Wall clock time and date at job start Wed Apr 1 2020 04:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00109 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00231 * 3 2 1 6 6 H 1.48493 * 109.47121 * 149.99652 * 3 2 1 7 7 C 1.37875 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08997 * 109.47395 * 305.00575 * 12 11 10 14 14 N 1.46907 * 109.47034 * 65.00090 * 12 11 10 15 15 C 1.50702 * 109.47417 * 184.99962 * 12 11 10 16 16 O 1.21276 * 119.99842 * 260.00556 * 15 12 11 17 17 N 1.34774 * 119.99654 * 79.99812 * 15 12 11 18 18 C 1.46502 * 120.00078 * 179.97438 * 17 15 12 19 19 C 1.50697 * 109.47244 * 180.02562 * 18 17 15 20 20 C 1.38788 * 120.35574 * 269.72391 * 19 18 17 21 21 C 1.38421 * 118.48386 * 179.80181 * 20 19 18 22 22 C 1.38939 * 119.10356 * 0.47933 * 21 20 19 23 23 N 1.39853 * 119.68425 * 179.74505 * 22 21 20 24 24 C 1.34810 * 126.84253 * 179.72903 * 23 22 21 25 25 N 1.30818 * 108.01690 * 179.89531 * 24 23 22 26 26 C 1.33291 * 109.84681 * 0.37671 * 25 24 23 27 27 N 1.30716 * 109.01430 * 359.76834 * 26 25 24 28 28 N 1.32298 * 120.62439 * 359.75941 * 22 21 20 29 29 C 1.31889 * 121.65422 * 359.97438 * 28 22 21 30 30 H 0.97004 * 119.99097 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 32 32 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 33 33 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 34 34 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 35 35 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 37 37 H 1.00898 * 110.99789 * 59.99986 * 14 12 11 38 38 H 1.00899 * 111.00310 * 183.94943 * 14 12 11 39 39 H 0.97003 * 120.00109 * 0.02562 * 17 15 12 40 40 H 1.08998 * 109.47182 * 300.01147 * 18 17 15 41 41 H 1.09007 * 109.46701 * 60.00300 * 18 17 15 42 42 H 1.08008 * 120.76197 * 0.02612 * 20 19 18 43 43 H 1.08004 * 120.45275 * 180.19692 * 21 20 19 44 44 H 1.08005 * 125.99091 * 359.97438 * 24 23 22 45 45 H 1.07996 * 125.49020 * 179.80181 * 26 25 24 46 46 H 1.08006 * 119.58165 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6367 0.0001 11 6 5.5515 -2.6367 0.0001 12 6 6.0614 -4.0792 0.0009 13 1 5.6267 -4.6179 0.8429 14 7 5.6728 -4.7366 -1.2541 15 6 7.5633 -4.0811 0.1248 16 8 8.2529 -4.2345 -0.8610 17 7 8.1401 -3.9121 1.3311 18 6 9.6002 -3.9144 1.4517 19 6 9.9854 -3.7088 2.8940 20 6 10.1865 -2.4285 3.3906 21 6 10.5353 -2.2842 4.7223 22 6 10.6813 -3.4197 5.5095 23 7 11.0386 -3.2883 6.8552 24 6 11.2135 -4.2848 7.7462 25 7 11.5444 -3.7489 8.8928 26 6 11.5830 -2.4216 8.7776 27 7 11.2808 -2.0917 7.5494 28 7 10.4857 -4.6241 4.9980 29 6 10.1476 -4.7928 3.7345 30 1 -0.4849 0.8402 0.0004 31 1 3.8751 -0.6798 0.8895 32 1 3.8745 -0.6809 -0.8904 33 1 3.6584 -3.1503 0.8903 34 1 3.6578 -3.1507 -0.8897 35 1 5.9148 -2.1229 -0.8898 36 1 5.9147 -2.1229 0.8901 37 1 6.0637 -4.2557 -2.0503 38 1 5.9418 -5.7091 -1.2513 39 1 7.5886 -3.7896 2.1196 40 1 9.9919 -4.8703 1.1039 41 1 10.0161 -3.1093 0.8458 42 1 10.0700 -1.5642 2.7534 43 1 10.6964 -1.3025 5.1428 44 1 11.1015 -5.3405 7.5478 45 1 11.8255 -1.7302 9.5710 46 1 9.9967 -5.7915 3.3517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332929342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:56 Heat of formation + Delta-G solvation = 88.169691 kcal Electronic energy + Delta-G solvation = -27986.685389 eV Core-core repulsion = 23913.151731 eV Total energy + Delta-G solvation = -4073.533658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.90105 -41.05408 -40.03535 -36.35917 -35.72518 -34.35982 -33.38895 -33.28381 -31.83709 -31.57456 -31.15792 -28.49805 -27.19180 -25.17358 -24.84679 -23.74667 -22.29858 -22.14848 -21.85901 -20.37561 -20.06697 -19.27666 -17.60636 -17.35893 -16.85073 -16.68895 -16.55353 -16.06128 -15.90138 -15.49751 -15.10894 -15.02330 -14.65834 -14.61509 -14.38624 -14.14575 -13.97613 -13.84419 -13.29270 -13.12635 -12.76455 -12.63421 -12.50406 -11.97784 -11.82534 -11.57773 -11.40495 -10.88900 -10.76265 -10.74832 -10.67262 -10.47077 -10.46022 -10.38968 -9.91262 -9.68472 -9.53906 -9.45816 -9.29264 -9.15657 -8.67293 -8.51153 -6.01672 -3.98918 -0.16590 0.46728 1.24226 1.33817 2.33252 2.38085 2.80034 3.21100 3.31263 3.38425 3.41248 3.50759 3.75129 3.84424 3.92763 4.17831 4.20037 4.44650 4.46767 4.50044 4.57498 4.69922 4.94865 5.01537 5.06516 5.16404 5.20419 5.24783 5.32424 5.43808 5.58878 5.68915 5.75396 5.78944 5.91762 6.00532 6.24087 6.26754 6.61099 6.73548 6.90520 6.95612 6.97764 7.19374 7.37086 7.41753 7.44512 7.50603 7.83168 7.91638 8.58191 9.04759 9.61254 11.11954 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009670 B = 0.002052 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2894.798938 B =13639.445002 C =15716.651206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.517 4.517 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.093 4.093 11 C -0.107 4.107 12 C 0.079 3.921 13 H 0.102 0.898 14 N -0.811 5.811 15 C 0.484 3.516 16 O -0.547 6.547 17 N -0.729 5.729 18 C 0.165 3.835 19 C -0.165 4.165 20 C -0.031 4.031 21 C -0.155 4.155 22 C 0.366 3.634 23 N -0.335 5.335 24 C 0.293 3.707 25 N -0.540 5.540 26 C 0.216 3.784 27 N -0.309 5.309 28 N -0.501 5.501 29 C 0.154 3.846 30 H 0.262 0.738 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.350 0.650 38 H 0.340 0.660 39 H 0.404 0.596 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.229 0.771 45 H 0.228 0.772 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.310 -9.885 11.984 31.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.053 4.053 10 C -0.130 4.130 11 C -0.145 4.145 12 C -0.037 4.037 13 H 0.120 0.880 14 N -0.339 5.339 15 C 0.269 3.731 16 O -0.423 6.423 17 N -0.382 5.382 18 C 0.041 3.959 19 C -0.168 4.168 20 C -0.058 4.058 21 C -0.177 4.177 22 C 0.138 3.862 23 N -0.121 5.121 24 C -0.003 4.003 25 N -0.265 5.265 26 C -0.087 4.087 27 N -0.134 5.134 28 N -0.213 5.213 29 C -0.004 4.004 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.239 0.761 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.245 0.755 45 H 0.244 0.756 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 27.046 -9.858 12.049 31.206 hybrid contribution 1.104 1.401 -0.217 1.797 sum 28.150 -8.457 11.832 31.685 Atomic orbital electron populations 1.69927 1.06274 1.26751 1.51468 1.25058 0.94736 0.99150 0.94766 0.86773 0.80258 0.83730 0.78442 1.20360 1.21504 1.19165 1.21170 0.89613 0.94407 1.50280 0.90987 1.19603 0.97132 0.92700 0.95887 1.21373 0.90249 0.99359 1.02062 1.21688 0.99660 0.91260 1.01893 1.21758 0.86983 0.99382 0.95590 0.87967 1.59028 1.65129 1.06561 1.03195 1.22632 0.93183 0.74779 0.82473 1.90688 1.65327 1.49352 1.36983 1.46250 1.06547 1.74815 1.10583 1.20062 0.81781 1.03561 0.90514 1.20968 1.03878 0.94297 0.97638 1.21589 0.92254 0.97691 0.94227 1.21715 1.02420 0.99504 0.94049 1.17737 0.96163 0.90596 0.81692 1.47554 1.50978 1.05945 1.07608 1.26471 0.92563 0.97601 0.83669 1.70750 1.23816 1.08174 1.23772 1.26331 0.96097 0.92201 0.94023 1.78202 1.24918 1.02943 1.07371 1.66882 1.15565 1.23229 1.15663 1.22511 0.92210 0.99577 0.86135 0.92836 0.97054 0.97261 0.93022 0.91187 0.91863 0.91952 0.83526 0.84818 0.76094 0.90035 0.90096 0.83134 0.82964 0.75532 0.75610 0.81039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 2 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 10 C -0.09 -1.74 5.04 -26.73 -0.13 -1.87 16 11 C -0.11 -1.53 4.84 -26.73 -0.13 -1.66 16 12 C 0.08 0.91 3.15 -68.86 -0.22 0.70 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 14 N -0.81 -9.84 8.44 -5.65 -0.05 -9.89 16 15 C 0.48 5.32 7.07 -10.99 -0.08 5.25 16 16 O -0.55 -7.70 16.25 5.56 0.09 -7.61 16 17 N -0.73 -5.68 5.55 -61.47 -0.34 -6.03 16 18 C 0.17 1.06 5.82 -5.19 -0.03 1.03 16 19 C -0.16 -0.92 5.27 -104.46 -0.55 -1.47 16 20 C -0.03 -0.18 9.85 -39.31 -0.39 -0.57 16 21 C -0.15 -1.12 9.72 -39.25 -0.38 -1.50 16 22 C 0.37 3.05 7.56 -154.34 -1.17 1.88 16 23 N -0.34 -3.00 3.81 -13.33 -0.05 -3.05 16 24 C 0.29 2.30 12.26 -90.32 -1.11 1.19 16 25 N -0.54 -4.75 11.19 -15.73 -0.18 -4.93 16 26 C 0.22 1.65 13.03 -91.77 -1.20 0.46 16 27 N -0.31 -2.86 12.02 29.30 0.35 -2.51 16 28 N -0.50 -3.74 9.90 -12.28 -0.12 -3.86 16 29 C 0.15 0.87 10.85 -17.57 -0.19 0.68 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.35 4.42 8.58 -39.29 -0.34 4.09 16 38 H 0.34 3.52 9.06 -39.29 -0.36 3.17 16 39 H 0.40 2.61 8.46 -40.82 -0.35 2.27 16 40 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 42 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.15 1.07 7.73 -52.48 -0.41 0.67 16 44 H 0.23 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.23 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -36.25 396.61 -10.75 -47.00 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.42 Total: 4.74 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -6.11 Total: -9.66 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.39 Total: -57.56 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.25 -10.75 -47.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332929342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.172 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds