Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47402 * 2 1 4 4 C 1.52998 * 109.47268 * 240.00017 * 2 1 3 5 5 S 1.81404 * 109.47447 * 180.02562 * 4 2 1 6 6 C 1.81394 * 101.92333 * 179.97438 * 5 4 2 7 7 O 1.42106 * 108.57568 * 294.49020 * 5 4 2 8 8 O 1.42099 * 108.57943 * 65.50776 * 5 4 2 9 9 N 1.46904 * 109.47108 * 120.00167 * 2 1 3 10 10 C 1.46900 * 111.00112 * 58.95264 * 9 2 1 11 11 C 1.38578 * 111.00060 * 294.99830 * 9 2 1 12 12 N 1.31216 * 126.47366 * 102.79297 * 11 9 2 13 13 N 1.28527 * 109.86239 * 179.82427 * 12 11 9 14 14 C 1.30301 * 110.05352 * 0.45393 * 13 12 11 15 15 C 1.50695 * 126.34574 * 179.69331 * 14 13 12 16 16 C 1.53010 * 109.46845 * 270.03692 * 15 14 13 17 17 C 1.52999 * 109.46827 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47057 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99971 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00127 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00034 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99970 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47126 * 89.99529 * 22 20 18 24 24 H 1.48499 * 109.47196 * 209.99758 * 22 20 18 25 25 H 1.48501 * 109.47021 * 329.99805 * 22 20 18 26 26 N 1.36451 * 126.47329 * 283.10715 * 11 9 2 27 27 C 1.46503 * 127.13749 * 0.02562 * 26 11 9 28 28 H 1.09002 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47096 * 299.99993 * 1 2 3 30 30 H 1.08995 * 109.47211 * 59.99686 * 1 2 3 31 31 H 1.09000 * 109.47275 * 299.99920 * 4 2 1 32 32 H 1.09003 * 109.47038 * 59.99806 * 4 2 1 33 33 H 1.09006 * 109.46832 * 59.99882 * 6 5 4 34 34 H 1.09005 * 109.47006 * 179.97438 * 6 5 4 35 35 H 1.08993 * 109.47329 * 299.99747 * 6 5 4 36 36 H 1.09000 * 109.47097 * 49.40509 * 10 9 2 37 37 H 1.09010 * 109.46944 * 169.40539 * 10 9 2 38 38 H 1.08997 * 109.46953 * 289.40371 * 10 9 2 39 39 H 1.08999 * 109.47440 * 30.04103 * 15 14 13 40 40 H 1.08997 * 109.46923 * 150.04360 * 15 14 13 41 41 H 1.09003 * 109.47046 * 300.00150 * 16 15 14 42 42 H 1.08997 * 109.46814 * 60.00601 * 16 15 14 43 43 H 1.08999 * 109.47298 * 300.00313 * 17 16 15 44 44 H 1.09009 * 109.47225 * 60.00211 * 17 16 15 45 45 H 0.97001 * 119.99967 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.47019 * 92.24297 * 27 26 11 47 47 H 1.09001 * 109.46772 * 212.23756 * 27 26 11 48 48 H 1.08998 * 109.47092 * 332.23908 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 16 3.8540 -0.7219 -1.2489 6 6 4.2287 -1.6099 -2.7856 7 8 4.3072 0.6187 -1.3779 8 8 4.3063 -1.5046 -0.1525 9 7 2.0196 -0.6925 1.1994 10 6 1.5283 -2.0761 1.2460 11 6 1.6697 -0.0024 2.3491 12 7 0.6996 -0.3085 3.1779 13 7 0.6602 0.5447 4.1383 14 6 1.5890 1.4439 3.9754 15 6 1.8660 2.6159 4.8813 16 6 1.0419 3.8209 4.4228 17 6 1.3237 5.0109 5.3421 18 6 0.5126 6.1979 4.8901 19 1 -0.1391 6.1118 4.0332 20 6 0.6015 7.3933 5.5713 21 7 -0.1067 8.4290 5.1772 22 14 1.7280 7.5419 7.0539 23 1 3.0757 7.9801 6.6098 24 1 1.1703 8.5402 8.0014 25 1 1.8338 6.2236 7.7293 26 7 2.2651 1.1274 2.8298 27 6 3.3942 1.8514 2.2405 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.8014 -1.0700 -3.6306 34 1 5.3093 -1.6816 -2.9096 35 1 3.8007 -2.6113 -2.7402 36 1 1.7124 -2.5596 0.2865 37 1 2.0498 -2.6207 2.0333 38 1 0.4581 -2.0749 1.4527 39 1 1.5929 2.3570 5.9043 40 1 2.9265 2.8642 4.8401 41 1 1.3151 4.0797 3.3997 42 1 -0.0186 3.5725 4.4640 43 1 1.0509 4.7523 6.3652 44 1 2.3843 5.2591 5.3005 45 1 -0.0439 9.2701 5.6562 46 1 3.0194 2.6335 1.5802 47 1 3.9913 2.3010 3.0338 48 1 4.0117 1.1585 1.6690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339564599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = -7.174373 kcal Electronic energy + Delta-G solvation = -29183.954013 eV Core-core repulsion = 25209.437126 eV Total energy + Delta-G solvation = -3974.516887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.10569 -39.83941 -37.83330 -36.86202 -36.79456 -35.85443 -34.48827 -33.44173 -31.36366 -30.39468 -29.15286 -28.56426 -28.49398 -27.40941 -25.39503 -23.13885 -22.29544 -21.56419 -21.21295 -19.66977 -18.92165 -18.48134 -17.88749 -17.67642 -17.26978 -16.80001 -16.69414 -16.40390 -16.11098 -15.76369 -15.51839 -14.91342 -14.69662 -14.49700 -14.40708 -14.24354 -13.96195 -13.90033 -13.84742 -13.71731 -13.38320 -13.35537 -13.13141 -12.90941 -12.84691 -12.82870 -12.73740 -12.61381 -12.55268 -12.27177 -11.88858 -11.80836 -11.76598 -11.65709 -11.48382 -11.35069 -11.28357 -11.16463 -10.73997 -10.59396 -9.45656 -8.27258 -6.31981 -0.85983 0.64996 1.19949 1.39452 1.42573 1.54481 1.69386 1.97503 2.39389 2.51367 2.76516 3.08653 3.23066 3.32473 3.39972 3.68705 3.71015 3.86035 3.98582 4.09227 4.12401 4.15177 4.19023 4.22538 4.29660 4.36175 4.44653 4.51436 4.54246 4.59924 4.61710 4.71665 4.76724 4.90882 4.94075 5.01582 5.02447 5.03381 5.05513 5.10424 5.40152 5.48923 5.55989 5.58984 5.68374 6.08339 6.29789 6.76061 7.32513 7.65751 8.89936 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.002523 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.014463 B =11096.623796 C =11659.702161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 H 0.088 0.912 4 C -0.602 4.602 5 S 2.413 3.587 6 C -0.644 4.644 7 O -0.987 6.987 8 O -0.956 6.956 9 N -0.458 5.458 10 C 0.030 3.970 11 C 0.348 3.652 12 N -0.340 5.340 13 N -0.324 5.324 14 C 0.193 3.807 15 C -0.027 4.027 16 C -0.082 4.082 17 C -0.009 4.009 18 C -0.534 4.534 19 H 0.024 0.976 20 C 0.000 4.000 21 N -0.955 5.955 22 Si 0.955 3.045 23 H -0.262 1.262 24 H -0.288 1.288 25 H -0.240 1.240 26 N -0.474 5.474 27 C 0.063 3.937 28 H 0.084 0.916 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.181 0.819 33 H 0.152 0.848 34 H 0.132 0.868 35 H 0.156 0.844 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.048 0.952 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.033 0.967 45 H 0.266 0.734 46 H 0.090 0.910 47 H 0.114 0.886 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.715 -26.000 -20.048 34.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 H 0.106 0.894 4 C -0.731 4.731 5 S 2.599 3.401 6 C -0.796 4.796 7 O -0.984 6.984 8 O -0.954 6.954 9 N -0.183 5.183 10 C -0.116 4.116 11 C -0.009 4.009 12 N -0.185 5.185 13 N -0.163 5.163 14 C -0.075 4.075 15 C -0.066 4.066 16 C -0.121 4.121 17 C -0.047 4.047 18 C -0.572 4.572 19 H 0.043 0.957 20 C -0.196 4.196 21 N -0.596 5.596 22 Si 0.777 3.223 23 H -0.187 1.187 24 H -0.214 1.214 25 H -0.163 1.163 26 N -0.167 5.167 27 C -0.078 4.078 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.110 0.890 31 H 0.190 0.810 32 H 0.199 0.801 33 H 0.170 0.830 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.051 0.949 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.132 0.868 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.662 -26.243 -18.833 34.015 hybrid contribution -0.301 1.140 -0.456 1.264 sum 10.361 -25.103 -19.289 33.310 Atomic orbital electron populations 1.22346 0.93968 1.04156 1.02566 1.21640 0.96346 0.97914 0.86551 0.89406 1.30492 1.25463 1.12529 1.04601 1.07796 0.78544 0.75517 0.78253 1.30186 1.13193 1.16168 1.20085 1.93557 1.79816 1.37305 1.87757 1.93590 1.79160 1.71535 1.51067 1.59149 1.57750 1.04145 0.97291 1.22535 0.99759 0.84177 1.05110 1.22550 0.92257 0.89011 0.97054 1.74435 1.16898 1.23365 1.03770 1.73929 1.19886 1.03018 1.19514 1.25178 0.93160 0.99921 0.89276 1.20234 1.02492 0.87143 0.96735 1.21216 0.98443 0.93218 0.99190 1.19523 0.96624 0.92516 0.95988 1.21484 1.25478 0.96375 1.13831 0.95722 1.26095 0.97396 0.95107 1.01001 1.70086 1.43544 1.03012 1.42971 0.85594 0.78832 0.79253 0.78596 1.18727 1.21434 1.16333 1.46288 1.28103 1.22253 1.20107 1.22421 0.86567 0.97687 1.01147 0.89711 0.95393 0.88995 0.81023 0.80122 0.82961 0.84969 0.82553 0.86552 0.91307 0.92945 0.87858 0.87344 0.93314 0.94307 0.95588 0.94895 0.92552 0.89183 0.86755 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.57 71.98 0.62 -2.22 16 2 C 0.08 1.34 2.37 44.91 0.11 1.44 16 3 H 0.09 1.62 7.76 -2.39 -0.02 1.60 16 4 C -0.60 -3.07 5.01 71.98 0.36 -2.71 16 5 S 2.41 24.43 5.24 -56.49 -0.30 24.13 16 6 C -0.64 -0.21 10.62 113.37 1.20 0.99 16 7 O -0.99 -18.87 18.10 -127.37 -2.31 -21.18 16 8 O -0.96 -17.35 16.79 -127.37 -2.14 -19.49 16 9 N -0.46 -9.88 3.46 -706.80 -2.44 -12.32 16 10 C 0.03 0.53 8.17 127.69 1.04 1.57 16 11 C 0.35 10.28 5.77 260.11 1.50 11.78 16 12 N -0.34 -11.96 11.03 -58.01 -0.64 -12.60 16 13 N -0.32 -12.42 12.18 -49.54 -0.60 -13.02 16 14 C 0.19 6.48 7.32 137.63 1.01 7.49 16 15 C -0.03 -0.83 5.59 29.85 0.17 -0.66 16 16 C -0.08 -3.21 5.14 30.60 0.16 -3.06 16 17 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 18 C -0.53 -31.09 9.66 25.60 0.25 -30.85 16 19 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 20 C 0.00 0.01 5.47 84.66 0.46 0.48 16 21 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 22 Si 0.95 43.88 27.47 68.60 1.88 45.77 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 26 N -0.47 -13.88 3.21 -538.18 -1.73 -15.61 16 27 C 0.06 1.42 10.68 127.77 1.36 2.78 16 28 H 0.08 1.13 6.63 -2.39 -0.02 1.11 16 29 H 0.03 0.70 7.21 -2.39 -0.02 0.68 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.17 -0.27 6.21 -2.39 -0.01 -0.28 16 32 H 0.18 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.15 -0.63 8.14 -2.39 -0.02 -0.65 16 34 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.16 -0.76 8.14 -2.39 -0.02 -0.78 16 36 H 0.12 0.96 5.84 -2.39 -0.01 0.94 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.05 0.99 6.42 -2.39 -0.02 0.97 16 39 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.11 2.71 7.32 -2.39 -0.02 2.69 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 44 H 0.03 1.38 7.57 -2.38 -0.02 1.36 16 45 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.11 2.10 7.32 -2.39 -0.02 2.08 16 48 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -91.74 395.93 1.28 -90.46 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.89 Total: 7.62 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 8.36 Total: -13.25 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -5.11 Total: -114.06 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -4.44 Total: -40.66 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.77 kcal Atomic # 16 Polarization: 24.43 SS G_CDS: -0.30 Total: 24.13 kcal Total: -91.74 1.28 -90.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339564599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.287 kcal (2) G-P(sol) polarization free energy of solvation -91.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds