Wall clock time and date at job start Wed Apr 1 2020 03:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81397 * 109.47133 * 2 1 4 4 O 1.42102 * 108.58180 * 65.51106 * 3 2 1 5 5 O 1.42103 * 108.57662 * 294.48993 * 3 2 1 6 6 C 1.81397 * 101.91968 * 180.02562 * 3 2 1 7 7 C 1.53004 * 109.47001 * 180.02562 * 6 3 2 8 8 N 1.46896 * 109.47206 * 179.97438 * 7 6 3 9 9 C 1.46905 * 111.00279 * 66.04296 * 8 7 6 10 10 C 1.38589 * 111.00031 * 189.99752 * 8 7 6 11 11 N 1.31214 * 126.47321 * 0.02562 * 10 8 7 12 12 N 1.28527 * 109.85861 * 179.74117 * 11 10 8 13 13 C 1.30288 * 110.05517 * 359.97438 * 12 11 10 14 14 C 1.50706 * 126.34930 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.46861 * 89.97908 * 14 13 12 16 16 C 1.52999 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47513 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99752 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00324 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99723 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00175 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47389 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47261 * 119.99884 * 21 19 17 24 24 H 1.48503 * 109.47302 * 239.99571 * 21 19 17 25 25 N 1.36451 * 126.47197 * 179.71560 * 10 8 7 26 26 C 1.46506 * 127.13577 * 0.23829 * 25 10 8 27 27 H 1.09004 * 109.47353 * 299.99816 * 1 2 3 28 28 H 1.08997 * 109.47284 * 60.00153 * 1 2 3 29 29 H 1.09000 * 109.47653 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46982 * 239.99649 * 2 1 3 31 31 H 1.09004 * 109.46641 * 119.99883 * 2 1 3 32 32 H 1.08992 * 109.47473 * 59.99941 * 6 3 2 33 33 H 1.09004 * 109.47117 * 299.99044 * 6 3 2 34 34 H 1.08999 * 109.47362 * 59.99279 * 7 6 3 35 35 H 1.09008 * 109.47006 * 299.99571 * 7 6 3 36 36 H 1.08991 * 109.47322 * 183.95666 * 9 8 7 37 37 H 1.08997 * 109.46717 * 303.95743 * 9 8 7 38 38 H 1.09004 * 109.47145 * 63.95312 * 9 8 7 39 39 H 1.08998 * 109.47064 * 209.98253 * 14 13 12 40 40 H 1.09000 * 109.46741 * 329.97784 * 14 13 12 41 41 H 1.08998 * 109.47563 * 300.00039 * 15 14 13 42 42 H 1.09000 * 109.47543 * 60.00368 * 15 14 13 43 43 H 1.09002 * 109.47151 * 300.00238 * 16 15 14 44 44 H 1.09003 * 109.47404 * 59.99613 * 16 15 14 45 45 H 0.97000 * 119.99560 * 180.02562 * 20 19 17 46 46 H 1.08993 * 109.47504 * 90.03124 * 26 25 10 47 47 H 1.09004 * 109.46582 * 210.02524 * 26 25 10 48 48 H 1.08998 * 109.47068 * 330.02132 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7591 2.3232 -1.2258 6 6 3.9329 1.4718 -0.0008 7 6 4.6280 2.8348 -0.0002 8 7 6.0843 2.6418 -0.0003 9 6 6.5331 2.0211 -1.2538 10 6 6.7440 3.8397 0.2248 11 7 6.1877 5.0123 0.4178 12 7 7.0970 5.9022 0.6002 13 6 8.2775 5.3546 0.5354 14 6 9.5994 6.0600 0.6969 15 6 10.0074 6.0472 2.1714 16 6 11.3492 6.7639 2.3355 17 6 11.7515 6.7508 3.7878 18 1 11.1137 6.2788 4.5205 19 6 12.9332 7.3421 4.1812 20 7 13.7096 7.9172 3.2889 21 14 13.4315 7.3265 5.9814 22 1 12.3938 6.6216 6.7761 23 1 14.7306 6.6225 6.1293 24 1 13.5665 8.7224 6.4698 25 7 8.0946 4.0213 0.2935 26 6 9.1334 2.9995 0.1408 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.2252 0.9149 -0.8909 33 1 4.2259 0.9147 0.8891 34 1 4.3356 3.3915 0.8901 35 1 4.3351 3.3925 -0.8899 36 1 7.6039 1.8254 -1.1993 37 1 5.9995 1.0829 -1.4060 38 1 6.3287 2.6945 -2.0862 39 1 10.3587 5.5486 0.1053 40 1 9.5054 7.0906 0.3548 41 1 9.2481 6.5585 2.7630 42 1 10.1014 5.0165 2.5135 43 1 12.1088 6.2529 1.7438 44 1 11.2549 7.7945 1.9935 45 1 14.5412 8.3329 3.5657 46 1 9.4188 2.9254 -0.9085 47 1 10.0043 3.2751 0.7356 48 1 8.7500 2.0378 0.4819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338237523.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:49 Heat of formation + Delta-G solvation = -19.328628 kcal Electronic energy + Delta-G solvation = -27688.804801 eV Core-core repulsion = 23713.760866 eV Total energy + Delta-G solvation = -3975.043935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.10297 -39.17791 -38.03348 -37.07540 -36.79617 -35.89587 -34.41540 -33.98730 -32.62887 -31.12490 -29.33604 -28.40141 -27.20028 -25.52460 -25.31151 -23.87779 -22.44176 -21.82928 -21.45334 -19.85341 -18.71250 -18.40756 -17.86741 -17.67805 -17.29468 -17.09046 -16.61346 -16.56613 -16.12546 -16.05140 -15.60261 -15.20184 -15.07526 -14.59194 -14.44322 -14.25511 -14.06327 -13.91725 -13.82847 -13.60274 -13.32637 -13.27701 -13.16230 -13.06192 -12.79343 -12.71580 -12.66549 -12.59649 -12.46533 -12.41315 -12.32444 -11.92501 -11.75199 -11.54532 -11.39345 -11.28439 -11.24076 -11.18672 -10.83135 -10.54237 -9.40811 -8.19616 -6.29473 -1.04501 0.68255 1.15401 1.39266 1.41125 1.53277 1.71187 1.82672 2.40889 2.42829 2.76489 3.06502 3.13975 3.33626 3.42353 3.62390 3.69208 3.77987 3.80510 3.97426 4.01701 4.25349 4.27003 4.29326 4.31517 4.35369 4.44299 4.46958 4.51212 4.58046 4.62761 4.71917 4.76899 4.85203 4.88984 4.93839 5.02774 5.08131 5.15348 5.16817 5.37713 5.46429 5.52505 5.74648 5.86031 6.05526 6.26386 6.86449 7.39339 7.66580 8.91849 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022427 B = 0.001807 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.175049 B =15490.196196 C =15919.437073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.581 4.581 3 S 2.404 3.596 4 O -0.986 6.986 5 O -0.981 6.981 6 C -0.600 4.600 7 C 0.071 3.929 8 N -0.435 5.435 9 C -0.001 4.001 10 C 0.347 3.653 11 N -0.367 5.367 12 N -0.329 5.329 13 C 0.196 3.804 14 C -0.022 4.022 15 C -0.085 4.085 16 C 0.027 3.973 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.004 3.996 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.280 1.280 25 N -0.476 5.476 26 C 0.061 3.939 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.170 0.830 31 H 0.165 0.835 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.129 0.871 38 H 0.037 0.963 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.054 0.946 43 H 0.009 0.991 44 H -0.004 1.004 45 H 0.264 0.736 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.925 -27.014 -13.226 36.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.714 4.714 3 S 2.592 3.408 4 O -0.984 6.984 5 O -0.979 6.979 6 C -0.729 4.729 7 C -0.058 4.058 8 N -0.159 5.159 9 C -0.146 4.146 10 C -0.010 4.010 11 N -0.211 5.211 12 N -0.167 5.167 13 C -0.074 4.074 14 C -0.061 4.061 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.206 1.206 25 N -0.170 5.170 26 C -0.080 4.080 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.188 0.812 31 H 0.183 0.817 32 H 0.195 0.805 33 H 0.190 0.810 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.148 0.852 38 H 0.056 0.944 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.027 0.973 44 H 0.014 0.986 45 H 0.073 0.927 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.200 -25.416 -12.734 35.462 hybrid contribution 1.641 -0.381 0.380 1.727 sum -19.560 -25.797 -12.355 34.651 Atomic orbital electron populations 1.21726 0.91190 1.06242 1.03345 1.29966 1.06644 1.19678 1.15079 1.08213 0.78570 0.80389 0.73677 1.93559 1.81917 1.75823 1.47058 1.93547 1.81858 1.75735 1.46716 1.30400 1.22198 1.04460 1.15849 1.21692 0.84741 0.95735 1.03583 1.58851 1.05702 1.14737 1.36638 1.23069 1.04257 1.01123 0.86188 1.22889 0.82231 0.92646 1.03262 1.74457 1.25368 0.96626 1.24670 1.73900 0.97059 1.25386 1.20346 1.25118 0.98267 0.81402 1.02598 1.20134 0.87122 1.00271 0.98598 1.21351 0.97570 1.00110 0.93381 1.18990 0.91902 0.94662 0.95451 1.21688 1.05458 1.36160 0.94926 0.92853 1.25874 0.96604 0.94864 1.02071 1.70076 1.13172 1.38140 1.35437 0.85480 0.78292 0.77933 0.79829 1.19151 1.19958 1.20575 1.46201 1.06598 1.09493 1.54750 1.22594 0.89576 0.90269 1.05532 0.91694 0.91348 0.87533 0.81211 0.81705 0.80503 0.80962 0.90298 0.92238 0.88560 0.85243 0.94391 0.87649 0.89014 0.94416 0.92716 0.97262 0.98555 0.92734 0.87431 0.88388 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 9.92 71.98 0.71 -0.24 16 2 C -0.58 -1.03 6.52 71.98 0.47 -0.56 16 3 S 2.40 29.92 4.72 -56.49 -0.27 29.65 16 4 O -0.99 -22.70 18.10 -127.37 -2.31 -25.00 16 5 O -0.98 -20.40 18.10 -127.37 -2.30 -22.71 16 6 C -0.60 -4.20 5.74 71.98 0.41 -3.78 16 7 C 0.07 1.36 4.45 86.31 0.38 1.74 16 8 N -0.44 -8.24 4.81 -730.91 -3.51 -11.75 16 9 C 0.00 -0.01 9.17 127.69 1.17 1.17 16 10 C 0.35 9.92 7.20 260.11 1.87 11.80 16 11 N -0.37 -13.75 11.16 -58.00 -0.65 -14.40 16 12 N -0.33 -13.25 12.18 -49.54 -0.60 -13.85 16 13 C 0.20 6.62 7.32 137.64 1.01 7.62 16 14 C -0.02 -0.72 5.42 29.85 0.16 -0.55 16 15 C -0.09 -3.48 5.13 30.59 0.16 -3.33 16 16 C 0.03 1.38 4.97 29.85 0.15 1.53 16 17 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 19 C 0.00 0.23 5.46 84.65 0.46 0.69 16 20 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 21 Si 0.96 44.27 29.54 68.60 2.03 46.29 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 N -0.48 -12.55 3.21 -538.17 -1.73 -14.27 16 26 C 0.06 0.93 9.21 127.77 1.18 2.10 16 27 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 30 H 0.17 -0.86 8.14 -2.39 -0.02 -0.88 16 31 H 0.17 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.18 -0.32 6.47 -2.39 -0.02 -0.33 16 33 H 0.17 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.08 1.99 7.75 -2.39 -0.02 1.98 16 35 H 0.06 1.25 8.12 -2.38 -0.02 1.23 16 36 H 0.10 0.69 5.42 -2.39 -0.01 0.68 16 37 H 0.13 0.23 6.30 -2.39 -0.02 0.22 16 38 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.11 2.88 7.92 -2.39 -0.02 2.86 16 40 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 41 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.11 1.03 7.86 -2.39 -0.02 1.01 16 47 H 0.10 1.60 7.88 -2.38 -0.02 1.59 16 48 H 0.11 1.22 7.57 -2.39 -0.02 1.20 16 Total: -1.00 -93.71 405.08 0.25 -93.46 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 0.94 Total: 0.12 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 8.37 Total: -12.44 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -6.20 Total: -109.37 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -4.61 Total: -47.71 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 29.92 SS G_CDS: -0.27 Total: 29.65 kcal Total: -93.71 0.25 -93.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338237523.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.126 kcal (2) G-P(sol) polarization free energy of solvation -93.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds