Wall clock time and date at job start Wed Apr 1 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.46906 * 55.00224 * 12 11 10 14 14 N 1.46898 * 109.47092 * 295.00148 * 12 11 10 15 15 C 1.50699 * 109.47482 * 174.99860 * 12 11 10 16 16 O 1.21286 * 119.99857 * 100.00182 * 15 12 11 17 17 N 1.34781 * 120.00160 * 279.99980 * 15 12 11 18 18 C 1.46497 * 119.99716 * 179.97438 * 17 15 12 19 19 C 1.50705 * 109.46880 * 180.02562 * 18 17 15 20 20 C 1.38798 * 120.35074 * 269.72219 * 19 18 17 21 21 C 1.38420 * 118.48105 * 179.79902 * 20 19 18 22 22 C 1.38935 * 119.10611 * 0.47945 * 21 20 19 23 23 N 1.39853 * 119.68735 * 179.74408 * 22 21 20 24 24 C 1.34812 * 126.84597 * 179.72439 * 23 22 21 25 25 N 1.30812 * 108.01345 * 179.89180 * 24 23 22 26 26 C 1.33285 * 109.85355 * 0.38852 * 25 24 23 27 27 N 1.30721 * 109.01438 * 359.75542 * 26 25 24 28 28 N 1.32305 * 120.62635 * 359.75764 * 22 21 20 29 29 C 1.31890 * 121.65107 * 359.97438 * 28 22 21 30 30 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 32 32 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 33 33 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 34 34 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 1.00899 * 111.00057 * 299.99390 * 14 12 11 38 38 H 1.00898 * 110.99947 * 63.95776 * 14 12 11 39 39 H 0.96994 * 119.99782 * 0.02562 * 17 15 12 40 40 H 1.08998 * 109.47674 * 300.00172 * 18 17 15 41 41 H 1.08999 * 109.47358 * 60.00538 * 18 17 15 42 42 H 1.08005 * 120.75842 * 0.02562 * 20 19 18 43 43 H 1.08002 * 120.44481 * 180.19611 * 21 20 19 44 44 H 1.07999 * 125.99071 * 0.02562 * 24 23 22 45 45 H 1.07997 * 125.49919 * 179.80001 * 26 25 24 46 46 H 1.07999 * 119.57744 * 179.97438 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0009 12 6 6.0614 -4.0791 -0.0015 13 1 5.6269 -4.6178 -0.8435 14 7 5.6728 -4.7363 1.2535 15 6 7.5633 -4.0809 -0.1253 16 8 8.2529 -4.2343 0.8606 17 7 8.1403 -3.9121 -1.3316 18 6 9.6004 -3.9133 -1.4517 19 6 9.9858 -3.7069 -2.8940 20 6 10.1555 -4.7962 -3.7373 21 6 10.5056 -4.5618 -5.0559 22 6 10.6841 -3.2526 -5.4853 23 7 11.0431 -3.0022 -6.8135 24 6 11.2472 -1.7971 -7.3824 25 7 11.5687 -1.9905 -8.6355 26 6 11.5723 -3.2957 -8.9057 27 7 11.2568 -3.9557 -7.8223 28 7 10.5178 -2.2406 -4.6495 29 6 10.1793 -2.4321 -3.3893 30 1 -0.4850 0.8401 0.0004 31 1 3.8751 -0.6805 0.8889 32 1 3.8745 -0.6801 -0.8910 33 1 3.6584 -3.1503 0.8892 34 1 3.6578 -3.1506 -0.8908 35 1 5.9148 -2.1229 -0.8909 36 1 5.9148 -2.1228 0.8890 37 1 6.0636 -4.2554 2.0497 38 1 4.6690 -4.8055 1.3296 39 1 7.5888 -3.7891 -2.1200 40 1 10.0155 -3.1077 -0.8462 41 1 9.9928 -4.8687 -1.1036 42 1 10.0140 -5.8034 -3.3740 43 1 10.6427 -5.3859 -5.7404 44 1 11.1625 -0.8400 -6.8892 45 1 11.7998 -3.7370 -9.8647 46 1 10.0529 -1.5815 -2.7360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332929343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:00 Heat of formation + Delta-G solvation = 64.901025 kcal Electronic energy + Delta-G solvation = -28003.863963 eV Core-core repulsion = 23929.321300 eV Total energy + Delta-G solvation = -4074.542663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.45652 -41.56180 -40.76192 -37.52846 -36.62835 -35.20328 -34.94596 -33.78569 -33.23977 -32.40434 -31.72559 -29.73933 -28.10495 -26.42353 -25.37449 -24.51599 -23.59363 -22.71077 -22.43988 -21.80899 -21.20107 -19.79324 -18.88870 -18.56373 -17.83641 -17.43389 -17.13943 -16.56126 -16.43351 -16.36347 -16.09443 -15.91890 -15.63615 -15.39766 -15.13638 -15.11219 -14.88170 -14.74476 -14.33182 -14.24888 -14.07817 -13.68590 -13.56545 -13.33700 -12.99622 -12.96982 -12.65804 -12.31999 -12.10816 -11.80261 -11.70363 -11.44169 -11.34775 -11.33089 -11.14558 -11.06352 -10.88838 -10.77201 -10.76439 -10.12113 -9.77488 -9.60794 -8.29562 -6.33417 -0.67465 0.03466 0.70612 0.82302 1.34937 1.37340 1.48502 1.62832 1.77465 2.13293 2.35368 2.65289 3.04662 3.06119 3.27153 3.39878 3.45995 3.68987 3.74729 3.77080 3.82839 4.02192 4.03798 4.10204 4.12540 4.39599 4.49503 4.53202 4.62478 4.71712 4.75457 4.76256 4.94265 4.98442 5.08389 5.11111 5.12809 5.21891 5.31894 5.38554 5.52767 5.60411 5.67508 5.74309 6.09388 6.28407 6.43102 6.50362 6.53130 6.75651 6.89631 7.23655 7.31510 8.87042 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009498 B = 0.002079 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2947.283134 B =13464.721639 C =15628.301882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.000 4.000 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.531 4.531 8 H 0.033 0.967 9 C -0.013 4.013 10 C -0.094 4.094 11 C -0.137 4.137 12 C 0.081 3.919 13 H 0.118 0.882 14 N -0.836 5.836 15 C 0.528 3.472 16 O -0.568 6.568 17 N -0.717 5.717 18 C 0.171 3.829 19 C -0.155 4.155 20 C -0.023 4.023 21 C -0.162 4.162 22 C 0.345 3.655 23 N -0.344 5.344 24 C 0.289 3.711 25 N -0.562 5.562 26 C 0.215 3.785 27 N -0.333 5.333 28 N -0.513 5.513 29 C 0.154 3.846 30 H 0.265 0.735 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.346 0.654 38 H 0.355 0.645 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.172 0.828 43 H 0.152 0.848 44 H 0.247 0.753 45 H 0.260 0.740 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.790 -8.898 -12.437 31.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.052 0.948 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.177 4.177 12 C -0.034 4.034 13 H 0.136 0.864 14 N -0.368 5.368 15 C 0.314 3.686 16 O -0.446 6.446 17 N -0.370 5.370 18 C 0.048 3.952 19 C -0.158 4.158 20 C -0.049 4.049 21 C -0.184 4.184 22 C 0.119 3.881 23 N -0.129 5.129 24 C -0.006 4.006 25 N -0.288 5.288 26 C -0.087 4.087 27 N -0.159 5.159 28 N -0.226 5.226 29 C -0.005 4.005 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.170 0.830 39 H 0.249 0.751 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.190 0.810 43 H 0.170 0.830 44 H 0.263 0.737 45 H 0.275 0.725 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 28.711 -9.244 -12.532 32.662 hybrid contribution -1.246 1.158 0.219 1.716 sum 27.465 -8.085 -12.313 31.165 Atomic orbital electron populations 1.70075 1.08322 1.28070 1.52818 1.26061 0.95623 1.03633 0.94335 0.85651 0.79448 0.78301 0.79180 1.19073 1.21337 1.17037 1.21550 0.92369 0.93008 1.50008 0.94845 1.19540 0.93629 0.95513 0.96369 1.21331 0.93557 0.97050 1.01267 1.22267 0.96068 0.96092 1.03230 1.21406 0.91116 0.94671 0.96245 0.86438 1.58689 1.17107 1.57500 1.03479 1.20665 0.90408 0.74660 0.82829 1.90673 1.65495 1.50021 1.38373 1.45946 1.07453 1.73996 1.09591 1.20064 0.80309 1.03980 0.90880 1.20850 1.03689 0.94382 0.96873 1.21790 0.91193 1.01084 0.90832 1.21774 1.02861 0.95688 0.98072 1.18008 0.97068 0.91159 0.81914 1.47663 1.51171 1.06346 1.07723 1.26915 0.91674 0.92918 0.89095 1.70768 1.24952 1.18807 1.14280 1.27026 0.94838 0.87588 0.99221 1.78130 1.26361 1.14223 0.97172 1.66919 1.16361 1.34109 1.05213 1.22905 0.91132 0.97594 0.88862 0.92614 0.96743 0.96187 0.93018 0.92282 0.89984 0.92330 0.84013 0.82978 0.75084 0.89731 0.89759 0.81021 0.82991 0.73686 0.72471 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 2 C 0.00 0.00 5.47 84.66 0.46 0.46 16 3 Si 0.95 43.34 27.47 68.60 1.88 45.23 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 6 H -0.25 -10.39 6.54 99.48 0.65 -9.74 16 7 C -0.53 -29.64 9.66 25.60 0.25 -29.39 16 8 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.09 -3.13 4.92 30.59 0.15 -2.98 16 11 C -0.14 -3.38 4.84 30.59 0.15 -3.23 16 12 C 0.08 1.73 3.21 44.17 0.14 1.87 16 13 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 14 N -0.84 -19.82 8.94 -171.81 -1.54 -21.36 16 15 C 0.53 11.23 7.08 87.66 0.62 11.85 16 16 O -0.57 -16.31 16.25 -3.05 -0.05 -16.36 16 17 N -0.72 -9.68 5.55 -466.78 -2.59 -12.27 16 18 C 0.17 1.84 5.82 85.63 0.50 2.34 16 19 C -0.15 -1.39 5.27 -19.76 -0.10 -1.49 16 20 C -0.02 -0.19 9.85 22.45 0.22 0.03 16 21 C -0.16 -2.02 9.72 22.48 0.22 -1.80 16 22 C 0.35 5.52 7.56 132.75 1.00 6.52 16 23 N -0.34 -6.07 3.81 -196.10 -0.75 -6.82 16 24 C 0.29 4.63 12.26 180.25 2.21 6.84 16 25 N -0.56 -9.86 11.19 -203.70 -2.28 -12.14 16 26 C 0.22 3.12 13.03 180.75 2.35 5.48 16 27 N -0.33 -5.91 12.02 -61.22 -0.74 -6.65 16 28 N -0.51 -7.51 9.90 -192.78 -1.91 -9.42 16 29 C 0.15 1.62 10.85 84.66 0.92 2.53 16 30 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 32 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 33 H 0.05 1.73 6.87 -2.39 -0.02 1.72 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.35 8.64 8.58 -89.69 -0.77 7.87 16 38 H 0.35 8.13 7.55 -89.70 -0.68 7.45 16 39 H 0.41 4.13 8.46 -92.71 -0.78 3.34 16 40 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 43 H 0.15 1.83 7.73 -2.91 -0.02 1.81 16 44 H 0.25 2.54 8.06 -2.91 -0.02 2.52 16 45 H 0.26 1.42 8.06 -2.91 -0.02 1.40 16 46 H 0.19 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -78.04 394.65 0.31 -77.73 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -1.25 Total: 22.29 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 9.21 Total: -1.42 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -9.50 Total: -127.46 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.05 Total: -16.36 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.23 kcal Total: -78.04 0.31 -77.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332929343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.634 kcal (2) G-P(sol) polarization free energy of solvation -78.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds