Wall clock time and date at job start Wed Apr 1 2020 03:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.36734 * 127.13963 * 275.53394 * 3 2 1 5 5 C 1.50700 * 126.34441 * 359.97429 * 4 3 2 6 6 C 1.53003 * 109.47346 * 270.02266 * 5 4 3 7 7 C 1.50700 * 109.46967 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99878 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00200 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99780 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46868 * 120.00497 * 11 9 7 14 14 H 1.48500 * 109.47239 * 239.99830 * 11 9 7 15 15 N 1.30296 * 107.31081 * 180.02562 * 4 3 2 16 16 N 1.28532 * 110.04924 * 359.97438 * 15 4 3 17 17 C 1.31214 * 109.86153 * 0.02562 * 16 15 4 18 18 N 1.38581 * 126.47252 * 179.73650 * 17 16 15 19 19 C 1.46903 * 110.99701 * 107.09358 * 18 17 16 20 20 C 1.46898 * 110.99947 * 343.14232 * 18 17 16 21 21 C 1.52999 * 109.47381 * 189.99827 * 20 18 17 22 22 S 1.81395 * 109.47474 * 179.97438 * 21 20 18 23 23 O 1.42098 * 108.57885 * 294.48842 * 22 21 20 24 24 O 1.42095 * 108.57823 * 65.51507 * 22 21 20 25 25 C 1.81406 * 101.92177 * 180.02562 * 22 21 20 26 26 C 1.53005 * 109.46901 * 179.97438 * 25 22 21 27 27 H 1.09002 * 109.46894 * 186.18511 * 1 2 3 28 28 H 1.09003 * 109.46907 * 306.17899 * 1 2 3 29 29 H 1.08994 * 109.47104 * 66.17943 * 1 2 3 30 30 H 1.09000 * 109.47044 * 239.99956 * 2 1 3 31 31 H 1.09002 * 109.47146 * 120.00205 * 2 1 3 32 32 H 1.09006 * 109.47098 * 30.02631 * 5 4 3 33 33 H 1.09005 * 109.47304 * 150.02178 * 5 4 3 34 34 H 1.08997 * 109.47106 * 299.99666 * 6 5 4 35 35 H 1.08998 * 109.46742 * 60.00347 * 6 5 4 36 36 H 0.96994 * 120.00519 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.46969 * 65.72654 * 19 18 17 38 38 H 1.09004 * 109.46957 * 185.71905 * 19 18 17 39 39 H 1.08996 * 109.47456 * 305.71882 * 19 18 17 40 40 H 1.09000 * 109.47459 * 309.99670 * 20 18 17 41 41 H 1.09004 * 109.47363 * 69.99772 * 20 18 17 42 42 H 1.09006 * 109.47351 * 300.00225 * 21 20 18 43 43 H 1.09004 * 109.46917 * 59.99671 * 21 20 18 44 44 H 1.08996 * 109.47284 * 299.99936 * 25 22 21 45 45 H 1.08996 * 109.46858 * 59.99870 * 25 22 21 46 46 H 1.08996 * 109.47112 * 300.00057 * 26 25 22 47 47 H 1.08992 * 109.47002 * 60.00064 * 26 25 22 48 48 H 1.09001 * 109.46511 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1945 2.1945 -1.0849 5 6 1.9208 1.8369 -2.5231 6 6 3.1819 1.2371 -3.1484 7 6 2.9083 0.8801 -4.5867 8 1 1.9325 1.0623 -5.0122 9 6 3.9038 0.3208 -5.3595 10 7 5.0919 0.0985 -4.8414 11 14 3.5644 -0.1224 -7.1422 12 1 2.1607 0.2247 -7.4800 13 1 4.4874 0.6354 -8.0249 14 1 3.7758 -1.5790 -7.3390 15 7 2.6438 3.3357 -0.6450 16 7 2.7622 3.2991 0.6343 17 6 2.3921 2.1228 1.0827 18 7 2.3872 1.7097 2.4056 19 6 1.0162 1.6291 2.9268 20 6 3.2150 2.5943 3.2363 21 6 3.3892 1.9747 4.6244 22 16 4.4121 3.0666 5.6500 23 8 5.7190 3.1164 5.0944 24 8 3.7035 4.2792 5.8664 25 6 4.4844 2.1516 7.2147 26 6 5.3245 2.9352 8.2253 27 1 -0.3633 -1.0217 0.1107 28 1 -0.3633 0.6067 0.8295 29 1 -0.3633 0.4150 -0.9401 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.1110 1.1086 -2.5686 33 1 1.6342 2.7337 -3.0723 34 1 3.9916 1.9654 -3.1029 35 1 3.4684 0.3402 -2.5992 36 1 5.7921 -0.2953 -5.3849 37 1 0.4738 0.8424 2.4023 38 1 1.0454 1.4018 3.9924 39 1 0.5120 2.5831 2.7724 40 1 4.1920 2.7214 2.7700 41 1 2.7283 3.5651 3.3303 42 1 2.4122 1.8476 5.0908 43 1 3.8760 1.0040 4.5304 44 1 3.4755 2.0194 7.6053 45 1 4.9388 1.1757 7.0442 46 1 6.3334 3.0671 7.8345 47 1 4.8705 3.9113 8.3959 48 1 5.3683 2.3852 9.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339514372.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:42 Heat of formation + Delta-G solvation = 9.319259 kcal Electronic energy + Delta-G solvation = -28365.793365 eV Core-core repulsion = 24391.991696 eV Total energy + Delta-G solvation = -3973.801669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.67064 -38.12787 -37.30823 -36.35783 -35.63082 -34.02411 -33.64419 -32.18553 -31.37196 -30.41265 -28.87749 -26.78886 -25.25843 -24.70846 -23.96458 -23.01854 -21.67748 -20.44780 -19.86924 -19.22594 -17.81084 -16.98909 -16.80191 -16.52318 -16.23711 -16.13019 -15.63781 -15.30540 -14.94943 -14.71301 -14.50354 -14.35039 -13.82453 -13.66391 -13.45656 -13.13985 -13.04858 -13.02273 -12.75985 -12.47068 -12.38702 -12.31071 -12.30125 -12.05242 -11.99697 -11.72130 -11.40199 -11.36079 -11.24433 -11.07561 -11.01520 -10.79962 -10.68923 -10.42915 -10.03064 -9.92355 -9.75963 -9.33683 -9.21355 -8.42340 -8.12365 -6.06009 -4.10412 -0.47745 2.06406 2.34040 2.40108 3.18131 3.23246 3.28082 3.36213 3.39461 3.57898 3.66412 4.08709 4.13192 4.17117 4.40334 4.43786 4.62815 4.69466 4.71071 4.87414 4.93997 4.97568 5.01379 5.09954 5.14183 5.15301 5.22054 5.29967 5.35753 5.41738 5.44289 5.45729 5.50777 5.56805 5.75843 5.94002 6.15832 6.31709 6.44101 6.47274 6.65083 6.87935 7.36723 7.54563 7.68488 7.91358 8.28453 8.95991 9.14946 9.54322 11.05081 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002194 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.884547 B =12758.859507 C =13415.328891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.470 5.470 4 C 0.218 3.782 5 C -0.031 4.031 6 C 0.031 3.969 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.059 3.941 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.284 1.284 15 N -0.294 5.294 16 N -0.318 5.318 17 C 0.323 3.677 18 N -0.447 5.447 19 C 0.014 3.986 20 C 0.084 3.916 21 C -0.618 4.618 22 S 2.420 3.580 23 O -0.928 6.928 24 O -0.933 6.933 25 C -0.613 4.613 26 C -0.148 4.148 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.026 0.974 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.044 0.956 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.133 0.867 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.137 -2.505 26.807 28.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.164 5.164 4 C -0.049 4.049 5 C -0.071 4.071 6 C -0.007 4.007 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.143 4.143 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.209 1.209 14 H -0.211 1.211 15 N -0.133 5.133 16 N -0.163 5.163 17 C -0.034 4.034 18 N -0.171 5.171 19 C -0.134 4.134 20 C -0.045 4.045 21 C -0.746 4.746 22 S 2.600 3.400 23 O -0.925 6.925 24 O -0.930 6.930 25 C -0.742 4.742 26 C -0.206 4.206 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.032 0.968 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.152 0.848 43 H 0.162 0.838 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.890 -0.828 26.587 27.478 hybrid contribution -1.219 -2.016 -0.665 2.447 sum -8.108 -2.844 25.922 27.309 Atomic orbital electron populations 1.22246 0.94291 1.03123 1.03185 1.21892 0.95250 0.79262 1.05649 1.46251 1.50578 1.13632 1.05932 1.25617 0.99676 0.87191 0.92449 1.20467 1.02105 1.01945 0.82608 1.19080 0.90766 0.95775 0.95078 1.21164 0.97989 1.41306 0.95738 0.92240 1.25022 0.95029 0.95678 0.98602 1.69977 1.02845 1.43656 1.36495 0.86500 0.78423 0.77985 0.84861 1.19637 1.20913 1.21053 1.74025 1.18161 1.19122 1.01992 1.74519 1.22298 1.14704 1.04765 1.22211 1.04790 0.88904 0.87471 1.58540 1.12636 1.49449 0.96511 1.22763 0.87048 1.02247 1.01320 1.21609 1.00144 0.93802 0.88916 1.30557 1.16568 1.17423 1.10053 1.08138 0.76437 0.77382 0.78040 1.93628 1.36233 1.86146 1.76514 1.93606 1.74631 1.39779 1.84964 1.30213 1.09870 1.14108 1.20021 1.21526 0.99808 1.00368 0.98937 0.90282 0.92277 0.91275 0.87648 0.88564 0.91182 0.89266 0.95553 0.96767 0.92884 0.90168 0.89778 0.93763 0.87806 0.90941 0.84767 0.83768 0.85010 0.84833 0.90646 0.90736 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.00 37.16 0.37 -1.28 16 2 C 0.10 1.27 6.11 -4.04 -0.02 1.25 16 3 N -0.47 -7.78 2.81 -114.09 -0.32 -8.11 16 4 C 0.22 4.34 7.32 -154.02 -1.13 3.21 16 5 C -0.03 -0.64 5.47 -27.88 -0.15 -0.79 16 6 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 7 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 11 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 N -0.29 -6.48 12.18 32.99 0.40 -6.08 16 16 N -0.32 -6.44 11.42 30.32 0.35 -6.09 16 17 C 0.32 5.41 6.88 -318.87 -2.19 3.22 16 18 N -0.45 -5.54 4.74 -182.38 -0.86 -6.41 16 19 C 0.01 0.12 9.42 60.07 0.57 0.69 16 20 C 0.08 0.97 4.38 -3.83 -0.02 0.95 16 21 C -0.62 -3.95 5.75 37.16 0.21 -3.74 16 22 S 2.42 18.83 4.72 -107.50 -0.51 18.33 16 23 O -0.93 -11.24 18.10 -57.83 -1.05 -12.28 16 24 O -0.93 -10.51 18.10 -57.83 -1.05 -11.56 16 25 C -0.61 -2.32 6.53 37.16 0.24 -2.08 16 26 C -0.15 -0.71 9.92 37.16 0.37 -0.34 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.54 6.08 -51.93 -0.32 0.22 16 29 H 0.07 0.75 7.78 -51.93 -0.40 0.34 16 30 H 0.11 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 32 H 0.07 1.25 7.61 -51.93 -0.40 0.85 16 33 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 0.65 5.27 -51.93 -0.27 0.37 16 38 H 0.08 0.47 6.09 -51.93 -0.32 0.15 16 39 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 40 H 0.10 1.40 8.00 -51.93 -0.42 0.99 16 41 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 42 H 0.13 0.43 6.37 -51.92 -0.33 0.10 16 43 H 0.14 0.65 8.14 -51.92 -0.42 0.22 16 44 H 0.13 0.18 8.14 -51.93 -0.42 -0.25 16 45 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -39.38 404.57 -11.43 -50.81 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -7.90 Total: -3.80 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -2.30 Total: -11.26 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.30 Total: -52.45 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -2.09 Total: -23.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 18.83 SS G_CDS: -0.51 Total: 18.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -39.38 -11.43 -50.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339514372.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.125 kcal (2) G-P(sol) polarization free energy of solvation -39.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds