Wall clock time and date at job start Wed Apr 1 2020 03:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 C 1.53000 * 109.47271 * 120.00057 * 2 1 3 5 5 H 1.09000 * 109.46725 * 180.73445 * 4 2 1 6 6 C 1.52995 * 109.47342 * 60.73390 * 4 2 1 7 7 S 1.81397 * 109.47066 * 300.73269 * 4 2 1 8 8 C 1.81398 * 101.92514 * 180.02562 * 7 4 2 9 9 O 1.42110 * 108.58197 * 294.48963 * 7 4 2 10 10 O 1.42106 * 108.57960 * 65.51273 * 7 4 2 11 11 N 1.46899 * 109.46796 * 239.99888 * 2 1 3 12 12 C 1.46904 * 110.99762 * 184.47310 * 11 2 1 13 13 C 1.38576 * 111.00063 * 60.52787 * 11 2 1 14 14 N 1.31219 * 126.47558 * 26.48903 * 13 11 2 15 15 N 1.28531 * 109.86087 * 179.83110 * 14 13 11 16 16 C 1.30297 * 110.05080 * 0.45142 * 15 14 13 17 17 C 1.50705 * 126.34624 * 179.69013 * 16 15 14 18 18 C 1.53000 * 109.47012 * 270.04646 * 17 16 15 19 19 C 1.50703 * 109.46396 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00808 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99744 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99625 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00211 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46967 * 60.00187 * 23 21 19 25 25 H 1.48500 * 109.46905 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46749 * 299.99934 * 23 21 19 27 27 N 1.36452 * 126.46972 * 206.81424 * 13 11 2 28 28 C 1.46499 * 127.13743 * 0.02562 * 27 13 11 29 29 H 1.09006 * 109.46865 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47059 * 300.00050 * 1 2 3 31 31 H 1.08996 * 109.47546 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47407 * 54.09862 * 6 4 2 33 33 H 1.09000 * 109.47358 * 174.09936 * 6 4 2 34 34 H 1.09004 * 109.47066 * 294.10415 * 6 4 2 35 35 H 1.08999 * 109.47193 * 59.99528 * 8 7 4 36 36 H 1.08995 * 109.47513 * 180.02562 * 8 7 4 37 37 H 1.09007 * 109.46744 * 300.00122 * 8 7 4 38 38 H 1.09003 * 109.47234 * 66.16145 * 12 11 2 39 39 H 1.09002 * 109.47221 * 186.15838 * 12 11 2 40 40 H 1.09005 * 109.47368 * 306.16081 * 12 11 2 41 41 H 1.08997 * 109.46552 * 30.04790 * 17 16 15 42 42 H 1.08997 * 109.46872 * 150.04161 * 17 16 15 43 43 H 1.08995 * 109.46852 * 299.99635 * 18 17 16 44 44 H 1.08995 * 109.46846 * 60.00337 * 18 17 16 45 45 H 0.97008 * 119.99897 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.47471 * 85.86448 * 28 27 13 47 47 H 1.09004 * 109.47082 * 205.86025 * 28 27 13 48 48 H 1.08996 * 109.47311 * 325.86516 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1300 -0.7098 1.2557 6 6 1.5452 -2.1690 1.2401 7 16 1.4176 0.1211 2.7303 8 6 2.1325 -0.8832 4.0610 9 8 1.9905 1.4204 2.7866 10 8 0.0037 -0.0159 2.7685 11 7 2.0196 -0.6925 -1.1994 12 6 3.4842 -0.8055 -1.1811 13 6 1.5850 -0.0573 -2.3518 14 7 1.2758 1.2121 -2.4736 15 7 0.9154 1.4598 -3.6822 16 6 0.9636 0.3701 -4.3949 17 6 0.6117 0.2414 -5.8547 18 6 -0.8746 -0.0941 -5.9933 19 6 -1.2265 -0.2222 -7.4530 20 1 -0.4661 -0.0791 -8.2065 21 6 -2.5191 -0.5231 -7.8267 22 7 -3.4450 -0.6977 -6.9092 23 14 -2.9553 -0.6826 -9.6361 24 1 -2.1439 -1.7658 -10.2472 25 1 -4.3979 -1.0080 -9.7706 26 1 -2.6709 0.5998 -10.3286 27 7 1.3918 -0.6351 -3.5728 28 6 1.5994 -2.0410 -3.9288 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8304 -2.6445 0.3016 33 1 1.9929 -2.7113 2.0729 34 1 0.4598 -2.1826 1.3391 35 1 3.2197 -0.8667 3.9847 36 1 1.8294 -0.4767 5.0259 37 1 1.7775 -1.9100 3.9720 38 1 3.7880 -1.4597 -0.3639 39 1 3.8283 -1.2226 -2.1276 40 1 3.9230 0.1821 -1.0383 41 1 0.8208 1.1825 -6.3631 42 1 1.2071 -0.5539 -6.3031 43 1 -1.0836 -1.0352 -5.4848 44 1 -1.4698 0.7013 -5.5449 45 1 -4.3544 -0.9098 -7.1720 46 1 0.7003 -2.6114 -3.6958 47 1 1.8124 -2.1181 -4.9950 48 1 2.4399 -2.4394 -3.3606 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340019688.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:54 Heat of formation + Delta-G solvation = -3.695511 kcal Electronic energy + Delta-G solvation = -29299.042408 eV Core-core repulsion = 25324.676376 eV Total energy + Delta-G solvation = -3974.366032 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.05287 -39.94122 -38.05926 -37.07665 -36.38376 -35.82566 -34.77730 -33.41047 -31.51074 -30.45620 -29.60085 -28.54207 -27.28286 -26.28097 -26.03722 -23.84415 -23.21173 -21.55956 -20.91849 -19.58501 -18.65208 -18.48123 -17.96340 -17.38764 -17.13431 -17.02547 -16.70851 -16.50138 -16.21213 -15.97280 -15.27450 -14.95099 -14.80371 -14.39125 -14.20591 -14.12780 -13.98280 -13.91468 -13.82639 -13.69221 -13.33941 -13.23386 -13.08115 -12.99315 -12.91792 -12.82556 -12.63895 -12.54157 -12.53402 -12.30915 -12.09116 -12.02103 -11.83225 -11.77183 -11.55109 -11.32704 -11.22490 -11.06592 -10.57083 -10.46494 -9.50641 -8.20448 -6.33351 -0.98886 0.72397 1.23260 1.42900 1.46597 1.54059 1.76001 1.81986 2.41703 2.49700 2.77365 3.05772 3.13748 3.30149 3.46179 3.55128 3.78623 3.87632 3.93402 4.04203 4.13204 4.17080 4.25499 4.29219 4.32048 4.40749 4.54296 4.60109 4.61771 4.66534 4.74564 4.81185 4.83028 4.84170 4.90437 4.92813 5.02977 5.03797 5.16717 5.42742 5.44240 5.51085 5.53659 5.59134 5.77784 6.13278 6.17691 6.82790 7.36908 7.70534 8.91528 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.002396 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.931459 B =11683.225788 C =12039.545799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.115 3.885 3 H 0.056 0.944 4 C -0.558 4.558 5 H 0.179 0.821 6 C -0.146 4.146 7 S 2.399 3.601 8 C -0.625 4.625 9 O -0.990 6.990 10 O -0.974 6.974 11 N -0.433 5.433 12 C 0.013 3.987 13 C 0.344 3.656 14 N -0.357 5.357 15 N -0.336 5.336 16 C 0.198 3.802 17 C -0.014 4.014 18 C 0.044 3.956 19 C -0.539 4.539 20 H 0.074 0.926 21 C 0.000 4.000 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.259 1.259 25 H -0.288 1.288 26 H -0.268 1.268 27 N -0.469 5.469 28 C 0.074 3.926 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.033 0.967 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.162 0.838 36 H 0.140 0.860 37 H 0.162 0.838 38 H 0.132 0.868 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.101 0.899 43 H -0.005 1.005 44 H -0.022 1.022 45 H 0.263 0.737 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.910 -11.226 21.605 31.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.006 3.994 3 H 0.074 0.926 4 C -0.668 4.668 5 H 0.197 0.803 6 C -0.204 4.204 7 S 2.587 3.413 8 C -0.779 4.779 9 O -0.987 6.987 10 O -0.971 6.971 11 N -0.159 5.159 12 C -0.133 4.133 13 C -0.013 4.013 14 N -0.201 5.201 15 N -0.175 5.175 16 C -0.071 4.071 17 C -0.053 4.053 18 C 0.005 3.995 19 C -0.577 4.577 20 H 0.092 0.908 21 C -0.198 4.198 22 N -0.576 5.576 23 Si 0.793 3.207 24 H -0.183 1.183 25 H -0.214 1.214 26 H -0.193 1.193 27 N -0.162 5.162 28 C -0.067 4.067 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.053 0.947 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.083 0.917 35 H 0.181 0.819 36 H 0.158 0.842 37 H 0.181 0.819 38 H 0.150 0.850 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.013 0.987 44 H -0.003 1.003 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 18.798 -9.550 22.049 30.508 hybrid contribution -0.172 -0.663 -1.378 1.539 sum 18.626 -10.213 20.672 29.640 Atomic orbital electron populations 1.22370 0.94418 1.04102 1.02798 1.21181 0.95479 0.95508 0.87188 0.92582 1.30274 1.14125 1.09841 1.12534 0.80348 1.21854 1.02305 0.89360 1.06837 1.08236 0.75969 0.77080 0.80043 1.30034 1.15595 1.16467 1.15842 1.93557 1.80210 1.38111 1.86793 1.93546 1.29769 1.87401 1.86341 1.58961 1.13571 1.47401 0.95987 1.22867 0.81963 1.02619 1.05862 1.22604 1.03467 0.88288 0.86935 1.74417 1.20998 1.12494 1.12160 1.73915 1.20512 1.24483 0.98578 1.25382 1.00103 0.84148 0.97489 1.20149 0.98348 1.03862 0.82989 1.18820 0.89930 0.94416 0.96302 1.21569 0.95449 1.48006 0.92705 0.90767 1.26028 0.96424 0.94733 1.02653 1.70129 1.02801 1.49088 1.35545 0.85437 0.76989 0.79254 0.78988 1.18294 1.21398 1.19315 1.46261 1.49796 1.11829 1.08319 1.22365 1.04678 0.75302 1.04360 0.89826 0.89811 0.94749 0.88925 0.86963 0.91733 0.81940 0.84202 0.81946 0.85010 0.90195 0.94452 0.89470 0.88094 0.98698 1.00344 0.92812 0.90254 0.87925 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.37 8.14 71.98 0.59 -4.79 16 2 C 0.12 2.69 1.58 44.92 0.07 2.76 16 3 H 0.06 1.58 7.86 -2.39 -0.02 1.56 16 4 C -0.56 -6.32 2.08 30.59 0.06 -6.25 16 5 H 0.18 0.49 6.52 -2.39 -0.02 0.47 16 6 C -0.15 -1.04 8.19 71.98 0.59 -0.45 16 7 S 2.40 35.79 4.54 -56.49 -0.26 35.53 16 8 C -0.63 -1.13 10.18 113.37 1.15 0.02 16 9 O -0.99 -24.18 18.10 -127.37 -2.31 -26.48 16 10 O -0.97 -22.78 14.97 -127.37 -1.91 -24.69 16 11 N -0.43 -9.73 3.77 -706.79 -2.67 -12.40 16 12 C 0.01 0.18 8.83 127.69 1.13 1.31 16 13 C 0.34 11.35 5.82 260.11 1.51 12.87 16 14 N -0.36 -14.94 10.42 -58.01 -0.60 -15.54 16 15 N -0.34 -15.49 12.18 -49.53 -0.60 -16.09 16 16 C 0.20 8.07 7.32 137.64 1.01 9.08 16 17 C -0.01 -0.57 5.52 29.85 0.16 -0.40 16 18 C 0.04 2.31 4.96 29.85 0.15 2.46 16 19 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 21 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 22 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 23 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 24 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 N -0.47 -15.31 3.21 -538.17 -1.73 -17.03 16 28 C 0.07 1.62 11.09 127.77 1.42 3.04 16 29 H 0.08 2.25 6.58 -2.38 -0.02 2.23 16 30 H 0.08 2.54 5.26 -2.38 -0.01 2.53 16 31 H 0.03 1.30 6.51 -2.39 -0.02 1.29 16 32 H 0.09 0.73 7.30 -2.39 -0.02 0.71 16 33 H 0.11 -0.24 6.88 -2.39 -0.02 -0.26 16 34 H 0.06 0.72 6.51 -2.39 -0.02 0.71 16 35 H 0.16 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.14 0.21 8.14 -2.39 -0.02 0.20 16 37 H 0.16 -0.57 7.03 -2.39 -0.02 -0.58 16 38 H 0.13 0.63 6.49 -2.39 -0.02 0.62 16 39 H 0.08 1.03 7.37 -2.39 -0.02 1.01 16 40 H 0.04 0.61 8.12 -2.38 -0.02 0.59 16 41 H 0.09 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.10 3.45 7.20 -2.39 -0.02 3.44 16 43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 44 H -0.02 -1.35 8.14 -2.39 -0.02 -1.37 16 45 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 46 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.10 2.05 7.14 -2.38 -0.02 2.04 16 48 H 0.12 1.68 7.46 -2.39 -0.02 1.66 16 Total: -1.00 -93.27 388.74 1.74 -91.53 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 0.96 Total: 6.30 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 8.54 Total: -9.40 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -5.32 Total: -118.24 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -4.21 Total: -51.17 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 35.79 SS G_CDS: -0.26 Total: 35.53 kcal Total: -93.27 1.74 -91.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340019688.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.832 kcal (2) G-P(sol) polarization free energy of solvation -93.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds