Wall clock time and date at job start Wed Apr 1 2020 03:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.36734 * 127.13963 * 275.53394 * 3 2 1 5 5 C 1.50700 * 126.34441 * 359.97429 * 4 3 2 6 6 C 1.53003 * 109.47346 * 270.02266 * 5 4 3 7 7 C 1.50700 * 109.46967 * 180.02562 * 6 5 4 8 8 H 1.08002 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99878 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00200 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99780 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47312 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46868 * 120.00497 * 11 9 7 14 14 H 1.48500 * 109.47239 * 239.99830 * 11 9 7 15 15 N 1.30296 * 107.31081 * 180.02562 * 4 3 2 16 16 N 1.28532 * 110.04924 * 359.97438 * 15 4 3 17 17 C 1.31214 * 109.86153 * 0.02562 * 16 15 4 18 18 N 1.38581 * 126.47252 * 179.73650 * 17 16 15 19 19 C 1.46903 * 110.99701 * 107.09358 * 18 17 16 20 20 C 1.46898 * 110.99947 * 343.14232 * 18 17 16 21 21 C 1.52999 * 109.47381 * 189.99827 * 20 18 17 22 22 S 1.81395 * 109.47474 * 179.97438 * 21 20 18 23 23 O 1.42098 * 108.57885 * 294.48842 * 22 21 20 24 24 O 1.42095 * 108.57823 * 65.51507 * 22 21 20 25 25 C 1.81406 * 101.92177 * 180.02562 * 22 21 20 26 26 C 1.53005 * 109.46901 * 179.97438 * 25 22 21 27 27 H 1.09002 * 109.46894 * 186.18511 * 1 2 3 28 28 H 1.09003 * 109.46907 * 306.17899 * 1 2 3 29 29 H 1.08994 * 109.47104 * 66.17943 * 1 2 3 30 30 H 1.09000 * 109.47044 * 239.99956 * 2 1 3 31 31 H 1.09002 * 109.47146 * 120.00205 * 2 1 3 32 32 H 1.09006 * 109.47098 * 30.02631 * 5 4 3 33 33 H 1.09005 * 109.47304 * 150.02178 * 5 4 3 34 34 H 1.08997 * 109.47106 * 299.99666 * 6 5 4 35 35 H 1.08998 * 109.46742 * 60.00347 * 6 5 4 36 36 H 0.96994 * 120.00519 * 179.97438 * 10 9 7 37 37 H 1.08996 * 109.46969 * 65.72654 * 19 18 17 38 38 H 1.09004 * 109.46957 * 185.71905 * 19 18 17 39 39 H 1.08996 * 109.47456 * 305.71882 * 19 18 17 40 40 H 1.09000 * 109.47459 * 309.99670 * 20 18 17 41 41 H 1.09004 * 109.47363 * 69.99772 * 20 18 17 42 42 H 1.09006 * 109.47351 * 300.00225 * 21 20 18 43 43 H 1.09004 * 109.46917 * 59.99671 * 21 20 18 44 44 H 1.08996 * 109.47284 * 299.99936 * 25 22 21 45 45 H 1.08996 * 109.46858 * 59.99870 * 25 22 21 46 46 H 1.08996 * 109.47112 * 300.00057 * 26 25 22 47 47 H 1.08992 * 109.47002 * 60.00064 * 26 25 22 48 48 H 1.09001 * 109.46511 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1945 2.1945 -1.0849 5 6 1.9208 1.8369 -2.5231 6 6 3.1819 1.2371 -3.1484 7 6 2.9083 0.8801 -4.5867 8 1 1.9325 1.0623 -5.0122 9 6 3.9038 0.3208 -5.3595 10 7 5.0919 0.0985 -4.8414 11 14 3.5644 -0.1224 -7.1422 12 1 2.1607 0.2247 -7.4800 13 1 4.4874 0.6354 -8.0249 14 1 3.7758 -1.5790 -7.3390 15 7 2.6438 3.3357 -0.6450 16 7 2.7622 3.2991 0.6343 17 6 2.3921 2.1228 1.0827 18 7 2.3872 1.7097 2.4056 19 6 1.0162 1.6291 2.9268 20 6 3.2150 2.5943 3.2363 21 6 3.3892 1.9747 4.6244 22 16 4.4121 3.0666 5.6500 23 8 5.7190 3.1164 5.0944 24 8 3.7035 4.2792 5.8664 25 6 4.4844 2.1516 7.2147 26 6 5.3245 2.9352 8.2253 27 1 -0.3633 -1.0217 0.1107 28 1 -0.3633 0.6067 0.8295 29 1 -0.3633 0.4150 -0.9401 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.1110 1.1086 -2.5686 33 1 1.6342 2.7337 -3.0723 34 1 3.9916 1.9654 -3.1029 35 1 3.4684 0.3402 -2.5992 36 1 5.7921 -0.2953 -5.3849 37 1 0.4738 0.8424 2.4023 38 1 1.0454 1.4018 3.9924 39 1 0.5120 2.5831 2.7724 40 1 4.1920 2.7214 2.7700 41 1 2.7283 3.5651 3.3303 42 1 2.4122 1.8476 5.0908 43 1 3.8760 1.0040 4.5304 44 1 3.4755 2.0194 7.6053 45 1 4.9388 1.1757 7.0442 46 1 6.3334 3.0671 7.8345 47 1 4.8705 3.9113 8.3959 48 1 5.3683 2.3852 9.1653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339514372.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:41 Heat of formation + Delta-G solvation = -18.848475 kcal Electronic energy + Delta-G solvation = -28367.014809 eV Core-core repulsion = 24391.991696 eV Total energy + Delta-G solvation = -3975.023114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.07807 -39.12427 -38.03643 -37.07826 -36.90882 -35.88751 -33.98796 -33.81729 -32.47430 -31.49455 -30.35136 -27.95612 -26.81735 -25.41693 -25.00714 -24.00187 -23.37678 -21.58527 -21.34932 -19.85681 -18.75588 -18.53807 -17.83927 -17.67295 -17.22352 -17.04078 -16.60399 -16.47016 -16.13373 -15.99017 -15.33708 -15.15655 -14.98306 -14.84147 -14.52361 -14.30275 -14.04371 -14.00595 -13.64612 -13.48827 -13.31106 -13.16853 -13.13817 -13.06475 -12.89801 -12.82118 -12.60724 -12.49020 -12.38186 -12.32677 -12.26904 -12.10187 -11.93205 -11.81161 -11.49871 -11.29165 -11.27530 -11.15980 -10.65361 -10.58991 -9.50023 -8.20996 -6.33701 -1.04423 0.70999 1.18084 1.42263 1.44157 1.56880 1.73745 1.82765 2.40869 2.44258 2.78454 3.06278 3.13288 3.42113 3.43307 3.63833 3.68464 3.78153 3.84643 3.96066 3.99607 4.02852 4.25673 4.30670 4.33282 4.38688 4.44664 4.48532 4.59268 4.62160 4.67705 4.75852 4.76909 4.79139 4.83041 4.88691 4.92040 5.10306 5.15392 5.21930 5.41622 5.43204 5.49462 5.57648 5.77599 6.10071 6.16053 6.82656 7.36557 7.68100 8.91427 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018941 B = 0.002194 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.884547 B =12758.859507 C =13415.328891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.465 5.465 4 C 0.201 3.799 5 C -0.014 4.014 6 C 0.043 3.957 7 C -0.537 4.537 8 H 0.074 0.926 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.255 1.255 13 H -0.285 1.285 14 H -0.277 1.277 15 N -0.335 5.335 16 N -0.363 5.363 17 C 0.341 3.659 18 N -0.438 5.438 19 C 0.006 3.994 20 C 0.072 3.928 21 C -0.599 4.599 22 S 2.403 3.597 23 O -0.989 6.989 24 O -0.981 6.981 25 C -0.579 4.579 26 C -0.166 4.166 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.087 0.913 34 H -0.020 1.020 35 H -0.005 1.005 36 H 0.263 0.737 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.178 0.822 43 H 0.172 0.828 44 H 0.171 0.829 45 H 0.165 0.835 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 -5.618 28.916 31.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.159 5.159 4 C -0.068 4.068 5 C -0.053 4.053 6 C 0.004 3.996 7 C -0.575 4.575 8 H 0.092 0.908 9 C -0.199 4.199 10 N -0.576 5.576 11 Si 0.794 3.206 12 H -0.178 1.178 13 H -0.211 1.211 14 H -0.203 1.203 15 N -0.174 5.174 16 N -0.207 5.207 17 C -0.017 4.017 18 N -0.163 5.163 19 C -0.140 4.140 20 C -0.057 4.057 21 C -0.728 4.728 22 S 2.590 3.410 23 O -0.986 6.986 24 O -0.978 6.978 25 C -0.712 4.712 26 C -0.225 4.225 27 H 0.129 0.871 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.105 0.895 34 H -0.002 1.002 35 H 0.013 0.987 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.147 0.853 39 H 0.051 0.949 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.196 0.804 43 H 0.190 0.810 44 H 0.189 0.811 45 H 0.183 0.817 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.713 -3.915 28.679 30.531 hybrid contribution -0.325 -1.112 -1.124 1.614 sum -10.038 -5.026 27.555 29.754 Atomic orbital electron populations 1.22225 0.91613 1.05227 1.02903 1.22278 0.97426 0.76932 1.06137 1.46440 1.49997 1.14663 1.04807 1.25358 1.00746 0.87683 0.92995 1.20153 1.00217 1.02161 0.82811 1.18840 0.91733 0.93833 0.95159 1.21611 0.98610 1.40718 0.96521 0.90793 1.26033 0.94679 0.95562 1.03669 1.70132 1.04069 1.44833 1.38516 0.85321 0.78919 0.77776 0.78543 1.17836 1.21079 1.20253 1.73896 1.19257 1.20948 1.03282 1.74415 1.24876 1.17210 1.04188 1.22749 1.01727 0.87893 0.89338 1.58841 1.14845 1.48354 0.94302 1.23041 0.84569 1.02285 1.04125 1.21663 0.98329 0.94216 0.91475 1.30410 1.18846 1.17366 1.06213 1.08252 0.75141 0.77819 0.79766 1.93556 1.38997 1.87338 1.78683 1.93544 1.74932 1.43334 1.85992 1.29956 1.12505 1.13753 1.14990 1.21727 0.99482 1.00918 1.00334 0.87085 0.91369 0.92551 0.89098 0.86158 0.88309 0.89463 1.00206 0.98699 0.92793 0.88734 0.85287 0.94860 0.91119 0.92156 0.80390 0.80977 0.81081 0.81684 0.91768 0.91323 0.87404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.00 71.98 0.72 -1.93 16 2 C 0.09 2.16 6.11 86.38 0.53 2.69 16 3 N -0.47 -15.44 2.81 -514.86 -1.45 -16.88 16 4 C 0.20 8.32 7.32 137.64 1.01 9.33 16 5 C -0.01 -0.57 5.47 29.85 0.16 -0.41 16 6 C 0.04 2.26 4.96 29.85 0.15 2.41 16 7 C -0.54 -29.58 9.11 25.60 0.23 -29.34 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 10 N -0.94 -57.29 13.29 21.45 0.28 -57.01 16 11 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 12 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 15 N -0.34 -15.65 12.18 -49.54 -0.60 -16.25 16 16 N -0.36 -15.48 11.42 -58.00 -0.66 -16.14 16 17 C 0.34 11.52 6.88 260.11 1.79 13.31 16 18 N -0.44 -10.17 4.74 -730.92 -3.47 -13.64 16 19 C 0.01 0.08 9.42 127.69 1.20 1.28 16 20 C 0.07 1.65 4.38 86.30 0.38 2.02 16 21 C -0.60 -5.95 5.75 71.98 0.41 -5.53 16 22 S 2.40 35.92 4.72 -56.49 -0.27 35.65 16 23 O -0.99 -25.50 18.10 -127.37 -2.30 -27.81 16 24 O -0.98 -22.72 18.10 -127.37 -2.31 -25.03 16 25 C -0.58 -2.08 6.53 71.98 0.47 -1.61 16 26 C -0.17 -1.22 9.92 71.98 0.71 -0.50 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.00 6.08 -2.39 -0.01 0.99 16 29 H 0.06 1.09 7.78 -2.39 -0.02 1.07 16 30 H 0.09 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.12 2.20 8.10 -2.39 -0.02 2.18 16 32 H 0.10 3.48 7.61 -2.38 -0.02 3.46 16 33 H 0.09 3.62 8.14 -2.38 -0.02 3.60 16 34 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 35 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 36 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 37 H 0.09 1.11 5.27 -2.39 -0.01 1.10 16 38 H 0.13 0.68 6.09 -2.38 -0.01 0.67 16 39 H 0.03 0.58 8.11 -2.39 -0.02 0.56 16 40 H 0.07 2.08 8.00 -2.39 -0.02 2.06 16 41 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 42 H 0.18 0.15 6.37 -2.39 -0.02 0.13 16 43 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.17 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.17 -0.30 8.14 -2.39 -0.02 -0.32 16 46 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -94.60 404.57 0.43 -94.17 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.94 Total: 5.38 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 8.23 Total: -7.91 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.89 Total: -119.92 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -4.61 Total: -52.83 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 35.92 SS G_CDS: -0.27 Total: 35.65 kcal Total: -94.60 0.43 -94.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339514372.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.319 kcal (2) G-P(sol) polarization free energy of solvation -94.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds