Wall clock time and date at job start Wed Apr 1 2020 03:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.47133 * 2 1 4 4 O 1.42102 * 108.58180 * 65.51106 * 3 2 1 5 5 O 1.42103 * 108.57662 * 294.48993 * 3 2 1 6 6 C 1.81397 * 101.91968 * 180.02562 * 3 2 1 7 7 C 1.53004 * 109.47001 * 180.02562 * 6 3 2 8 8 N 1.46896 * 109.47206 * 179.97438 * 7 6 3 9 9 C 1.46905 * 111.00279 * 66.04296 * 8 7 6 10 10 C 1.38589 * 111.00031 * 189.99752 * 8 7 6 11 11 N 1.31214 * 126.47321 * 0.02562 * 10 8 7 12 12 N 1.28527 * 109.85861 * 179.74117 * 11 10 8 13 13 C 1.30288 * 110.05517 * 359.97438 * 12 11 10 14 14 C 1.50706 * 126.34930 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.46861 * 89.97908 * 14 13 12 16 16 C 1.52999 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47513 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99752 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00324 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00175 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47389 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47261 * 119.99884 * 21 19 17 24 24 H 1.48503 * 109.47302 * 239.99571 * 21 19 17 25 25 N 1.36451 * 126.47197 * 179.71560 * 10 8 7 26 26 C 1.46506 * 127.13577 * 0.23829 * 25 10 8 27 27 H 1.09004 * 109.47353 * 299.99816 * 1 2 3 28 28 H 1.08997 * 109.47284 * 60.00153 * 1 2 3 29 29 H 1.09000 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46982 * 239.99649 * 2 1 3 31 31 H 1.09004 * 109.46641 * 119.99883 * 2 1 3 32 32 H 1.08992 * 109.47473 * 59.99941 * 6 3 2 33 33 H 1.09004 * 109.47117 * 299.99044 * 6 3 2 34 34 H 1.08999 * 109.47362 * 59.99279 * 7 6 3 35 35 H 1.09008 * 109.47006 * 299.99571 * 7 6 3 36 36 H 1.08991 * 109.47322 * 183.95666 * 9 8 7 37 37 H 1.08997 * 109.46717 * 303.95743 * 9 8 7 38 38 H 1.09004 * 109.47145 * 63.95312 * 9 8 7 39 39 H 1.08998 * 109.47064 * 209.98253 * 14 13 12 40 40 H 1.09000 * 109.46741 * 329.97784 * 14 13 12 41 41 H 1.08998 * 109.47563 * 300.00039 * 15 14 13 42 42 H 1.09000 * 109.47543 * 60.00368 * 15 14 13 43 43 H 1.09002 * 109.47151 * 300.00238 * 16 15 14 44 44 H 1.09003 * 109.47404 * 59.99613 * 16 15 14 45 45 H 0.97000 * 119.99560 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.47504 * 90.03124 * 26 25 10 47 47 H 1.09004 * 109.46582 * 210.02524 * 26 25 10 48 48 H 1.08998 * 109.47068 * 330.02132 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4718 -0.0008 7 6 4.6280 2.8348 -0.0002 8 7 6.0843 2.6418 -0.0003 9 6 6.5331 2.0211 -1.2538 10 6 6.7440 3.8397 0.2248 11 7 6.1877 5.0123 0.4178 12 7 7.0970 5.9022 0.6002 13 6 8.2775 5.3546 0.5354 14 6 9.5994 6.0600 0.6969 15 6 10.0074 6.0472 2.1714 16 6 11.3492 6.7639 2.3355 17 6 11.7515 6.7508 3.7878 18 1 11.1137 6.2788 4.5205 19 6 12.9332 7.3421 4.1812 20 7 13.7096 7.9172 3.2889 21 14 13.4315 7.3265 5.9814 22 1 12.3938 6.6216 6.7761 23 1 14.7306 6.6225 6.1293 24 1 13.5665 8.7224 6.4698 25 7 8.0946 4.0213 0.2935 26 6 9.1334 2.9995 0.1408 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2252 0.9149 -0.8909 33 1 4.2259 0.9147 0.8891 34 1 4.3356 3.3915 0.8901 35 1 4.3351 3.3925 -0.8899 36 1 7.6039 1.8254 -1.1993 37 1 5.9995 1.0829 -1.4060 38 1 6.3287 2.6945 -2.0862 39 1 10.3587 5.5486 0.1053 40 1 9.5054 7.0906 0.3548 41 1 9.2481 6.5585 2.7630 42 1 10.1014 5.0165 2.5135 43 1 12.1088 6.2529 1.7438 44 1 11.2549 7.7945 1.9935 45 1 14.5412 8.3329 3.5657 46 1 9.4188 2.9254 -0.9085 47 1 10.0043 3.2751 0.7356 48 1 8.7500 2.0378 0.4819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338237523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:49 Heat of formation + Delta-G solvation = 8.983983 kcal Electronic energy + Delta-G solvation = -27687.577074 eV Core-core repulsion = 23713.760866 eV Total energy + Delta-G solvation = -3973.816208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.93356 -38.36291 -37.41158 -36.46196 -35.34986 -34.54085 -33.72623 -32.61575 -31.73880 -29.80131 -28.21968 -27.21144 -26.26284 -24.85455 -23.71915 -23.17599 -20.90986 -20.78134 -20.08009 -19.33243 -17.92240 -17.12323 -16.92315 -16.56788 -16.38320 -16.21220 -15.89287 -15.45011 -15.21813 -14.83808 -14.50360 -14.12396 -14.06758 -13.84558 -13.69894 -13.47043 -13.26123 -13.10977 -12.89504 -12.50251 -12.41307 -12.39772 -12.17837 -12.13172 -11.97820 -11.87369 -11.55474 -11.44190 -11.34893 -10.91012 -10.89790 -10.83445 -10.60357 -10.48630 -10.13694 -9.88758 -9.76717 -9.43935 -9.12718 -8.37522 -8.26737 -6.02607 -4.04726 -0.58421 1.79496 2.15726 2.23514 2.94705 3.06097 3.30092 3.38008 3.42535 3.45299 3.48198 3.96033 4.04195 4.05301 4.32239 4.37497 4.44554 4.60420 4.62520 4.67153 4.79370 4.80653 4.90965 4.93360 5.02915 5.07572 5.14542 5.18351 5.22876 5.33676 5.33979 5.38738 5.40907 5.76041 5.83083 5.95834 6.05927 6.25403 6.52506 6.60241 6.74403 7.00221 7.09171 7.63134 7.75765 7.96794 8.39303 8.88675 9.02099 9.59707 11.08649 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.001807 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.175049 B =15490.196196 C =15919.437073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.612 4.612 3 S 2.420 3.580 4 O -0.927 6.927 5 O -0.933 6.933 6 C -0.619 4.619 7 C 0.082 3.918 8 N -0.443 5.443 9 C 0.009 3.991 10 C 0.335 3.665 11 N -0.319 5.319 12 N -0.286 5.286 13 C 0.205 3.795 14 C -0.035 4.035 15 C -0.103 4.103 16 C 0.022 3.978 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 N -0.481 5.481 26 C 0.072 3.928 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.045 0.955 43 H 0.017 0.983 44 H 0.021 0.979 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.100 0.900 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 -22.594 -12.789 33.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.742 4.742 3 S 2.600 3.400 4 O -0.924 6.924 5 O -0.930 6.930 6 C -0.747 4.747 7 C -0.046 4.046 8 N -0.167 5.167 9 C -0.138 4.138 10 C -0.022 4.022 11 N -0.164 5.164 12 N -0.124 5.124 13 C -0.062 4.062 14 C -0.075 4.075 15 C -0.142 4.142 16 C -0.015 4.015 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.209 1.209 25 N -0.176 5.176 26 C -0.071 4.071 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.096 0.904 47 H 0.119 0.881 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.740 -21.015 -12.284 32.637 hybrid contribution 1.851 -1.610 0.289 2.470 sum -19.889 -22.625 -11.995 32.425 Atomic orbital electron populations 1.21531 0.90182 1.04981 1.03983 1.30207 1.07709 1.24624 1.11617 1.08138 0.77803 0.78331 0.75699 1.93630 1.80618 1.72803 1.45382 1.93609 1.80762 1.72971 1.45626 1.30559 1.25005 1.06783 1.12367 1.21650 0.84549 0.92939 1.05440 1.58614 1.05818 1.17416 1.34832 1.22772 1.02564 1.00021 0.88478 1.22408 0.81817 0.92198 1.05764 1.74562 1.24668 0.95137 1.22033 1.74020 0.95822 1.23586 1.18976 1.25330 0.99122 0.79954 1.01825 1.20369 0.86253 0.99938 1.00943 1.21662 1.00838 1.00767 0.90923 1.19110 0.89718 0.95639 0.97020 1.21265 1.05143 1.36039 0.93424 0.92645 1.25010 0.96585 0.95340 0.97478 1.69969 1.12686 1.37468 1.33298 0.86545 0.78360 0.77797 0.85358 1.19756 1.21064 1.20937 1.46045 1.06033 1.09830 1.55688 1.22173 0.90801 0.90692 1.03435 0.90625 0.90710 0.89969 0.84981 0.84807 0.84754 0.83695 0.87186 0.91083 0.90128 0.89358 0.93596 0.90381 0.88352 0.92344 0.93581 0.96507 0.96099 0.93044 0.90395 0.88104 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.92 37.16 0.37 -0.22 16 2 C -0.61 -1.70 6.52 37.16 0.24 -1.46 16 3 S 2.42 15.83 4.72 -107.50 -0.51 15.33 16 4 O -0.93 -10.01 18.10 -57.83 -1.05 -11.05 16 5 O -0.93 -9.40 18.10 -57.83 -1.05 -10.44 16 6 C -0.62 -3.08 5.74 37.16 0.21 -2.86 16 7 C 0.08 0.81 4.45 -3.82 -0.02 0.79 16 8 N -0.44 -4.66 4.81 -182.37 -0.88 -5.53 16 9 C 0.01 0.06 9.17 60.07 0.55 0.61 16 10 C 0.33 4.86 7.20 -318.87 -2.30 2.57 16 11 N -0.32 -5.74 11.16 30.32 0.34 -5.40 16 12 N -0.29 -5.51 12.18 32.99 0.40 -5.11 16 13 C 0.21 3.45 7.32 -154.02 -1.13 2.32 16 14 C -0.04 -0.58 5.42 -27.88 -0.15 -0.73 16 15 C -0.10 -2.07 5.13 -26.74 -0.14 -2.21 16 16 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 N -0.48 -6.64 3.21 -121.45 -0.39 -7.03 16 26 C 0.07 0.66 9.21 59.85 0.55 1.21 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 31 H 0.13 0.11 8.14 -51.92 -0.42 -0.32 16 32 H 0.13 0.25 6.47 -51.93 -0.34 -0.09 16 33 H 0.14 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.11 1.29 7.75 -51.93 -0.40 0.89 16 35 H 0.07 0.72 8.12 -51.92 -0.42 0.29 16 36 H 0.08 0.48 5.42 -51.93 -0.28 0.20 16 37 H 0.09 0.34 6.30 -51.93 -0.33 0.01 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 1.12 7.92 -51.93 -0.41 0.70 16 40 H 0.10 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 47 H 0.10 0.96 7.88 -51.93 -0.41 0.55 16 48 H 0.09 0.68 7.57 -51.93 -0.39 0.28 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -40.02 405.08 -11.66 -51.68 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -8.01 Total: -6.45 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.35 Total: -12.93 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 0.21 Total: -48.81 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -2.09 Total: -21.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 15.83 SS G_CDS: -0.51 Total: 15.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -40.02 -11.66 -51.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.665 kcal (2) G-P(sol) polarization free energy of solvation -40.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds