Wall clock time and date at job start Wed Apr 1 2020 03:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99919 * 2 1 4 4 C 1.53000 * 109.46895 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47107 * 65.00422 * 4 3 2 6 6 C 1.42898 * 114.00311 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47272 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46902 * 185.00367 * 7 6 5 9 9 C 1.53002 * 109.47071 * 305.00340 * 7 6 5 10 10 N 1.46495 * 109.46973 * 65.00227 * 7 6 5 11 11 C 1.34778 * 120.00325 * 155.00424 * 10 7 6 12 12 O 1.21351 * 119.99442 * 359.97438 * 11 10 7 13 13 C 1.49443 * 120.00326 * 179.97438 * 11 10 7 14 14 O 1.21351 * 120.00229 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99740 * 179.97438 * 13 11 10 16 16 C 1.47420 * 125.65180 * 0.04080 * 15 13 11 17 17 C 1.54907 * 104.83524 * 204.09058 * 16 15 13 18 18 C 1.55155 * 101.58383 * 322.99460 * 17 16 15 19 19 O 1.42906 * 110.71811 * 277.13691 * 18 17 16 20 20 C 1.50694 * 110.72532 * 153.86250 * 18 17 16 21 21 H 1.08003 * 119.99767 * 5.02378 * 20 18 17 22 22 C 1.37877 * 120.00240 * 185.02148 * 20 18 17 23 23 N 1.31510 * 120.00098 * 0.02562 * 22 20 18 24 24 Si 1.86808 * 119.99853 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46768 * 120.00186 * 24 22 20 27 27 H 1.48497 * 109.46703 * 240.00152 * 24 22 20 28 28 C 1.47026 * 125.64391 * 180.02562 * 15 13 11 29 29 H 1.08996 * 109.47471 * 59.99954 * 1 2 3 30 30 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47153 * 299.99690 * 1 2 3 32 32 H 1.08998 * 109.46771 * 60.00383 * 3 2 1 33 33 H 1.08993 * 109.47371 * 300.00355 * 3 2 1 34 34 H 1.09000 * 109.47574 * 305.00307 * 4 3 2 35 35 H 1.09002 * 109.46851 * 185.00156 * 4 3 2 36 36 H 1.09003 * 109.46826 * 60.00139 * 6 5 4 37 37 H 1.08995 * 109.46831 * 300.00148 * 6 5 4 38 38 H 1.09004 * 109.47010 * 180.02562 * 9 7 6 39 39 H 1.09008 * 109.46988 * 299.99558 * 9 7 6 40 40 H 1.08998 * 109.47458 * 59.99745 * 9 7 6 41 41 H 0.96998 * 120.00031 * 334.99450 * 10 7 6 42 42 H 1.08997 * 110.36858 * 322.93289 * 16 15 13 43 43 H 1.08997 * 110.36396 * 85.14276 * 16 15 13 44 44 H 1.09001 * 111.00336 * 81.06484 * 17 16 15 45 45 H 1.09000 * 111.00618 * 204.91301 * 17 16 15 46 46 H 0.96696 * 113.99731 * 174.96995 * 19 18 17 47 47 H 0.96996 * 120.00114 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.88351 * 298.39161 * 28 15 13 49 49 H 1.08998 * 109.88379 * 59.55951 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4197 -1.3221 7 6 5.7266 -0.2350 -2.6614 8 1 6.7968 -0.4378 -2.7021 9 6 4.9531 -1.5477 -2.8012 10 7 5.3585 0.6675 -3.7551 11 6 5.9850 0.5751 -4.9449 12 8 6.8542 -0.2555 -5.1100 13 6 5.6091 1.4954 -6.0607 14 8 4.7396 2.3256 -5.8958 15 7 6.2360 1.4032 -7.2503 16 6 7.3045 0.4448 -7.5866 17 6 8.0836 1.1108 -8.7481 18 6 6.9377 1.7935 -9.5407 19 8 6.3046 0.8605 -10.4187 20 6 7.4549 2.9832 -10.3076 21 1 8.5127 3.2012 -10.3172 22 6 6.5778 3.7933 -10.9971 23 7 5.2898 3.5282 -10.9851 24 14 7.2191 5.2676 -11.9483 25 1 8.6949 5.3466 -11.8030 26 1 6.8697 5.1204 -13.3841 27 1 6.6025 6.5081 -11.4134 28 6 5.9671 2.2417 -8.4277 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.7362 -0.2122 -0.5075 37 1 5.8631 1.3959 -1.2601 38 1 5.1988 -2.0144 -3.7552 39 1 5.2270 -2.2193 -1.9874 40 1 3.8829 -1.3450 -2.7604 41 1 4.6639 1.3315 -3.6230 42 1 7.9598 0.2911 -6.7292 43 1 6.8754 -0.5035 -7.9100 44 1 8.7915 1.8490 -8.3710 45 1 8.5895 0.3630 -9.3587 46 1 5.5331 1.2162 -10.8804 47 1 4.6727 4.0983 -11.4698 48 1 4.9371 2.1011 -8.7556 49 1 6.1409 3.2898 -8.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349224463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:00 Heat of formation + Delta-G solvation = -203.864711 kcal Electronic energy + Delta-G solvation = -30962.036074 eV Core-core repulsion = 26503.944432 eV Total energy + Delta-G solvation = -4458.091642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41320 -39.05446 -38.43169 -37.60422 -37.17027 -35.43392 -34.19330 -32.24070 -31.46819 -30.19196 -30.10530 -27.89289 -26.84484 -26.41455 -25.86191 -23.95964 -22.93219 -22.24864 -20.77798 -19.87121 -19.42742 -17.46719 -17.32093 -17.15425 -17.09279 -16.56292 -15.94290 -15.80105 -15.68846 -15.55802 -15.16778 -14.97643 -14.59211 -14.24872 -14.11670 -13.84510 -13.48443 -13.01662 -12.95453 -12.88599 -12.65360 -12.52250 -12.36378 -12.30425 -11.99365 -11.76283 -11.64650 -11.51777 -11.30844 -11.15906 -11.08048 -10.99546 -10.74736 -10.56804 -10.46568 -10.15715 -10.05048 -9.96673 -9.32191 -9.21344 -9.04715 -8.67174 -8.32661 -7.97879 -6.29441 -4.37844 1.82908 2.66978 3.20026 3.24413 3.28850 3.32624 3.41175 3.64333 3.94063 4.27028 4.47101 4.64829 4.74500 4.78470 4.80138 4.94126 4.98277 4.99164 5.02605 5.06508 5.11610 5.24575 5.34943 5.36951 5.37664 5.53085 5.61688 5.83530 5.85340 5.90688 6.07341 6.19762 6.27916 6.43578 6.54843 6.73024 6.77548 6.84087 6.85700 6.86965 7.21100 7.28033 7.38274 7.72121 7.92222 8.04676 8.07849 8.47918 8.66593 9.28928 9.37626 10.78438 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002201 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.412101 B =12720.747743 C =13523.579530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.374 6.374 6 C 0.053 3.947 7 C 0.147 3.853 8 H 0.103 0.897 9 C -0.160 4.160 10 N -0.699 5.699 11 C 0.512 3.488 12 O -0.520 6.520 13 C 0.506 3.494 14 O -0.538 6.538 15 N -0.576 5.576 16 C 0.099 3.901 17 C -0.121 4.121 18 C 0.247 3.753 19 O -0.583 6.583 20 C -0.535 4.535 21 H 0.068 0.932 22 C 0.069 3.931 23 N -0.894 5.894 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.101 3.899 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.382 0.618 47 H 0.270 0.730 48 H 0.071 0.929 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -5.611 22.602 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.293 6.293 6 C -0.024 4.024 7 C 0.042 3.958 8 H 0.121 0.879 9 C -0.218 4.218 10 N -0.353 5.353 11 C 0.294 3.706 12 O -0.395 6.395 13 C 0.288 3.712 14 O -0.417 6.417 15 N -0.308 5.308 16 C -0.023 4.023 17 C -0.159 4.159 18 C 0.206 3.794 19 O -0.391 6.391 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.134 4.134 23 N -0.533 5.533 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.020 4.020 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.232 0.768 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.738 -6.319 22.628 23.789 hybrid contribution -0.707 1.892 -0.394 2.058 sum -4.445 -4.427 22.234 23.102 Atomic orbital electron populations 1.22750 0.80993 1.02889 0.99944 1.87951 1.19652 1.27261 1.95393 1.22571 0.92314 0.85590 1.01066 1.22517 0.93462 0.97590 0.87670 1.87979 1.21385 1.81987 1.37978 1.22829 0.82396 1.00179 0.97009 1.21100 1.00653 0.90047 0.83963 0.87947 1.22079 1.01675 0.95726 1.02320 1.45798 1.40548 1.37821 1.11158 1.20415 0.81974 0.84360 0.83875 1.90689 1.30752 1.36267 1.81807 1.19588 0.83356 0.85154 0.83123 1.90724 1.31729 1.37371 1.81851 1.48705 1.35825 1.35176 1.11124 1.22629 0.88998 0.91961 0.98709 1.22818 0.97761 0.99839 0.95431 1.19531 0.87079 0.87027 0.85715 1.86133 1.48825 1.42629 1.61551 1.21544 0.94532 1.10031 1.31261 0.91360 1.25091 0.94817 0.97832 0.95634 1.69704 1.01842 1.39477 1.42307 0.86340 0.79209 0.81807 0.79510 1.19566 1.20733 1.20803 1.23216 1.01609 0.93940 0.83242 0.93838 0.89578 0.94259 0.91885 0.92081 0.92403 0.91645 0.91499 0.92384 0.92012 0.91730 0.91097 0.74810 0.89514 0.91422 0.90481 0.90351 0.76835 0.92042 0.91094 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -3.78 10.67 -40.08 -0.43 -4.21 16 3 C 0.06 0.47 6.32 37.16 0.23 0.70 16 4 C 0.06 0.48 6.32 37.16 0.23 0.71 16 5 O -0.37 -3.71 9.16 -40.08 -0.37 -4.08 16 6 C 0.05 0.45 5.68 37.16 0.21 0.66 16 7 C 0.15 1.58 2.98 -67.93 -0.20 1.38 16 8 H 0.10 1.10 7.58 -51.93 -0.39 0.71 16 9 C -0.16 -1.75 9.29 37.16 0.35 -1.40 16 10 N -0.70 -9.55 5.05 -54.24 -0.27 -9.82 16 11 C 0.51 8.74 7.82 -11.59 -0.09 8.64 16 12 O -0.52 -9.30 13.44 5.50 0.07 -9.23 16 13 C 0.51 10.31 7.91 -11.59 -0.09 10.22 16 14 O -0.54 -11.97 16.80 5.50 0.09 -11.88 16 15 N -0.58 -12.39 3.33 -171.03 -0.57 -12.96 16 16 C 0.10 1.95 6.05 -2.53 -0.02 1.93 16 17 C -0.12 -2.50 6.22 -24.58 -0.15 -2.65 16 18 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 19 O -0.58 -14.74 13.08 -35.23 -0.46 -15.20 16 20 C -0.54 -13.97 8.12 -34.44 -0.28 -14.25 16 21 H 0.07 1.76 7.78 -52.48 -0.41 1.35 16 22 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 23 N -0.89 -23.67 10.98 55.43 0.61 -23.06 16 24 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.10 2.45 5.24 -3.06 -0.02 2.43 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.07 0.85 7.56 -51.93 -0.39 0.45 16 41 H 0.42 5.63 7.85 -40.82 -0.32 5.31 16 42 H 0.09 1.59 6.16 -51.93 -0.32 1.27 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.08 1.53 8.04 -51.93 -0.42 1.11 16 45 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 46 H 0.38 9.79 7.47 45.56 0.34 10.13 16 47 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 48 H 0.07 1.85 7.92 -51.93 -0.41 1.44 16 49 H 0.07 1.88 7.81 -51.93 -0.41 1.48 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -30.74 404.79 -6.49 -37.22 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -7.36 Total: 14.39 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 1.12 Total: 17.36 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.23 Total: -45.84 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.09 Total: -44.59 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.74 -6.49 -37.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349224463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.642 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds