Wall clock time and date at job start Wed Apr 1 2020 03:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47259 * 2 1 4 4 O 1.42907 * 109.46807 * 239.99705 * 2 1 3 5 5 C 1.52995 * 109.46792 * 119.99992 * 2 1 3 6 6 N 1.46504 * 109.46942 * 184.53409 * 5 2 1 7 7 C 1.34770 * 120.00484 * 271.97744 * 6 5 2 8 8 O 1.21345 * 120.00659 * 175.14803 * 7 6 5 9 9 C 1.49451 * 119.99738 * 355.14124 * 7 6 5 10 10 O 1.21353 * 119.99948 * 5.22578 * 9 7 6 11 11 N 1.34775 * 120.00067 * 185.21828 * 9 7 6 12 12 C 1.47025 * 125.64812 * 359.70224 * 11 9 7 13 13 C 1.54336 * 107.26544 * 178.84597 * 12 11 9 14 14 C 1.55153 * 103.01933 * 338.13830 * 13 12 11 15 15 O 1.42907 * 111.00368 * 277.23121 * 14 13 12 16 16 C 1.50700 * 111.03540 * 153.39689 * 14 13 12 17 17 H 1.07998 * 120.00279 * 6.33312 * 16 14 13 18 18 C 1.37882 * 120.00070 * 186.32647 * 16 14 13 19 19 N 1.31522 * 119.99849 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00219 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47080 * 90.00357 * 20 18 16 22 22 H 1.48493 * 109.47492 * 210.00244 * 20 18 16 23 23 H 1.48497 * 109.47277 * 330.00380 * 20 18 16 24 24 C 1.47429 * 125.64794 * 179.97438 * 11 9 7 25 25 C 1.46508 * 119.99681 * 91.97833 * 6 5 2 26 26 H 1.09000 * 109.47198 * 1.37755 * 25 6 5 27 27 C 1.52991 * 109.47164 * 121.37706 * 25 6 5 28 28 C 1.52998 * 109.46888 * 241.37621 * 25 6 5 29 29 O 1.42905 * 109.47065 * 63.80358 * 28 25 6 30 30 H 1.08999 * 109.47195 * 300.00513 * 1 2 3 31 31 H 1.09002 * 109.46593 * 59.99975 * 1 2 3 32 32 H 1.08998 * 109.47259 * 180.02562 * 1 2 3 33 33 H 0.96696 * 114.00139 * 309.29322 * 4 2 1 34 34 H 1.09000 * 109.47296 * 64.53767 * 5 2 1 35 35 H 1.08994 * 109.47444 * 304.53472 * 5 2 1 36 36 H 1.09002 * 109.87618 * 298.38522 * 12 11 9 37 37 H 1.08990 * 109.88412 * 59.55122 * 12 11 9 38 38 H 1.09000 * 110.84642 * 219.66964 * 13 12 11 39 39 H 1.09006 * 110.66961 * 96.52101 * 13 12 11 40 40 H 0.96701 * 113.99891 * 173.65162 * 15 14 13 41 41 H 0.96995 * 119.99628 * 179.97438 * 19 18 16 42 42 H 1.08996 * 110.37147 * 322.93720 * 24 11 9 43 43 H 1.09000 * 110.36149 * 85.15064 * 24 11 9 44 44 H 1.09005 * 109.47394 * 65.45873 * 27 25 6 45 45 H 1.08999 * 109.47362 * 185.46218 * 27 25 6 46 46 H 1.09004 * 109.47245 * 305.46260 * 27 25 6 47 47 H 1.09000 * 109.46957 * 183.79947 * 28 25 6 48 48 H 1.08996 * 109.47235 * 303.80277 * 28 25 6 49 49 H 0.96698 * 113.99769 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7212 1.2492 6 7 3.5009 -0.6274 1.3051 7 6 4.2599 -1.5548 0.6885 8 8 5.4665 -1.4299 0.6595 9 6 3.6154 -2.7373 0.0405 10 8 2.4055 -2.8150 -0.0136 11 7 4.3777 -3.7172 -0.4838 12 6 5.8477 -3.7473 -0.4928 13 6 6.2747 -5.0676 -1.1684 14 6 5.0210 -5.9665 -1.0025 15 8 4.9969 -6.5787 0.2886 16 6 4.9530 -7.0062 -2.0913 17 1 5.7715 -7.1134 -2.7876 18 6 3.8456 -7.8207 -2.1986 19 7 2.8485 -7.6899 -1.3509 20 14 3.7609 -9.1089 -3.5486 21 1 4.3418 -10.3830 -3.0543 22 1 2.3441 -9.3282 -3.9355 23 1 4.5294 -8.6397 -4.7295 24 6 3.8759 -4.9339 -1.1483 25 6 4.1369 0.4747 2.0314 26 1 3.3692 1.1045 2.4808 27 6 5.0392 -0.0917 3.1294 28 6 4.9763 1.3078 1.0608 29 8 4.1211 1.9090 0.0864 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6100 -1.5444 -1.3076 34 1 1.7445 -1.7697 1.2095 35 1 1.6118 -0.2565 2.1373 36 1 6.2322 -2.8982 -1.0579 37 1 6.2253 -3.7169 0.5291 38 1 7.1329 -5.5046 -0.6581 39 1 6.4964 -4.9058 -2.2234 40 1 4.1861 -7.0715 0.4752 41 1 2.0694 -8.2627 -1.4266 42 1 2.9751 -5.2935 -0.6512 43 1 3.6739 -4.7353 -2.2008 44 1 5.8633 -0.6417 2.6749 45 1 5.4361 0.7259 3.7312 46 1 4.4610 -0.7629 3.7646 47 1 5.5028 2.0868 1.6121 48 1 5.7000 0.6639 0.5612 49 1 4.5867 2.4536 -0.5630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332371736.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:26 Heat of formation + Delta-G solvation = -220.713989 kcal Electronic energy + Delta-G solvation = -33532.820707 eV Core-core repulsion = 29073.998425 eV Total energy + Delta-G solvation = -4458.822282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.11138 -40.33112 -39.09808 -38.45747 -37.68904 -36.37535 -35.79874 -34.23065 -33.15089 -31.91600 -31.59479 -29.67147 -27.83959 -27.14544 -26.96983 -25.43284 -23.97506 -22.65848 -22.04913 -21.46413 -20.00469 -19.12902 -18.50588 -18.23916 -17.73257 -17.55579 -17.10210 -17.07408 -16.64071 -16.54042 -16.18431 -16.05267 -15.91577 -15.06294 -14.93762 -14.79293 -14.65786 -14.56656 -14.35043 -13.92740 -13.60253 -13.52643 -13.42788 -13.29086 -13.15402 -13.04314 -12.85261 -12.82590 -12.70269 -12.61706 -12.36799 -12.33267 -12.22802 -12.10511 -11.71859 -11.57412 -11.21906 -11.12992 -10.90455 -10.66779 -10.36297 -10.06478 -9.72860 -9.46624 -8.24402 -6.40762 0.46083 1.32847 1.44515 1.46652 1.55567 2.20879 2.35423 2.43502 3.01687 3.14512 3.31053 3.63747 3.78710 3.88907 4.05624 4.06355 4.10974 4.17310 4.27619 4.30219 4.33380 4.40459 4.51042 4.58521 4.66865 4.72366 4.73062 4.74912 4.80992 4.90211 4.93106 5.00596 5.07193 5.15287 5.18594 5.26387 5.34324 5.35502 5.44170 5.57094 5.75370 6.04995 6.08660 6.38104 6.63701 6.70315 6.84396 6.86878 7.11060 7.28115 7.36012 8.81206 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016200 B = 0.003493 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.014119 B = 8013.072176 C = 8915.441366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 H 0.101 0.899 4 O -0.581 6.581 5 C 0.052 3.948 6 N -0.561 5.561 7 C 0.520 3.480 8 O -0.534 6.534 9 C 0.512 3.488 10 O -0.544 6.544 11 N -0.583 5.583 12 C 0.123 3.877 13 C -0.116 4.116 14 C 0.234 3.766 15 O -0.587 6.587 16 C -0.557 4.557 17 H 0.067 0.933 18 C 0.032 3.968 19 N -0.912 5.912 20 Si 0.963 3.037 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.111 3.889 25 C 0.140 3.860 26 H 0.118 0.882 27 C -0.162 4.162 28 C 0.059 3.941 29 O -0.581 6.581 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.374 0.626 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.374 0.626 41 H 0.270 0.730 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 18.594 7.091 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.036 3.964 3 H 0.119 0.881 4 O -0.391 6.391 5 C -0.070 4.070 6 N -0.293 5.293 7 C 0.303 3.697 8 O -0.412 6.412 9 C 0.297 3.703 10 O -0.425 6.425 11 N -0.315 5.315 12 C 0.001 3.999 13 C -0.154 4.154 14 C 0.194 3.806 15 O -0.395 6.395 16 C -0.595 4.595 17 H 0.085 0.915 18 C -0.170 4.170 19 N -0.551 5.551 20 Si 0.788 3.212 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.011 4.011 25 C 0.038 3.962 26 H 0.136 0.864 27 C -0.220 4.220 28 C -0.019 4.019 29 O -0.389 6.389 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.225 0.775 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.223 0.777 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.107 19.130 7.468 20.537 hybrid contribution -0.787 -1.438 -1.070 1.958 sum -0.894 17.692 6.398 18.835 Atomic orbital electron populations 1.22383 0.94688 1.02698 1.03553 1.22271 0.93655 0.96271 0.84232 0.88088 1.86494 1.70473 1.36137 1.45964 1.23237 0.78187 1.05601 1.00024 1.47703 1.07490 1.24133 1.49950 1.19754 0.86679 0.83684 0.79561 1.90621 1.14275 1.77204 1.59116 1.20162 0.86660 0.83509 0.79979 1.90339 1.14045 1.78923 1.59224 1.48696 1.08860 1.20131 1.53792 1.22061 0.78489 0.98227 1.01147 1.22710 0.98251 0.93157 1.01252 1.19829 0.90032 0.88824 0.81934 1.86127 1.44956 1.71731 1.36681 1.21749 1.04227 1.18752 1.14812 0.91486 1.25754 0.94670 0.98626 0.97923 1.69810 1.07743 1.39866 1.37681 0.85480 0.77232 0.79070 0.79403 1.20196 1.20910 1.19180 1.22963 1.00012 0.82912 0.95179 1.21511 0.96792 0.86354 0.91570 0.86384 1.22091 1.00003 1.02686 0.97249 1.22617 0.92510 0.95925 0.90850 1.86409 1.38208 1.69292 1.44963 0.89465 0.91856 0.92630 0.77485 0.87425 0.87498 0.90428 0.91577 0.89810 0.89309 0.77709 0.92028 0.91959 0.92960 0.92648 0.88339 0.91954 0.90258 0.93725 0.76030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 9.45 71.98 0.68 -2.84 16 2 C 0.10 2.42 3.83 30.59 0.12 2.54 16 3 H 0.10 2.59 6.76 -2.39 -0.02 2.58 16 4 O -0.58 -19.42 11.59 -127.53 -1.48 -20.89 16 5 C 0.05 1.29 4.92 86.38 0.43 1.71 16 6 N -0.56 -15.31 2.34 -799.42 -1.87 -17.18 16 7 C 0.52 18.04 6.71 87.27 0.59 18.62 16 8 O -0.53 -19.09 10.41 -3.23 -0.03 -19.12 16 9 C 0.51 20.47 7.18 87.27 0.63 21.10 16 10 O -0.54 -21.93 10.29 18.19 0.19 -21.74 16 11 N -0.58 -24.82 3.33 -813.38 -2.71 -27.52 16 12 C 0.12 4.77 5.49 86.73 0.48 5.25 16 13 C -0.12 -4.71 6.13 31.79 0.19 -4.52 16 14 C 0.23 11.37 0.87 -10.16 -0.01 11.36 16 15 O -0.59 -30.11 13.16 -148.98 -1.96 -32.07 16 16 C -0.56 -28.84 8.27 25.60 0.21 -28.62 16 17 H 0.07 3.39 7.79 -2.91 -0.02 3.37 16 18 C 0.03 1.62 5.29 84.65 0.45 2.07 16 19 N -0.91 -48.15 10.69 21.45 0.23 -47.92 16 20 Si 0.96 41.17 29.54 68.60 2.03 43.20 16 21 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 C 0.11 5.35 5.38 86.85 0.47 5.81 16 25 C 0.14 2.87 2.95 44.99 0.13 3.00 16 26 H 0.12 1.85 7.76 -2.39 -0.02 1.83 16 27 C -0.16 -3.07 9.01 71.98 0.65 -2.42 16 28 C 0.06 1.21 6.35 71.98 0.46 1.66 16 29 O -0.58 -12.29 12.25 -148.98 -1.83 -14.12 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.37 13.08 6.59 -74.06 -0.49 12.59 16 34 H 0.11 3.27 4.94 -18.52 -0.09 3.18 16 35 H 0.11 1.90 7.87 -2.39 -0.02 1.88 16 36 H 0.08 2.82 7.60 -2.39 -0.02 2.80 16 37 H 0.07 2.57 7.69 -2.39 -0.02 2.55 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.38 8.03 -2.38 -0.02 3.36 16 40 H 0.37 19.75 7.56 -74.06 -0.56 19.19 16 41 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 42 H 0.06 3.31 7.33 -2.39 -0.02 3.29 16 43 H 0.05 2.60 8.03 -2.39 -0.02 2.59 16 44 H 0.05 1.36 6.40 -2.38 -0.02 1.34 16 45 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.04 1.18 6.01 -2.39 -0.01 1.16 16 49 H 0.39 5.46 9.12 -74.06 -0.68 4.78 16 Total: -1.00 -62.77 381.55 -2.77 -65.54 By element: Atomic # 1 Polarization: 57.91 SS G_CDS: -0.80 Total: 57.11 kcal Atomic # 6 Polarization: 29.27 SS G_CDS: 5.46 Total: 34.73 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -4.35 Total: -92.63 kcal Atomic # 8 Polarization: -102.84 SS G_CDS: -5.11 Total: -107.95 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -62.77 -2.77 -65.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332371736.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.172 kcal (2) G-P(sol) polarization free energy of solvation -62.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds