Wall clock time and date at job start Wed Apr 1 2020 03:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.46868 * 2 1 4 4 C 1.46899 * 110.99963 * 297.65500 * 3 2 1 5 5 C 1.52999 * 109.46777 * 288.01456 * 4 3 2 6 6 S 1.81401 * 109.47000 * 179.87842 * 5 4 3 7 7 C 1.81399 * 101.92366 * 180.02562 * 6 5 4 8 8 O 1.42106 * 108.57714 * 294.48917 * 6 5 4 9 9 O 1.42101 * 108.57874 * 65.51506 * 6 5 4 10 10 C 1.38579 * 111.00051 * 61.60936 * 3 2 1 11 11 N 1.31221 * 126.47463 * 254.83262 * 10 3 2 12 12 N 1.28519 * 109.86185 * 179.97438 * 11 10 3 13 13 C 1.30297 * 110.05508 * 359.97438 * 12 11 10 14 14 C 1.50701 * 126.34811 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.47040 * 89.97853 * 14 13 12 16 16 C 1.50692 * 109.47082 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00588 * 0.02562 * 16 15 14 18 18 C 1.37889 * 120.00053 * 179.97438 * 16 15 14 19 19 N 1.31507 * 119.99955 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 119.99757 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47209 * 89.99714 * 20 18 16 22 22 H 1.48492 * 109.47392 * 209.99927 * 20 18 16 23 23 H 1.48510 * 109.47290 * 330.00058 * 20 18 16 24 24 N 1.36452 * 126.47643 * 74.52109 * 10 3 2 25 25 C 1.46513 * 127.13414 * 0.03231 * 24 10 3 26 26 C 1.53001 * 109.46586 * 87.41903 * 25 24 10 27 27 H 1.08995 * 109.47014 * 186.12583 * 1 2 3 28 28 H 1.09001 * 109.47233 * 306.12339 * 1 2 3 29 29 H 1.09001 * 109.46837 * 66.12485 * 1 2 3 30 30 H 1.08997 * 109.47085 * 239.99980 * 2 1 3 31 31 H 1.08997 * 109.47022 * 119.99746 * 2 1 3 32 32 H 1.09001 * 109.46763 * 168.02326 * 4 3 2 33 33 H 1.08998 * 109.47309 * 48.01678 * 4 3 2 34 34 H 1.09002 * 109.47058 * 59.88334 * 5 4 3 35 35 H 1.08997 * 109.47634 * 299.87952 * 5 4 3 36 36 H 1.09007 * 109.47451 * 59.99945 * 7 6 5 37 37 H 1.09001 * 109.47589 * 180.02562 * 7 6 5 38 38 H 1.09004 * 109.46857 * 299.99661 * 7 6 5 39 39 H 1.08991 * 109.47400 * 209.97930 * 14 13 12 40 40 H 1.09003 * 109.47306 * 329.98254 * 14 13 12 41 41 H 1.09004 * 109.46835 * 300.00072 * 15 14 13 42 42 H 1.08994 * 109.46994 * 60.00043 * 15 14 13 43 43 H 0.97003 * 120.00020 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.46870 * 207.41858 * 25 24 10 45 45 H 1.08999 * 109.47174 * 327.42221 * 25 24 10 46 46 H 1.08994 * 109.47407 * 300.00093 * 26 25 24 47 47 H 1.08999 * 109.47104 * 60.00275 * 26 25 24 48 48 H 1.09003 * 109.46861 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5950 2.0935 -1.2147 5 6 2.3844 1.5665 -2.4147 6 16 1.8575 2.4389 -3.9154 7 6 2.9016 1.6684 -5.1829 8 8 0.5022 2.1043 -4.1812 9 8 2.2240 3.8066 -3.7963 10 6 1.6052 2.0583 1.1381 11 7 0.6575 2.9632 1.2075 12 7 0.5376 3.3780 2.4180 13 6 1.3942 2.7671 3.1866 14 6 1.5692 2.9727 4.6692 15 6 0.6577 2.0069 5.4291 16 6 0.8322 2.2130 6.9116 17 1 1.5237 2.9585 7.2756 18 6 0.1082 1.4504 7.8036 19 7 0.2609 1.6298 9.0974 20 14 -1.0883 0.1614 7.1742 21 1 -0.3824 -1.1361 7.0203 22 1 -2.2035 0.0065 8.1424 23 1 -1.6301 0.5891 5.8593 24 7 2.1015 1.9013 2.3995 25 6 3.1721 0.9948 2.8222 26 6 4.5248 1.6897 2.6534 27 1 -0.3633 -1.0218 0.1097 28 1 -0.3634 0.6058 0.8301 29 1 -0.3633 0.4160 -0.9398 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.7823 3.1608 -1.0971 33 1 0.5303 1.9273 -1.3789 34 1 2.1988 0.4988 -2.5311 35 1 3.4489 1.7347 -2.2516 36 1 2.7005 0.5976 -5.2178 37 1 2.6811 2.1116 -6.1541 38 1 3.9510 1.8333 -4.9386 39 1 2.6072 2.7835 4.9423 40 1 1.3069 3.9988 4.9272 41 1 -0.3804 2.1963 5.1560 42 1 0.9199 0.9809 5.1712 43 1 -0.2481 1.0931 9.7250 44 1 3.0292 0.7271 3.8691 45 1 3.1479 0.0934 2.2099 46 1 4.6676 1.9575 1.6066 47 1 4.5490 2.5911 3.2657 48 1 5.3214 1.0152 2.9675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340294580.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:33 Heat of formation + Delta-G solvation = -13.260665 kcal Electronic energy + Delta-G solvation = -29038.957996 eV Core-core repulsion = 25064.177188 eV Total energy + Delta-G solvation = -3974.780808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.10060 -39.56821 -37.98968 -37.02226 -36.87608 -35.90880 -33.96066 -32.92795 -31.80009 -31.36243 -30.35226 -29.51559 -27.38134 -25.39347 -25.04171 -23.61485 -23.14188 -21.40090 -21.23390 -19.78387 -19.05205 -18.38234 -18.03068 -17.53719 -17.14350 -16.93340 -16.81467 -16.39709 -16.01834 -15.83469 -15.38836 -15.07848 -14.90374 -14.73622 -14.43572 -14.31363 -14.08586 -13.96893 -13.85638 -13.53377 -13.45012 -13.22241 -13.10894 -13.02212 -13.00571 -12.93964 -12.57750 -12.52353 -12.37185 -12.21114 -12.05999 -12.00223 -11.86298 -11.84829 -11.53682 -11.51331 -11.42878 -11.11370 -10.79660 -10.61365 -9.46681 -8.31816 -6.35751 -0.95373 0.71759 1.20305 1.29056 1.35250 1.45486 1.74882 1.89527 2.32115 2.48059 2.86979 3.03208 3.13374 3.40288 3.48348 3.63234 3.71094 3.81198 3.96638 4.03699 4.07163 4.16280 4.18122 4.26605 4.27528 4.33541 4.40795 4.44988 4.49989 4.62274 4.64791 4.72633 4.77570 4.83743 4.88306 4.90655 5.03632 5.11751 5.15790 5.19632 5.26381 5.38628 5.44262 5.52130 5.60698 6.14451 6.22796 6.71217 7.28711 7.70620 8.84170 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.002516 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.756737 B =11128.109350 C =11408.106660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.431 5.431 4 C 0.067 3.933 5 C -0.597 4.597 6 S 2.414 3.586 7 C -0.625 4.625 8 O -0.987 6.987 9 O -0.992 6.992 10 C 0.350 3.650 11 N -0.358 5.358 12 N -0.332 5.332 13 C 0.197 3.803 14 C -0.010 4.010 15 C 0.007 3.993 16 C -0.526 4.526 17 H 0.047 0.953 18 C 0.015 3.985 19 N -0.942 5.942 20 Si 0.940 3.060 21 H -0.258 1.258 22 H -0.283 1.283 23 H -0.265 1.265 24 N -0.465 5.465 25 C 0.093 3.907 26 C -0.157 4.157 27 H 0.087 0.913 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.175 0.825 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.006 0.994 42 H 0.021 0.979 43 H 0.268 0.732 44 H 0.098 0.902 45 H 0.120 0.880 46 H 0.066 0.934 47 H 0.047 0.953 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.099 -10.659 -30.317 34.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.155 5.155 4 C -0.061 4.061 5 C -0.726 4.726 6 S 2.601 3.399 7 C -0.779 4.779 8 O -0.984 6.984 9 O -0.989 6.989 10 C -0.007 4.007 11 N -0.202 5.202 12 N -0.171 5.171 13 C -0.072 4.072 14 C -0.049 4.049 15 C -0.032 4.032 16 C -0.564 4.564 17 H 0.065 0.935 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.764 3.236 21 H -0.182 1.182 22 H -0.209 1.209 23 H -0.189 1.189 24 N -0.159 5.159 25 C -0.027 4.027 26 C -0.215 4.215 27 H 0.106 0.894 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.159 0.841 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.179 0.821 37 H 0.154 0.846 38 H 0.176 0.824 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.025 0.975 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.138 0.862 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 11.822 -9.140 -30.669 34.116 hybrid contribution -0.267 -1.304 1.075 1.711 sum 11.556 -10.444 -29.594 33.443 Atomic orbital electron populations 1.22462 0.97882 1.03330 1.01688 1.22695 0.93285 0.85883 1.06501 1.59127 1.56386 1.03212 0.96798 1.21718 0.98686 0.98582 0.87162 1.30384 1.13049 1.16271 1.12903 1.07650 0.76483 0.76065 0.79710 1.30019 1.16449 1.15605 1.15860 1.93559 1.34603 1.85523 1.84756 1.93562 1.85116 1.33548 1.86699 1.22643 0.93336 0.98782 0.85981 1.74473 1.16552 1.15821 1.13353 1.73916 1.21283 1.24540 0.97332 1.25207 0.93000 0.91918 0.97093 1.19940 1.01948 1.01806 0.81245 1.19357 0.95030 0.94886 0.93883 1.21286 1.24323 1.20378 0.90452 0.93461 1.25812 0.98358 0.99335 0.94816 1.70025 1.43343 1.42324 1.02577 0.85815 0.79210 0.80033 0.78523 1.18225 1.20914 1.18941 1.46458 1.30372 1.32573 1.06518 1.22318 0.85066 0.92248 1.03112 1.22067 0.95000 1.01490 1.02926 0.89431 0.96113 0.91340 0.84097 0.89301 0.90737 0.91895 0.80775 0.80927 0.82095 0.84564 0.82416 0.88672 0.89768 0.97549 0.96102 0.92344 0.88403 0.86176 0.91481 0.93378 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.86 9.29 71.98 0.67 -3.19 16 2 C 0.04 0.60 5.83 86.30 0.50 1.10 16 3 N -0.43 -8.58 4.70 -706.02 -3.32 -11.90 16 4 C 0.07 1.30 4.32 86.30 0.37 1.67 16 5 C -0.60 -4.00 5.85 71.98 0.42 -3.58 16 6 S 2.41 27.07 5.36 -56.49 -0.30 26.76 16 7 C -0.63 0.24 10.62 113.37 1.20 1.45 16 8 O -0.99 -20.24 18.10 -127.37 -2.30 -22.54 16 9 O -0.99 -21.83 18.10 -127.37 -2.31 -24.14 16 10 C 0.35 10.53 5.52 260.11 1.44 11.96 16 11 N -0.36 -13.90 11.11 -58.00 -0.64 -14.55 16 12 N -0.33 -14.29 12.18 -49.54 -0.60 -14.89 16 13 C 0.20 7.46 7.32 137.64 1.01 8.47 16 14 C -0.01 -0.38 5.33 29.85 0.16 -0.22 16 15 C 0.01 0.33 4.02 29.85 0.12 0.45 16 16 C -0.53 -29.32 9.66 25.60 0.25 -29.07 16 17 H 0.05 2.83 7.99 -2.91 -0.02 2.81 16 18 C 0.01 0.84 5.47 84.66 0.46 1.31 16 19 N -0.94 -57.67 13.96 21.45 0.30 -57.37 16 20 Si 0.94 44.22 27.47 68.60 1.88 46.10 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 24 N -0.47 -13.85 2.81 -514.83 -1.45 -15.30 16 25 C 0.09 1.90 6.63 86.38 0.57 2.48 16 26 C -0.16 -2.61 10.24 71.98 0.74 -1.87 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.02 0.59 6.87 -2.39 -0.02 0.57 16 29 H 0.07 1.32 6.53 -2.39 -0.02 1.30 16 30 H 0.14 0.68 6.62 -2.39 -0.02 0.66 16 31 H 0.09 1.17 6.36 -2.39 -0.02 1.16 16 32 H 0.07 1.85 7.82 -2.39 -0.02 1.84 16 33 H 0.06 1.39 5.97 -2.39 -0.01 1.38 16 34 H 0.17 -0.25 6.72 -2.39 -0.02 -0.27 16 35 H 0.17 0.19 8.14 -2.39 -0.02 0.18 16 36 H 0.16 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.16 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.09 3.31 7.86 -2.39 -0.02 3.29 16 40 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 41 H 0.01 0.31 7.20 -2.39 -0.02 0.29 16 42 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.10 2.16 7.75 -2.39 -0.02 2.14 16 45 H 0.12 1.72 6.29 -2.39 -0.02 1.71 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -93.00 397.77 0.07 -92.93 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: 0.90 Total: 3.94 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 7.91 Total: -9.04 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -5.71 Total: -114.01 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -4.61 Total: -46.68 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.88 Total: 46.10 kcal Atomic # 16 Polarization: 27.07 SS G_CDS: -0.30 Total: 26.76 kcal Total: -93.00 0.07 -92.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340294580.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -92.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds