Wall clock time and date at job start Wed Apr 1 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46868 * 2 1 4 4 C 1.46899 * 110.99963 * 297.65500 * 3 2 1 5 5 C 1.52999 * 109.46777 * 288.01456 * 4 3 2 6 6 S 1.81401 * 109.47000 * 179.87842 * 5 4 3 7 7 C 1.81399 * 101.92366 * 180.02562 * 6 5 4 8 8 O 1.42106 * 108.57714 * 294.48917 * 6 5 4 9 9 O 1.42101 * 108.57874 * 65.51506 * 6 5 4 10 10 C 1.38579 * 111.00051 * 61.60936 * 3 2 1 11 11 N 1.31221 * 126.47463 * 254.83262 * 10 3 2 12 12 N 1.28519 * 109.86185 * 179.97438 * 11 10 3 13 13 C 1.30297 * 110.05508 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.34811 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47040 * 89.97853 * 14 13 12 16 16 C 1.50692 * 109.47082 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00588 * 0.02562 * 16 15 14 18 18 C 1.37889 * 120.00053 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99955 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99757 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47209 * 89.99714 * 20 18 16 22 22 H 1.48492 * 109.47392 * 209.99927 * 20 18 16 23 23 H 1.48510 * 109.47290 * 330.00058 * 20 18 16 24 24 N 1.36452 * 126.47643 * 74.52109 * 10 3 2 25 25 C 1.46513 * 127.13414 * 0.03231 * 24 10 3 26 26 C 1.53001 * 109.46586 * 87.41903 * 25 24 10 27 27 H 1.08995 * 109.47014 * 186.12583 * 1 2 3 28 28 H 1.09001 * 109.47233 * 306.12339 * 1 2 3 29 29 H 1.09001 * 109.46837 * 66.12485 * 1 2 3 30 30 H 1.08997 * 109.47085 * 239.99980 * 2 1 3 31 31 H 1.08997 * 109.47022 * 119.99746 * 2 1 3 32 32 H 1.09001 * 109.46763 * 168.02326 * 4 3 2 33 33 H 1.08998 * 109.47309 * 48.01678 * 4 3 2 34 34 H 1.09002 * 109.47058 * 59.88334 * 5 4 3 35 35 H 1.08997 * 109.47634 * 299.87952 * 5 4 3 36 36 H 1.09007 * 109.47451 * 59.99945 * 7 6 5 37 37 H 1.09001 * 109.47589 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46857 * 299.99661 * 7 6 5 39 39 H 1.08991 * 109.47400 * 209.97930 * 14 13 12 40 40 H 1.09003 * 109.47306 * 329.98254 * 14 13 12 41 41 H 1.09004 * 109.46835 * 300.00072 * 15 14 13 42 42 H 1.08994 * 109.46994 * 60.00043 * 15 14 13 43 43 H 0.97003 * 120.00020 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.46870 * 207.41858 * 25 24 10 45 45 H 1.08999 * 109.47174 * 327.42221 * 25 24 10 46 46 H 1.08994 * 109.47407 * 300.00093 * 26 25 24 47 47 H 1.08999 * 109.47104 * 60.00275 * 26 25 24 48 48 H 1.09003 * 109.46861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5950 2.0935 -1.2147 5 6 2.3844 1.5665 -2.4147 6 16 1.8575 2.4389 -3.9154 7 6 2.9016 1.6684 -5.1829 8 8 0.5022 2.1043 -4.1812 9 8 2.2240 3.8066 -3.7963 10 6 1.6052 2.0583 1.1381 11 7 0.6575 2.9632 1.2075 12 7 0.5376 3.3780 2.4180 13 6 1.3942 2.7671 3.1866 14 6 1.5692 2.9727 4.6692 15 6 0.6577 2.0069 5.4291 16 6 0.8322 2.2130 6.9116 17 1 1.5237 2.9585 7.2756 18 6 0.1082 1.4504 7.8036 19 7 0.2609 1.6298 9.0974 20 14 -1.0883 0.1614 7.1742 21 1 -0.3824 -1.1361 7.0203 22 1 -2.2035 0.0065 8.1424 23 1 -1.6301 0.5891 5.8593 24 7 2.1015 1.9013 2.3995 25 6 3.1721 0.9948 2.8222 26 6 4.5248 1.6897 2.6534 27 1 -0.3633 -1.0218 0.1097 28 1 -0.3634 0.6058 0.8301 29 1 -0.3633 0.4160 -0.9398 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7823 3.1608 -1.0971 33 1 0.5303 1.9273 -1.3789 34 1 2.1988 0.4988 -2.5311 35 1 3.4489 1.7347 -2.2516 36 1 2.7005 0.5976 -5.2178 37 1 2.6811 2.1116 -6.1541 38 1 3.9510 1.8333 -4.9386 39 1 2.6072 2.7835 4.9423 40 1 1.3069 3.9988 4.9272 41 1 -0.3804 2.1963 5.1560 42 1 0.9199 0.9809 5.1712 43 1 -0.2481 1.0931 9.7250 44 1 3.0292 0.7271 3.8691 45 1 3.1479 0.0934 2.2099 46 1 4.6676 1.9575 1.6066 47 1 4.5490 2.5911 3.2657 48 1 5.3214 1.0152 2.9675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340294580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:34 Heat of formation + Delta-G solvation = 16.011106 kcal Electronic energy + Delta-G solvation = -29037.688676 eV Core-core repulsion = 25064.177188 eV Total energy + Delta-G solvation = -3973.511489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.81415 -38.66693 -37.37752 -36.41496 -35.68145 -34.14046 -32.38100 -31.95308 -30.76781 -30.29038 -30.00124 -28.24184 -25.72292 -24.50811 -24.09021 -22.59924 -21.42481 -20.25014 -19.95790 -19.27234 -17.65780 -17.12917 -16.92774 -16.67309 -16.38315 -16.15668 -16.08714 -15.17277 -14.85308 -14.51833 -14.25987 -13.93987 -13.78444 -13.74126 -13.65703 -13.38270 -13.27188 -13.09483 -12.76427 -12.67317 -12.46924 -12.37758 -12.35250 -12.17794 -11.84441 -11.67805 -11.52082 -11.47766 -11.23107 -11.14816 -11.11179 -11.02720 -10.47483 -10.41900 -10.14323 -9.93759 -9.83791 -9.40948 -9.32700 -8.62377 -8.21797 -6.12766 -4.12225 -0.51825 1.95419 2.27224 2.33112 3.11025 3.15376 3.23494 3.33601 3.38946 3.53683 3.61357 4.07939 4.19238 4.27413 4.38103 4.47514 4.53904 4.57042 4.79088 4.82974 4.90468 4.91196 5.02363 5.08332 5.11418 5.15629 5.19792 5.21889 5.35164 5.44622 5.50872 5.56040 5.62769 5.73278 5.95222 6.00158 6.08898 6.18515 6.28194 6.40410 6.47232 6.75958 7.07821 7.23537 7.30056 7.66219 8.41461 8.90686 9.05101 9.48855 11.00106 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.002516 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.756737 B =11128.109350 C =11408.106660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 N -0.445 5.445 4 C 0.079 3.921 5 C -0.614 4.614 6 S 2.424 3.576 7 C -0.655 4.655 8 O -0.935 6.935 9 O -0.933 6.933 10 C 0.330 3.670 11 N -0.318 5.318 12 N -0.292 5.292 13 C 0.211 3.789 14 C -0.023 4.023 15 C -0.003 4.003 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.265 1.265 24 N -0.470 5.470 25 C 0.104 3.896 26 C -0.164 4.164 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.025 0.975 42 H 0.007 0.993 43 H 0.264 0.736 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.725 -6.841 -27.332 30.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.081 4.081 3 N -0.169 5.169 4 C -0.050 4.050 5 C -0.742 4.742 6 S 2.604 3.396 7 C -0.805 4.805 8 O -0.932 6.932 9 O -0.930 6.930 10 C -0.027 4.027 11 N -0.162 5.162 12 N -0.131 5.131 13 C -0.056 4.056 14 C -0.063 4.063 15 C -0.042 4.042 16 C -0.561 4.561 17 H 0.094 0.906 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.703 3.297 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.190 1.190 24 N -0.165 5.165 25 C -0.019 4.019 26 C -0.222 4.222 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.458 -5.340 -27.689 29.743 hybrid contribution 0.366 -2.467 0.235 2.505 sum 9.824 -7.807 -27.453 30.185 Atomic orbital electron populations 1.22462 0.96288 1.03154 1.03515 1.22412 0.94662 0.87346 1.03666 1.58836 1.57324 1.02457 0.98238 1.21651 0.98220 0.99501 0.85605 1.30514 1.12332 1.14574 1.16802 1.07796 0.76701 0.76698 0.78396 1.30274 1.16815 1.14491 1.18884 1.93623 1.30704 1.85109 1.83753 1.93632 1.84501 1.29357 1.85472 1.22178 0.95251 1.00363 0.84887 1.74564 1.14222 1.13499 1.13916 1.74034 1.19891 1.23033 0.96174 1.25606 0.92042 0.90513 0.97475 1.20240 1.01822 1.03469 0.80720 1.19542 0.95255 0.93247 0.96128 1.21006 1.25366 1.21540 0.88169 0.90570 1.24965 0.96441 0.96951 0.94721 1.69894 1.41817 1.40744 1.01217 0.86837 0.81443 0.82061 0.79357 1.20399 1.21137 1.18951 1.46301 1.30157 1.32956 1.07046 1.21915 0.85462 0.91715 1.02819 1.22096 0.95338 1.01741 1.03056 0.91297 0.91642 0.91443 0.89010 0.90079 0.87989 0.90519 0.84781 0.83913 0.85291 0.85121 0.85209 0.90585 0.88611 0.95653 0.97437 0.92575 0.87801 0.89195 0.91715 0.91613 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.11 9.29 37.16 0.35 -1.76 16 2 C 0.05 0.42 5.83 -3.82 -0.02 0.40 16 3 N -0.44 -4.97 4.70 -174.51 -0.82 -5.79 16 4 C 0.08 0.81 4.32 -3.83 -0.02 0.79 16 5 C -0.61 -3.17 5.85 37.16 0.22 -2.96 16 6 S 2.42 15.28 5.36 -107.50 -0.58 14.70 16 7 C -0.66 -1.41 10.62 101.05 1.07 -0.34 16 8 O -0.93 -9.60 18.10 -57.83 -1.05 -10.65 16 9 O -0.93 -9.99 18.10 -57.83 -1.05 -11.03 16 10 C 0.33 5.05 5.52 -318.87 -1.76 3.28 16 11 N -0.32 -5.94 11.11 30.31 0.34 -5.60 16 12 N -0.29 -6.03 12.18 32.99 0.40 -5.63 16 13 C 0.21 3.92 7.32 -154.02 -1.13 2.80 16 14 C -0.02 -0.44 5.33 -27.88 -0.15 -0.59 16 15 C 0.00 -0.07 4.02 -27.89 -0.11 -0.19 16 16 C -0.52 -14.24 9.66 -34.44 -0.33 -14.57 16 17 H 0.08 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 19 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 20 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 24 N -0.47 -7.21 2.81 -114.08 -0.32 -7.53 16 25 C 0.10 1.19 6.63 -4.03 -0.03 1.17 16 26 C -0.16 -1.59 10.24 37.16 0.38 -1.21 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.95 6.87 -51.93 -0.36 0.60 16 29 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 30 H 0.09 0.53 6.62 -51.93 -0.34 0.18 16 31 H 0.08 0.73 6.36 -51.93 -0.33 0.40 16 32 H 0.10 1.21 7.82 -51.93 -0.41 0.81 16 33 H 0.08 0.84 5.97 -51.93 -0.31 0.53 16 34 H 0.13 0.32 6.72 -51.92 -0.35 -0.03 16 35 H 0.14 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 37 H 0.13 0.26 8.14 -51.92 -0.42 -0.17 16 38 H 0.13 0.06 8.14 -51.92 -0.42 -0.37 16 39 H 0.08 1.31 7.86 -51.93 -0.41 0.91 16 40 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 42 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.10 1.26 7.75 -51.93 -0.40 0.86 16 45 H 0.09 0.84 6.29 -51.93 -0.33 0.51 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -39.25 397.77 -10.33 -49.58 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.73 Total: -3.36 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.63 Total: -11.26 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.37 Total: -50.72 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -2.09 Total: -21.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 15.28 SS G_CDS: -0.58 Total: 14.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.25 -10.33 -49.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340294580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.589 kcal (2) G-P(sol) polarization free energy of solvation -39.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds