Wall clock time and date at job start Wed Apr 1 2020 03:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.70386 * 2 1 4 4 C 1.52767 * 109.50560 * 239.88010 * 2 1 3 5 5 C 1.53040 * 109.38183 * 185.70782 * 4 2 1 6 6 F 1.39901 * 109.45930 * 301.22361 * 5 4 2 7 7 F 1.39892 * 109.44876 * 181.25654 * 5 4 2 8 8 C 1.53044 * 109.53706 * 61.23971 * 5 4 2 9 9 C 1.53189 * 109.31528 * 298.63344 * 8 5 4 10 10 N 1.46924 * 109.58658 * 120.35481 * 2 1 3 11 11 C 1.34772 * 120.63018 * 353.41872 * 10 2 1 12 12 O 1.21346 * 120.00290 * 4.40317 * 11 10 2 13 13 C 1.49457 * 119.99996 * 184.40868 * 11 10 2 14 14 O 1.21347 * 119.99979 * 274.70404 * 13 11 10 15 15 N 1.34776 * 119.99985 * 94.70372 * 13 11 10 16 16 C 1.46931 * 120.62976 * 354.71236 * 15 13 11 17 17 C 1.53624 * 108.54257 * 126.36800 * 16 15 13 18 18 C 1.53043 * 109.24247 * 54.85263 * 17 16 15 19 19 C 1.50708 * 109.45928 * 178.48934 * 18 17 16 20 20 H 1.07999 * 119.99815 * 120.07094 * 19 18 17 21 21 C 1.37876 * 120.00027 * 300.06920 * 19 18 17 22 22 N 1.31515 * 120.00182 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99912 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46767 * 60.00147 * 23 21 19 25 25 H 1.48499 * 109.47018 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47154 * 300.00379 * 23 21 19 27 27 C 1.53030 * 109.54060 * 298.50993 * 18 17 16 28 28 C 1.46922 * 120.63261 * 174.98844 * 15 13 11 29 29 H 1.09005 * 109.46410 * 303.23620 * 1 2 3 30 30 H 1.08995 * 109.46746 * 63.23134 * 1 2 3 31 31 H 1.08991 * 109.47096 * 183.23730 * 1 2 3 32 32 H 1.08995 * 109.56324 * 65.67606 * 4 2 1 33 33 H 1.09000 * 109.38781 * 305.63370 * 4 2 1 34 34 H 1.09001 * 109.49452 * 178.68370 * 8 5 4 35 35 H 1.08997 * 109.49708 * 58.59062 * 8 5 4 36 36 H 1.09004 * 109.58775 * 294.85115 * 9 8 5 37 37 H 1.09001 * 109.58983 * 174.42109 * 9 8 5 38 38 H 1.08994 * 109.58530 * 246.19612 * 16 15 13 39 39 H 1.08997 * 109.58636 * 6.62851 * 16 15 13 40 40 H 1.09002 * 109.63348 * 294.86232 * 17 16 15 41 41 H 1.09001 * 109.46271 * 174.74099 * 17 16 15 42 42 H 1.08999 * 109.45794 * 58.53444 * 18 17 16 43 43 H 0.96995 * 120.00266 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.50027 * 301.41347 * 27 18 17 45 45 H 1.08998 * 109.52664 * 181.32873 * 27 18 17 46 46 H 1.09007 * 109.58421 * 353.37335 * 28 15 13 47 47 H 1.08998 * 109.58728 * 113.65769 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0401 -0.7226 -1.2456 5 6 3.5638 -0.8463 -1.1727 6 9 4.1310 0.4291 -1.0789 7 9 4.0351 -1.4824 -2.3261 8 6 3.9522 -1.6688 0.0581 9 6 3.4645 -0.9520 1.3210 10 7 2.0226 -0.6995 1.1945 11 6 1.1674 -1.1069 2.1531 12 8 -0.0282 -0.9689 1.9983 13 6 1.6916 -1.7287 3.4071 14 8 1.9338 -2.9173 3.4396 15 7 1.8952 -0.9692 4.5017 16 6 1.7174 0.4882 4.4453 17 6 0.7443 0.9051 5.5586 18 6 1.2631 0.3870 6.9020 19 6 0.3314 0.8249 8.0026 20 1 -0.1628 0.0871 8.6173 21 6 0.1099 2.1675 8.2249 22 7 0.7113 3.0660 7.4762 23 14 -1.0455 2.7103 9.5887 24 1 -0.5420 2.2090 10.8927 25 1 -1.1118 4.1935 9.6202 26 1 -2.4015 2.1598 9.3370 27 6 1.3308 -1.1415 6.8695 28 6 2.3051 -1.5822 5.7725 29 1 -0.3632 0.5633 0.8596 30 1 -0.3632 0.4628 -0.9175 31 1 -0.3633 -1.0259 0.0580 32 1 1.7632 -0.1566 -2.1349 33 1 1.5963 -1.7170 -1.2942 34 1 5.0362 -1.7763 0.0965 35 1 3.4904 -2.6543 -0.0023 36 1 3.9929 -0.0050 1.4309 37 1 3.6504 -1.5799 2.1925 38 1 2.6788 0.9796 4.5938 39 1 1.3070 0.7690 3.4754 40 1 -0.2407 0.4821 5.3614 41 1 0.6735 1.9923 5.5908 42 1 2.2584 0.7908 7.0870 43 1 0.5553 4.0105 7.6323 44 1 0.3403 -1.5452 6.6600 45 1 1.6779 -1.5114 7.8343 46 1 2.2827 -2.6679 5.6784 47 1 3.3146 -1.2581 6.0256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329329999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:37 Heat of formation + Delta-G solvation = -174.529550 kcal Electronic energy + Delta-G solvation = -32321.870840 eV Core-core repulsion = 27753.963751 eV Total energy + Delta-G solvation = -4567.907090 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.03483 -48.02789 -42.33432 -40.47172 -38.55485 -38.25309 -35.42568 -34.25093 -33.31592 -33.02787 -31.80720 -29.04341 -28.26909 -26.49503 -25.59715 -24.41655 -23.94513 -23.16917 -22.07111 -20.97420 -19.76829 -19.02857 -18.36937 -18.32176 -18.02945 -17.74089 -17.50892 -17.21774 -16.59405 -16.49580 -16.34574 -15.67195 -15.19697 -15.06331 -14.89883 -14.86890 -14.56799 -14.44008 -14.39824 -14.14738 -14.01204 -13.97519 -13.71696 -13.65319 -13.42369 -13.31196 -13.17861 -12.90363 -12.80799 -12.56440 -12.51154 -12.29081 -12.19934 -12.13085 -11.91437 -11.54916 -11.47988 -11.05108 -10.89813 -10.41610 -10.23095 -10.02529 -9.77276 -8.08355 -6.20604 0.90528 0.97598 1.35785 1.42667 1.44049 1.50605 2.14557 2.44302 2.66375 2.90956 3.01562 3.18802 3.21221 3.30883 3.56203 3.88462 3.95609 3.98562 4.16993 4.20042 4.27307 4.30475 4.35219 4.36938 4.46842 4.53726 4.57831 4.60882 4.68236 4.76330 4.79120 4.84991 4.91387 5.04967 5.10874 5.13215 5.17223 5.35365 5.43423 5.46497 5.62398 5.85088 5.97742 6.07096 6.13712 6.39010 6.60625 6.66821 6.88199 7.47026 8.94994 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.002866 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.842699 B = 9766.859643 C =10164.565307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 H 0.103 0.897 4 C -0.166 4.166 5 C 0.290 3.710 6 F -0.202 7.202 7 F -0.205 7.205 8 C -0.168 4.168 9 C 0.103 3.897 10 N -0.593 5.593 11 C 0.524 3.476 12 O -0.525 6.525 13 C 0.508 3.492 14 O -0.552 6.552 15 N -0.579 5.579 16 C 0.117 3.883 17 C -0.115 4.115 18 C 0.048 3.952 19 C -0.536 4.536 20 H 0.047 0.953 21 C 0.019 3.981 22 N -0.910 5.910 23 Si 0.946 3.054 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.279 1.279 27 C -0.117 4.117 28 C 0.116 3.884 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.019 0.981 41 H 0.081 0.919 42 H 0.014 0.986 43 H 0.262 0.738 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.088 0.912 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 -5.624 -18.343 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.121 0.879 4 C -0.205 4.205 5 C 0.254 3.746 6 F -0.183 7.183 7 F -0.186 7.186 8 C -0.206 4.206 9 C -0.019 4.019 10 N -0.328 5.328 11 C 0.307 3.693 12 O -0.401 6.401 13 C 0.291 3.709 14 O -0.431 6.431 15 N -0.312 5.312 16 C -0.005 4.005 17 C -0.153 4.153 18 C 0.029 3.971 19 C -0.574 4.574 20 H 0.065 0.935 21 C -0.180 4.180 22 N -0.549 5.549 23 Si 0.772 3.228 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.204 1.204 27 C -0.155 4.155 28 C -0.006 4.006 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.888 -5.947 -18.440 20.919 hybrid contribution -0.810 0.472 0.890 1.293 sum 7.078 -5.475 -17.550 19.700 Atomic orbital electron populations 1.22111 0.91890 1.03049 1.02093 1.21409 0.96491 0.96209 0.81678 0.87915 1.22968 0.91405 1.05507 1.00602 1.21108 0.92490 0.77178 0.83852 1.93012 1.87050 1.41824 1.96396 1.93014 1.90363 1.82222 1.52982 1.22901 1.05854 1.00310 0.91566 1.21953 0.78613 1.02668 0.98675 1.48293 1.07948 1.56277 1.20306 1.20200 0.86790 0.77818 0.84472 1.90888 1.15954 1.54118 1.79116 1.20496 0.78054 0.87033 0.85308 1.90743 1.52516 1.15414 1.84462 1.48353 1.64193 1.08652 1.09966 1.22021 1.01048 0.77759 0.99659 1.21870 0.95711 1.02927 0.94825 1.18602 0.95530 0.90550 0.92418 1.21518 1.27488 0.91912 1.16493 0.93468 1.25598 0.97246 0.96972 0.98181 1.69912 1.43943 1.01101 1.39957 0.85805 0.79599 0.77049 0.80335 1.19765 1.20842 1.20427 1.21893 0.97880 0.98017 0.97710 1.21835 0.98769 0.98710 0.81249 0.92490 0.90392 0.92552 0.85939 0.87798 0.85789 0.87766 0.87683 0.88767 0.89239 0.90783 0.96163 0.90051 0.96761 0.92906 0.94403 0.90822 0.89322 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 7.59 71.98 0.55 -2.26 16 2 C 0.14 2.55 3.28 44.83 0.15 2.70 16 3 H 0.10 1.62 7.92 -2.39 -0.02 1.60 16 4 C -0.17 -2.26 4.88 30.53 0.15 -2.12 16 5 C 0.29 4.33 2.10 30.62 0.06 4.39 16 6 F -0.20 -3.44 16.11 44.97 0.72 -2.72 16 7 F -0.20 -3.55 17.06 44.97 0.77 -2.78 16 8 C -0.17 -2.24 5.62 30.67 0.17 -2.07 16 9 C 0.10 1.72 6.13 86.36 0.53 2.25 16 10 N -0.59 -12.85 2.98 -797.37 -2.37 -15.23 16 11 C 0.52 15.74 5.39 87.27 0.47 16.21 16 12 O -0.52 -18.46 12.50 -3.23 -0.04 -18.50 16 13 C 0.51 16.80 5.60 87.27 0.49 17.28 16 14 O -0.55 -20.18 16.34 -3.24 -0.05 -20.23 16 15 N -0.58 -19.13 2.97 -819.63 -2.43 -21.56 16 16 C 0.12 3.96 6.39 86.51 0.55 4.52 16 17 C -0.11 -5.06 5.17 30.82 0.16 -4.90 16 18 C 0.05 2.20 2.06 -11.51 -0.02 2.17 16 19 C -0.54 -28.37 8.56 25.60 0.22 -28.15 16 20 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 21 C 0.02 1.02 5.30 84.65 0.45 1.47 16 22 N -0.91 -49.33 11.30 21.45 0.24 -49.09 16 23 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C -0.12 -4.54 5.30 30.67 0.16 -4.37 16 28 C 0.12 3.73 6.42 86.37 0.55 4.28 16 29 H 0.06 1.51 6.69 -2.38 -0.02 1.49 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.39 6.81 -2.39 -0.02 1.37 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.11 1.46 7.92 -2.39 -0.02 1.44 16 37 H 0.09 1.77 6.23 -2.39 -0.01 1.76 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.36 6.31 -2.39 -0.02 2.34 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 4.03 6.03 -2.39 -0.01 4.01 16 42 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 46 H 0.09 2.78 7.04 -2.38 -0.02 2.76 16 47 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -63.83 370.43 4.48 -59.35 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.98 Total: 14.83 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 4.64 Total: 11.40 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.56 Total: -85.87 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.09 Total: -38.74 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 1.49 Total: -5.50 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.83 4.48 -59.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329329999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.184 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds