Wall clock time and date at job start Wed Apr 1 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 O 1.42907 * 109.46807 * 239.99705 * 2 1 3 5 5 C 1.52995 * 109.46792 * 119.99992 * 2 1 3 6 6 N 1.46504 * 109.46942 * 184.53409 * 5 2 1 7 7 C 1.34770 * 120.00484 * 271.97744 * 6 5 2 8 8 O 1.21345 * 120.00659 * 175.14803 * 7 6 5 9 9 C 1.49451 * 119.99738 * 355.14124 * 7 6 5 10 10 O 1.21353 * 119.99948 * 5.22578 * 9 7 6 11 11 N 1.34775 * 120.00067 * 185.21828 * 9 7 6 12 12 C 1.47025 * 125.64812 * 359.70224 * 11 9 7 13 13 C 1.54336 * 107.26544 * 178.84597 * 12 11 9 14 14 C 1.55153 * 103.01933 * 338.13830 * 13 12 11 15 15 O 1.42907 * 111.00368 * 277.23121 * 14 13 12 16 16 C 1.50700 * 111.03540 * 153.39689 * 14 13 12 17 17 H 1.07998 * 120.00279 * 6.33312 * 16 14 13 18 18 C 1.37882 * 120.00070 * 186.32647 * 16 14 13 19 19 N 1.31522 * 119.99849 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00219 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47080 * 90.00357 * 20 18 16 22 22 H 1.48493 * 109.47492 * 210.00244 * 20 18 16 23 23 H 1.48497 * 109.47277 * 330.00380 * 20 18 16 24 24 C 1.47429 * 125.64794 * 179.97438 * 11 9 7 25 25 C 1.46508 * 119.99681 * 91.97833 * 6 5 2 26 26 H 1.09000 * 109.47198 * 1.37755 * 25 6 5 27 27 C 1.52991 * 109.47164 * 121.37706 * 25 6 5 28 28 C 1.52998 * 109.46888 * 241.37621 * 25 6 5 29 29 O 1.42905 * 109.47065 * 63.80358 * 28 25 6 30 30 H 1.08999 * 109.47195 * 300.00513 * 1 2 3 31 31 H 1.09002 * 109.46593 * 59.99975 * 1 2 3 32 32 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 33 33 H 0.96696 * 114.00139 * 309.29322 * 4 2 1 34 34 H 1.09000 * 109.47296 * 64.53767 * 5 2 1 35 35 H 1.08994 * 109.47444 * 304.53472 * 5 2 1 36 36 H 1.09002 * 109.87618 * 298.38522 * 12 11 9 37 37 H 1.08990 * 109.88412 * 59.55122 * 12 11 9 38 38 H 1.09000 * 110.84642 * 219.66964 * 13 12 11 39 39 H 1.09006 * 110.66961 * 96.52101 * 13 12 11 40 40 H 0.96701 * 113.99891 * 173.65162 * 15 14 13 41 41 H 0.96995 * 119.99628 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.37147 * 322.93720 * 24 11 9 43 43 H 1.09000 * 110.36149 * 85.15064 * 24 11 9 44 44 H 1.09005 * 109.47394 * 65.45873 * 27 25 6 45 45 H 1.08999 * 109.47362 * 185.46218 * 27 25 6 46 46 H 1.09004 * 109.47245 * 305.46260 * 27 25 6 47 47 H 1.09000 * 109.46957 * 183.79947 * 28 25 6 48 48 H 1.08996 * 109.47235 * 303.80277 * 28 25 6 49 49 H 0.96698 * 113.99769 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 7 3.5009 -0.6274 1.3051 7 6 4.2599 -1.5548 0.6885 8 8 5.4665 -1.4299 0.6595 9 6 3.6154 -2.7373 0.0405 10 8 2.4055 -2.8150 -0.0136 11 7 4.3777 -3.7172 -0.4838 12 6 5.8477 -3.7473 -0.4928 13 6 6.2747 -5.0676 -1.1684 14 6 5.0210 -5.9665 -1.0025 15 8 4.9969 -6.5787 0.2886 16 6 4.9530 -7.0062 -2.0913 17 1 5.7715 -7.1134 -2.7876 18 6 3.8456 -7.8207 -2.1986 19 7 2.8485 -7.6899 -1.3509 20 14 3.7609 -9.1089 -3.5486 21 1 4.3418 -10.3830 -3.0543 22 1 2.3441 -9.3282 -3.9355 23 1 4.5294 -8.6397 -4.7295 24 6 3.8759 -4.9339 -1.1483 25 6 4.1369 0.4747 2.0314 26 1 3.3692 1.1045 2.4808 27 6 5.0392 -0.0917 3.1294 28 6 4.9763 1.3078 1.0608 29 8 4.1211 1.9090 0.0864 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6100 -1.5444 -1.3076 34 1 1.7445 -1.7697 1.2095 35 1 1.6118 -0.2565 2.1373 36 1 6.2322 -2.8982 -1.0579 37 1 6.2253 -3.7169 0.5291 38 1 7.1329 -5.5046 -0.6581 39 1 6.4964 -4.9058 -2.2234 40 1 4.1861 -7.0715 0.4752 41 1 2.0694 -8.2627 -1.4266 42 1 2.9751 -5.2935 -0.6512 43 1 3.6739 -4.7353 -2.2008 44 1 5.8633 -0.6417 2.6749 45 1 5.4361 0.7259 3.7312 46 1 4.4610 -0.7629 3.7646 47 1 5.5028 2.0868 1.6121 48 1 5.7000 0.6639 0.5612 49 1 4.5867 2.4536 -0.5630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332371736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:27 Heat of formation + Delta-G solvation = -196.997002 kcal Electronic energy + Delta-G solvation = -33531.792261 eV Core-core repulsion = 29073.998425 eV Total energy + Delta-G solvation = -4457.793836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.77006 -38.83390 -37.68721 -37.10443 -36.59668 -35.13750 -34.15385 -32.25763 -32.12777 -30.53860 -30.21505 -27.89168 -26.42744 -26.22532 -25.57126 -23.97781 -22.52891 -21.56847 -20.74202 -19.65988 -18.63859 -17.42397 -17.28864 -17.01398 -16.38517 -16.22708 -15.79074 -15.50889 -15.32332 -15.11553 -14.86130 -14.55861 -14.37719 -13.95369 -13.81527 -13.29003 -13.09772 -13.07482 -12.86380 -12.57901 -12.46579 -12.31546 -12.19815 -12.07078 -11.93585 -11.68743 -11.64813 -11.43240 -11.35129 -11.04609 -10.82423 -10.68242 -10.56304 -10.47855 -10.40320 -10.20090 -10.05656 -9.91905 -9.36668 -8.82218 -8.67391 -8.46860 -8.40141 -7.86340 -6.30784 -4.39905 1.89656 2.64426 3.19943 3.27659 3.30341 3.65798 3.74786 4.04960 4.25173 4.61363 4.74609 4.86033 4.96838 4.97570 5.06536 5.19107 5.25422 5.30847 5.38182 5.45376 5.50349 5.54974 5.62876 5.76162 5.80488 5.82860 5.85257 5.95695 6.05501 6.07056 6.11856 6.30126 6.36292 6.52578 6.58143 6.73733 6.83842 6.89552 7.18086 7.28112 7.31986 7.55258 7.71414 7.88968 7.99296 8.06580 8.19361 8.57439 8.64478 9.27222 9.35700 10.76393 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.003493 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.014119 B = 8013.072176 C = 8915.441366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.097 3.903 3 H 0.101 0.899 4 O -0.561 6.561 5 C 0.054 3.946 6 N -0.571 5.571 7 C 0.523 3.477 8 O -0.525 6.525 9 C 0.522 3.478 10 O -0.540 6.540 11 N -0.572 5.572 12 C 0.113 3.887 13 C -0.122 4.122 14 C 0.248 3.752 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.068 0.932 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.093 3.907 25 C 0.148 3.852 26 H 0.091 0.909 27 C -0.168 4.168 28 C 0.056 3.944 29 O -0.566 6.566 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.380 0.620 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.380 0.620 41 H 0.270 0.730 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.073 0.927 49 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 16.711 6.359 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.036 3.964 3 H 0.118 0.882 4 O -0.370 6.370 5 C -0.069 4.069 6 N -0.303 5.303 7 C 0.307 3.693 8 O -0.401 6.401 9 C 0.306 3.694 10 O -0.422 6.422 11 N -0.302 5.302 12 C -0.010 4.010 13 C -0.160 4.160 14 C 0.208 3.792 15 O -0.390 6.390 16 C -0.575 4.575 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.028 4.028 25 C 0.045 3.955 26 H 0.109 0.891 27 C -0.226 4.226 28 C -0.023 4.023 29 O -0.371 6.371 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.080 0.920 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.091 0.909 49 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.117 17.193 6.720 18.460 hybrid contribution -0.725 -0.948 -0.892 1.490 sum -0.841 16.245 5.828 17.279 Atomic orbital electron populations 1.22462 0.96692 1.02785 1.02170 1.22131 0.92039 0.96843 0.85337 0.88151 1.86515 1.69850 1.36386 1.44285 1.23213 0.78645 1.06593 0.98433 1.47586 1.07139 1.24468 1.51143 1.20155 0.86655 0.83643 0.78807 1.90623 1.14125 1.77007 1.58371 1.19499 0.86532 0.83041 0.80317 1.90321 1.13725 1.78651 1.59488 1.48679 1.08282 1.20289 1.52991 1.22121 0.79285 0.98439 1.01166 1.22712 0.99479 0.93521 1.00267 1.19633 0.88148 0.88616 0.82824 1.86135 1.45314 1.71662 1.35865 1.21471 1.03978 1.17835 1.14179 0.91428 1.25072 0.94990 0.96993 0.96095 1.69709 1.07509 1.39385 1.36662 0.86397 0.77371 0.81410 0.81710 1.20399 1.21020 1.19669 1.23453 1.01274 0.81745 0.96299 1.21140 0.95836 0.87064 0.91455 0.89061 1.22137 1.01102 1.01905 0.97497 1.22674 0.93114 0.95559 0.90917 1.86457 1.37421 1.68927 1.44287 0.92101 0.91983 0.91833 0.76839 0.85159 0.91115 0.91603 0.91481 0.90630 0.90401 0.76999 0.92012 0.89113 0.91462 0.90104 0.91471 0.91770 0.93399 0.90921 0.77744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 9.45 37.16 0.35 -1.66 16 2 C 0.10 1.30 3.83 -26.73 -0.10 1.20 16 3 H 0.10 1.40 6.76 -51.93 -0.35 1.05 16 4 O -0.56 -9.36 11.59 -57.66 -0.67 -10.03 16 5 C 0.05 0.71 4.92 -4.04 -0.02 0.69 16 6 N -0.57 -8.20 2.34 -166.62 -0.39 -8.59 16 7 C 0.52 9.14 6.71 -11.59 -0.08 9.07 16 8 O -0.52 -9.44 10.41 5.50 0.06 -9.38 16 9 C 0.52 10.25 7.18 -11.59 -0.08 10.17 16 10 O -0.54 -10.60 10.29 -16.94 -0.17 -10.77 16 11 N -0.57 -11.90 3.33 -171.03 -0.57 -12.47 16 12 C 0.11 2.18 5.49 -3.06 -0.02 2.17 16 13 C -0.12 -2.48 6.13 -24.89 -0.15 -2.63 16 14 C 0.25 5.92 0.87 -89.64 -0.08 5.84 16 15 O -0.58 -14.56 13.16 -35.23 -0.46 -15.03 16 16 C -0.54 -13.72 8.27 -34.44 -0.28 -14.00 16 17 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 18 C 0.07 1.83 5.29 -17.81 -0.09 1.73 16 19 N -0.89 -23.10 10.69 55.43 0.59 -22.51 16 20 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C 0.09 2.16 5.38 -2.54 -0.01 2.14 16 25 C 0.15 1.73 2.95 -67.93 -0.20 1.53 16 26 H 0.09 0.91 7.76 -51.93 -0.40 0.51 16 27 C -0.17 -1.80 9.01 37.15 0.33 -1.46 16 28 C 0.06 0.64 6.35 37.16 0.24 0.87 16 29 O -0.57 -6.62 12.25 -35.23 -0.43 -7.05 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.38 6.45 6.59 45.56 0.30 6.75 16 34 H 0.13 2.01 4.94 -52.95 -0.26 1.75 16 35 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 36 H 0.07 1.21 7.60 -51.93 -0.39 0.81 16 37 H 0.07 1.30 7.69 -51.93 -0.40 0.90 16 38 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 40 H 0.38 9.68 7.56 45.56 0.34 10.03 16 41 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 42 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 43 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 44 H 0.08 1.04 6.40 -51.93 -0.33 0.71 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 48 H 0.07 1.00 6.01 -51.93 -0.31 0.69 16 49 H 0.38 2.99 9.12 45.56 0.42 3.40 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -28.71 381.55 -7.04 -35.75 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -5.52 Total: 23.69 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: -0.20 Total: 15.66 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.37 Total: -43.57 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -1.68 Total: -52.26 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.71 -7.04 -35.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332371736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.247 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds