H 1.08997 * 109.49708 * 58.59062 * 8 5 4 36 36 H 1.09004 * 109.58775 * 294.85115 * 9 8 5 37 37 H 1.09001 * 109.58983 * 174.42109 * 9 8 5 38 38 H 1.08994 * 109.58530 * 246.19612 * 16 15 13 39 39 H 1.08997 * 109.58636 * 6.62851 * 16 15 13 40 40 H 1.09002 * 109.63348 * 294.86232 * 17 16 15 41 41 H 1.09001 * 109.46271 * 174.74099 * 17 16 15 42 42 H 1.08999 * 109.45794 * 58.53444 * 18 17 16 43 43 H 0.96995 * 120.00266 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.50027 * 301.41347 * 27 18 17 45 45 H 1.08998 * 109.52664 * 181.32873 * 27 18 17 46 46 H 1.09007 * 109.58421 * 353.37335 * 28 15 13 47 47 H 1.08998 * 109.58728 * 113.65769 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2456 5 6 3.5638 -0.8463 -1.1727 6 9 4.1310 0.4291 -1.0789 7 9 4.0351 -1.4824 -2.3261 8 6 3.9522 -1.6688 0.0581 9 6 3.4645 -0.9520 1.3210 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1069 2.1531 12 8 -0.0282 -0.9689 1.9983 13 6 1.6916 -1.7287 3.4071 14 8 1.9338 -2.9173 3.4396 15 7 1.8952 -0.9692 4.5017 16 6 1.7174 0.4882 4.4453 17 6 0.7443 0.9051 5.5586 18 6 1.2631 0.3870 6.9020 19 6 0.3314 0.8249 8.0026 20 1 -0.1628 0.0871 8.6173 21 6 0.1099 2.1675 8.2249 22 7 0.7113 3.0660 7.4762 23 14 -1.0455 2.7103 9.5887 24 1 -0.5420 2.2090 10.8927 25 1 -1.1118 4.1935 9.6202 26 1 -2.4015 2.1598 9.3370 27 6 1.3308 -1.1415 6.8695 28 6 2.3051 -1.5822 5.7725 29 1 -0.3632 0.5633 0.8596 30 1 -0.3632 0.4628 -0.9175 31 1 -0.3633 -1.0259 0.0580 32 1 1.7632 -0.1566 -2.1349 33 1 1.5963 -1.7170 -1.2942 34 1 5.0362 -1.7763 0.0965 35 1 3.4904 -2.6543 -0.0023 36 1 3.9929 -0.0050 1.4309 37 1 3.6504 -1.5799 2.1925 38 1 2.6788 0.9796 4.5938 39 1 1.3070 0.7690 3.4754 40 1 -0.2407 0.4821 5.3614 41 1 0.6735 1.9923 5.5908 42 1 2.2584 0.7908 7.0870 43 1 0.5553 4.0105 7.6323 44 1 0.3403 -1.5452 6.6600 45 1 1.6779 -1.5114 7.8343 46 1 2.2827 -2.6679 5.6784 47 1 3.3146 -1.2581 6.0256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329329999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:38 Heat of formation + Delta-G solvation = -158.397463 kcal Electronic energy + Delta-G solvation = -32321.171300 eV Core-core repulsion = 27753.963751 eV Total energy + Delta-G solvation = -4567.207550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.31733 -47.30322 -41.16252 -39.21144 -37.27138 -36.98241 -33.69203 -33.37101 -32.43868 -31.35546 -30.22618 -28.16536 -26.67983 -25.29172 -24.52971 -22.99940 -22.55943 -22.10220 -21.05041 -19.57515 -18.50754 -17.78373 -17.59152 -17.09817 -16.77639 -16.64445 -16.39855 -16.16125 -15.44388 -15.34866 -14.61904 -14.37115 -14.18296 -14.04645 -13.84291 -13.65985 -13.35916 -13.25761 -13.19621 -12.94505 -12.89007 -12.80689 -12.73353 -12.61017 -12.42562 -12.16881 -11.83482 -11.75144 -11.48993 -11.41540 -10.95965 -10.94652 -10.73321 -10.71303 -10.48733 -10.14268 -9.70375 -9.28804 -9.13112 -9.09121 -8.96751 -8.45474 -8.25275 -6.07924 -4.14046 2.09125 2.15964 2.60189 3.25579 3.27881 3.32710 3.35823 3.41902 3.62270 3.90358 3.97485 4.19419 4.31420 4.37686 4.66716 4.69218 4.93466 5.01204 5.07976 5.16021 5.20803 5.22408 5.35488 5.39012 5.49504 5.56082 5.62187 5.76827 5.89807 5.91313 5.97639 5.99134 6.12572 6.25969 6.37517 6.52137 6.69621 6.86754 6.90810 7.02818 7.16252 7.50792 7.62838 7.72909 7.84175 7.94729 8.04782 8.33882 8.88773 9.51480 10.97744 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002866 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.842699 B = 9766.859643 C =10164.565307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.090 0.910 4 C -0.172 4.172 5 C 0.290 3.710 6 F -0.196 7.196 7 F -0.200 7.200 8 C -0.173 4.173 9 C 0.108 3.892 10 N -0.604 5.604 11 C 0.526 3.474 12 O -0.496 6.496 13 C 0.507 3.493 14 O -0.534 6.534 15 N -0.577 5.577 16 C 0.102 3.898 17 C -0.123 4.123 18 C 0.049 3.951 19 C -0.513 4.513 20 H 0.055 0.945 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.125 4.125 28 C 0.110 3.890 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.107 0.893 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -5.570 -17.084 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.044 3.956 3 H 0.108 0.892 4 C -0.211 4.211 5 C 0.254 3.746 6 F -0.177 7.177 7 F -0.181 7.181 8 C -0.212 4.212 9 C -0.015 4.015 10 N -0.340 5.340 11 C 0.309 3.691 12 O -0.369 6.369 13 C 0.289 3.711 14 O -0.412 6.412 15 N -0.310 5.310 16 C -0.020 4.020 17 C -0.162 4.162 18 C 0.031 3.969 19 C -0.552 4.552 20 H 0.073 0.927 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.163 4.163 28 C -0.011 4.011 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.645 -5.893 -17.161 19.323 hybrid contribution -0.438 0.455 0.514 0.814 sum 6.207 -5.438 -16.647 18.580 Atomic orbital electron populations 1.22258 0.91066 1.04441 1.01972 1.21248 0.97130 0.95475 0.81794 0.89244 1.23009 0.91859 1.05222 1.00997 1.21026 0.92315 0.77417 0.83862 1.93019 1.86921 1.41407 1.96382 1.93022 1.90286 1.82122 1.52627 1.22922 1.04622 1.00745 0.92879 1.21756 0.80010 1.01694 0.98057 1.48219 1.07347 1.57679 1.20800 1.20435 0.86864 0.77469 0.84305 1.90875 1.14837 1.52547 1.78619 1.20177 0.78823 0.87305 0.84805 1.90761 1.51779 1.14663 1.84007 1.48362 1.64099 1.08889 1.09671 1.22246 1.01436 0.77388 1.00941 1.22119 0.95698 1.04807 0.93559 1.18639 0.97163 0.88361 0.92749 1.21142 1.26823 0.91701 1.15486 0.92667 1.24952 0.95905 0.96773 0.96256 1.69807 1.43134 1.01058 1.39060 0.86660 0.81469 0.77390 0.82514 1.20290 1.21288 1.20294 1.22037 0.97816 1.00499 0.95946 1.21869 0.98612 0.98323 0.82316 0.89861 0.93036 0.90718 0.87896 0.88057 0.87727 0.87864 0.89316 0.88041 0.91022 0.91894 0.93820 0.87520 0.95306 0.92858 0.92695 0.91679 0.90029 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.59 37.16 0.28 -1.25 16 2 C 0.15 1.44 3.28 -67.82 -0.22 1.22 16 3 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 4 C -0.17 -1.40 4.88 -26.83 -0.13 -1.53 16 5 C 0.29 2.56 2.10 -26.69 -0.06 2.51 16 6 F -0.20 -1.96 16.11 2.25 0.04 -1.92 16 7 F -0.20 -1.99 17.06 2.25 0.04 -1.95 16 8 C -0.17 -1.38 5.62 -26.61 -0.15 -1.53 16 9 C 0.11 1.03 6.13 -3.71 -0.02 1.00 16 10 N -0.60 -7.03 2.98 -165.97 -0.49 -7.52 16 11 C 0.53 8.06 5.39 -11.58 -0.06 8.00 16 12 O -0.50 -8.65 12.50 5.50 0.07 -8.58 16 13 C 0.51 8.58 5.60 -11.58 -0.06 8.52 16 14 O -0.53 -10.00 16.34 5.50 0.09 -9.91 16 15 N -0.58 -9.80 2.97 -173.00 -0.51 -10.32 16 16 C 0.10 1.76 6.39 -3.48 -0.02 1.73 16 17 C -0.12 -2.67 5.17 -26.38 -0.14 -2.81 16 18 C 0.05 1.13 2.06 -91.73 -0.19 0.94 16 19 C -0.51 -13.35 8.56 -34.44 -0.29 -13.65 16 20 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 22 N -0.89 -23.90 11.30 55.43 0.63 -23.28 16 23 Si 0.89 20.60 29.54 -169.99 -5.02 15.57 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 28 C 0.11 1.84 6.42 -3.71 -0.02 1.82 16 29 H 0.08 1.10 6.69 -51.93 -0.35 0.76 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.93 6.81 -51.93 -0.35 0.58 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 37 H 0.10 1.06 6.23 -51.93 -0.32 0.73 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.02 6.31 -51.93 -0.33 0.70 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.11 2.57 6.03 -51.93 -0.31 2.26 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.08 1.34 7.04 -51.93 -0.37 0.97 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.43 15.07 5.58 5.58 Total: -1.00 -29.34 370.43 -7.96 -37.30 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.04 Total: 1.06 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -1.33 Total: 3.95 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: -0.38 Total: -41.11 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.16 Total: -18.48 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.07 Total: -3.87 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.34 -7.96 -37.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329329999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.093 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds