Wall clock time and date at job start Wed Apr 1 2020 03:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 C 1.53000 * 109.47271 * 120.00057 * 2 1 3 5 5 H 1.09000 * 109.46725 * 180.73445 * 4 2 1 6 6 C 1.52995 * 109.47342 * 60.73390 * 4 2 1 7 7 S 1.81397 * 109.47066 * 300.73269 * 4 2 1 8 8 C 1.81398 * 101.92514 * 180.02562 * 7 4 2 9 9 O 1.42110 * 108.58197 * 294.48963 * 7 4 2 10 10 O 1.42106 * 108.57960 * 65.51273 * 7 4 2 11 11 N 1.46899 * 109.46796 * 239.99888 * 2 1 3 12 12 C 1.46904 * 110.99762 * 184.47310 * 11 2 1 13 13 C 1.38576 * 111.00063 * 60.52787 * 11 2 1 14 14 N 1.31219 * 126.47558 * 26.48903 * 13 11 2 15 15 N 1.28531 * 109.86087 * 179.83110 * 14 13 11 16 16 C 1.30297 * 110.05080 * 0.45142 * 15 14 13 17 17 C 1.50705 * 126.34624 * 179.69013 * 16 15 14 18 18 C 1.53000 * 109.47012 * 270.04646 * 17 16 15 19 19 C 1.50703 * 109.46396 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00808 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99744 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99625 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00211 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46967 * 60.00187 * 23 21 19 25 25 H 1.48500 * 109.46905 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46749 * 299.99934 * 23 21 19 27 27 N 1.36452 * 126.46972 * 206.81424 * 13 11 2 28 28 C 1.46499 * 127.13743 * 0.02562 * 27 13 11 29 29 H 1.09006 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47059 * 300.00050 * 1 2 3 31 31 H 1.08996 * 109.47546 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47407 * 54.09862 * 6 4 2 33 33 H 1.09000 * 109.47358 * 174.09936 * 6 4 2 34 34 H 1.09004 * 109.47066 * 294.10415 * 6 4 2 35 35 H 1.08999 * 109.47193 * 59.99528 * 8 7 4 36 36 H 1.08995 * 109.47513 * 180.02562 * 8 7 4 37 37 H 1.09007 * 109.46744 * 300.00122 * 8 7 4 38 38 H 1.09003 * 109.47234 * 66.16145 * 12 11 2 39 39 H 1.09002 * 109.47221 * 186.15838 * 12 11 2 40 40 H 1.09005 * 109.47368 * 306.16081 * 12 11 2 41 41 H 1.08997 * 109.46552 * 30.04790 * 17 16 15 42 42 H 1.08997 * 109.46872 * 150.04161 * 17 16 15 43 43 H 1.08995 * 109.46852 * 299.99635 * 18 17 16 44 44 H 1.08995 * 109.46846 * 60.00337 * 18 17 16 45 45 H 0.97008 * 119.99897 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47471 * 85.86448 * 28 27 13 47 47 H 1.09004 * 109.47082 * 205.86025 * 28 27 13 48 48 H 1.08996 * 109.47311 * 325.86516 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1300 -0.7098 1.2557 6 6 1.5452 -2.1690 1.2401 7 16 1.4176 0.1211 2.7303 8 6 2.1325 -0.8832 4.0610 9 8 1.9905 1.4204 2.7866 10 8 0.0037 -0.0159 2.7685 11 7 2.0196 -0.6925 -1.1994 12 6 3.4842 -0.8055 -1.1811 13 6 1.5850 -0.0573 -2.3518 14 7 1.2758 1.2121 -2.4736 15 7 0.9154 1.4598 -3.6822 16 6 0.9636 0.3701 -4.3949 17 6 0.6117 0.2414 -5.8547 18 6 -0.8746 -0.0941 -5.9933 19 6 -1.2265 -0.2222 -7.4530 20 1 -0.4661 -0.0791 -8.2065 21 6 -2.5191 -0.5231 -7.8267 22 7 -3.4450 -0.6977 -6.9092 23 14 -2.9553 -0.6826 -9.6361 24 1 -2.1439 -1.7658 -10.2472 25 1 -4.3979 -1.0080 -9.7706 26 1 -2.6709 0.5998 -10.3286 27 7 1.3918 -0.6351 -3.5728 28 6 1.5994 -2.0410 -3.9288 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8304 -2.6445 0.3016 33 1 1.9929 -2.7113 2.0729 34 1 0.4598 -2.1826 1.3391 35 1 3.2197 -0.8667 3.9847 36 1 1.8294 -0.4767 5.0259 37 1 1.7775 -1.9100 3.9720 38 1 3.7880 -1.4597 -0.3639 39 1 3.8283 -1.2226 -2.1276 40 1 3.9230 0.1821 -1.0383 41 1 0.8208 1.1825 -6.3631 42 1 1.2071 -0.5539 -6.3031 43 1 -1.0836 -1.0352 -5.4848 44 1 -1.4698 0.7013 -5.5449 45 1 -4.3544 -0.9098 -7.1720 46 1 0.7003 -2.6114 -3.6958 47 1 1.8124 -2.1181 -4.9950 48 1 2.4399 -2.4394 -3.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340019688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:55 Heat of formation + Delta-G solvation = 24.052537 kcal Electronic energy + Delta-G solvation = -29297.839162 eV Core-core repulsion = 25324.676376 eV Total energy + Delta-G solvation = -3973.162786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.67076 -39.00007 -37.33695 -36.36112 -34.88988 -34.43628 -33.49731 -31.63884 -30.81343 -29.46379 -28.54117 -27.40927 -25.79227 -25.28549 -24.99726 -22.35219 -21.79489 -20.12686 -19.76285 -18.93101 -17.62993 -17.07210 -16.57034 -16.49962 -16.14622 -16.08689 -15.66515 -15.45260 -14.96811 -14.51835 -14.25420 -13.71357 -13.67809 -13.55106 -13.50497 -13.18027 -13.07807 -12.91044 -12.77842 -12.64697 -12.42160 -12.29034 -12.22757 -12.12797 -11.70712 -11.49160 -11.42300 -11.30315 -11.18385 -11.05573 -10.97081 -10.73319 -10.58517 -10.41333 -10.02978 -9.87603 -9.73949 -9.25812 -9.17987 -8.41335 -8.15857 -6.05502 -4.10059 -0.43055 2.06698 2.33408 2.42705 3.21585 3.24010 3.30372 3.35756 3.37621 3.57613 3.68626 3.99700 4.13252 4.33290 4.40638 4.54676 4.63675 4.70285 4.80037 4.96553 5.02203 5.07127 5.11455 5.18469 5.23041 5.24272 5.30335 5.34237 5.42524 5.47145 5.55124 5.60071 5.81268 5.84818 5.96635 6.12275 6.32053 6.35408 6.43028 6.52776 6.65285 6.89634 7.38108 7.54811 7.68503 7.91483 8.28664 8.95808 9.14605 9.54516 11.05498 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.002396 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.931459 B =11683.225788 C =12039.545799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 H 0.080 0.920 4 C -0.573 4.573 5 H 0.137 0.863 6 C -0.140 4.140 7 S 2.420 3.580 8 C -0.656 4.656 9 O -0.936 6.936 10 O -0.925 6.925 11 N -0.445 5.445 12 C 0.021 3.979 13 C 0.324 3.676 14 N -0.315 5.315 15 N -0.295 5.295 16 C 0.215 3.785 17 C -0.031 4.031 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.891 5.891 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.275 1.275 27 N -0.472 5.472 28 C 0.083 3.917 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.014 0.986 44 H 0.026 0.974 45 H 0.263 0.737 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.612 -7.786 20.777 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.011 3.989 3 H 0.098 0.902 4 C -0.682 4.682 5 H 0.155 0.845 6 C -0.198 4.198 7 S 2.600 3.400 8 C -0.806 4.806 9 O -0.933 6.933 10 O -0.922 6.922 11 N -0.170 5.170 12 C -0.127 4.127 13 C -0.032 4.032 14 N -0.159 5.159 15 N -0.134 5.134 16 C -0.052 4.052 17 C -0.071 4.071 18 C -0.006 4.006 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.201 1.201 27 N -0.165 5.165 28 C -0.060 4.060 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.033 0.967 44 H 0.044 0.956 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.111 0.889 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.490 -6.130 21.251 27.002 hybrid contribution 0.814 -1.650 -1.298 2.252 sum 16.305 -7.780 19.953 26.917 Atomic orbital electron populations 1.22424 0.91998 1.04325 1.05155 1.21213 0.97236 0.95502 0.84936 0.90204 1.30359 1.11859 1.09743 1.16282 0.84456 1.21709 1.02856 0.90499 1.04751 1.08075 0.76661 0.76834 0.78388 1.30280 1.13964 1.16817 1.19501 1.93620 1.79878 1.34063 1.85702 1.93608 1.26554 1.86672 1.85372 1.58657 1.11333 1.49234 0.97801 1.22586 0.84892 1.01806 1.03367 1.22088 1.06192 0.89041 0.85867 1.74512 1.18735 1.09983 1.12692 1.74045 1.19403 1.22543 0.97394 1.25641 0.98770 0.83296 0.97471 1.20462 1.01652 1.02961 0.82014 1.19061 0.86921 0.97190 0.97405 1.21092 0.94845 1.48782 0.91678 0.92368 1.25014 0.96450 0.95194 0.97580 1.69964 1.02363 1.47734 1.32920 0.86614 0.77326 0.78642 0.85158 1.20234 1.21273 1.20078 1.46100 1.50717 1.10810 1.08914 1.21984 1.03266 0.77880 1.02876 0.90742 0.89455 0.90357 0.88957 0.91748 0.90041 0.85339 0.85134 0.84971 0.89682 0.91042 0.93738 0.89266 0.91238 0.96715 0.95601 0.92773 0.89896 0.88949 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.14 37.16 0.30 -2.21 16 2 C 0.12 1.40 1.58 -67.71 -0.11 1.29 16 3 H 0.08 1.06 7.86 -51.93 -0.41 0.65 16 4 C -0.57 -4.02 2.08 -26.73 -0.06 -4.07 16 5 H 0.14 0.54 6.52 -51.92 -0.34 0.20 16 6 C -0.14 -0.78 8.19 37.16 0.30 -0.48 16 7 S 2.42 19.31 4.54 -107.50 -0.49 18.82 16 8 C -0.66 -2.21 10.18 101.05 1.03 -1.18 16 9 O -0.94 -11.15 18.10 -57.83 -1.05 -12.19 16 10 O -0.93 -10.46 14.97 -57.83 -0.87 -11.32 16 11 N -0.45 -5.29 3.77 -174.75 -0.66 -5.95 16 12 C 0.02 0.18 8.83 60.07 0.53 0.71 16 13 C 0.32 5.26 5.82 -318.88 -1.86 3.41 16 14 N -0.31 -6.20 10.42 30.31 0.32 -5.88 16 15 N -0.29 -6.38 12.18 32.99 0.40 -5.98 16 16 C 0.22 4.23 7.32 -154.01 -1.13 3.10 16 17 C -0.03 -0.62 5.52 -27.88 -0.15 -0.78 16 18 C 0.03 0.82 4.96 -27.88 -0.14 0.68 16 19 C -0.53 -14.29 9.11 -34.44 -0.31 -14.61 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 23 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 N -0.47 -7.69 3.21 -121.46 -0.39 -8.08 16 28 C 0.08 0.99 11.09 59.85 0.66 1.65 16 29 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 30 H 0.09 1.18 5.26 -51.92 -0.27 0.91 16 31 H 0.08 1.35 6.51 -51.93 -0.34 1.01 16 32 H 0.09 0.57 7.30 -51.93 -0.38 0.20 16 33 H 0.06 0.15 6.88 -51.93 -0.36 -0.21 16 34 H 0.08 0.54 6.51 -51.93 -0.34 0.20 16 35 H 0.13 0.17 8.14 -51.92 -0.42 -0.26 16 36 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.13 0.20 7.03 -51.92 -0.36 -0.16 16 38 H 0.08 0.46 6.49 -51.93 -0.34 0.12 16 39 H 0.07 0.60 7.37 -51.93 -0.38 0.22 16 40 H 0.04 0.42 8.12 -51.93 -0.42 -0.01 16 41 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 42 H 0.07 1.23 7.20 -51.93 -0.37 0.85 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.03 7.14 -51.93 -0.37 0.66 16 48 H 0.08 0.72 7.46 -51.93 -0.39 0.33 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -38.29 388.74 -9.67 -47.95 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.49 Total: -2.69 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.02 Total: -10.90 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.41 Total: -51.64 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -1.91 Total: -23.52 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 19.31 SS G_CDS: -0.49 Total: 18.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.29 -9.67 -47.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.007 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds