Wall clock time and date at job start Wed Apr 1 2020 03:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99919 * 2 1 4 4 C 1.53000 * 109.46895 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47107 * 65.00422 * 4 3 2 6 6 C 1.42898 * 114.00311 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47272 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46902 * 185.00367 * 7 6 5 9 9 C 1.53002 * 109.47071 * 305.00340 * 7 6 5 10 10 N 1.46495 * 109.46973 * 65.00227 * 7 6 5 11 11 C 1.34778 * 120.00325 * 155.00424 * 10 7 6 12 12 O 1.21351 * 119.99442 * 359.97438 * 11 10 7 13 13 C 1.49443 * 120.00326 * 179.97438 * 11 10 7 14 14 O 1.21351 * 120.00229 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99740 * 179.97438 * 13 11 10 16 16 C 1.47420 * 125.65180 * 0.04080 * 15 13 11 17 17 C 1.54907 * 104.83524 * 204.09058 * 16 15 13 18 18 C 1.55155 * 101.58383 * 322.99460 * 17 16 15 19 19 O 1.42906 * 110.71811 * 277.13691 * 18 17 16 20 20 C 1.50694 * 110.72532 * 153.86250 * 18 17 16 21 21 H 1.08003 * 119.99767 * 5.02378 * 20 18 17 22 22 C 1.37877 * 120.00240 * 185.02148 * 20 18 17 23 23 N 1.31510 * 120.00098 * 0.02562 * 22 20 18 24 24 Si 1.86808 * 119.99853 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46768 * 120.00186 * 24 22 20 27 27 H 1.48497 * 109.46703 * 240.00152 * 24 22 20 28 28 C 1.47026 * 125.64391 * 180.02562 * 15 13 11 29 29 H 1.08996 * 109.47471 * 59.99954 * 1 2 3 30 30 H 1.09000 * 109.47178 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47153 * 299.99690 * 1 2 3 32 32 H 1.08998 * 109.46771 * 60.00383 * 3 2 1 33 33 H 1.08993 * 109.47371 * 300.00355 * 3 2 1 34 34 H 1.09000 * 109.47574 * 305.00307 * 4 3 2 35 35 H 1.09002 * 109.46851 * 185.00156 * 4 3 2 36 36 H 1.09003 * 109.46826 * 60.00139 * 6 5 4 37 37 H 1.08995 * 109.46831 * 300.00148 * 6 5 4 38 38 H 1.09004 * 109.47010 * 180.02562 * 9 7 6 39 39 H 1.09008 * 109.46988 * 299.99558 * 9 7 6 40 40 H 1.08998 * 109.47458 * 59.99745 * 9 7 6 41 41 H 0.96998 * 120.00031 * 334.99450 * 10 7 6 42 42 H 1.08997 * 110.36858 * 322.93289 * 16 15 13 43 43 H 1.08997 * 110.36396 * 85.14276 * 16 15 13 44 44 H 1.09001 * 111.00336 * 81.06484 * 17 16 15 45 45 H 1.09000 * 111.00618 * 204.91301 * 17 16 15 46 46 H 0.96696 * 113.99731 * 174.96995 * 19 18 17 47 47 H 0.96996 * 120.00114 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.88351 * 298.39161 * 28 15 13 49 49 H 1.08998 * 109.88379 * 59.55951 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3822 0.4197 -1.3221 7 6 5.7266 -0.2350 -2.6614 8 1 6.7968 -0.4378 -2.7021 9 6 4.9531 -1.5477 -2.8012 10 7 5.3585 0.6675 -3.7551 11 6 5.9850 0.5751 -4.9449 12 8 6.8542 -0.2555 -5.1100 13 6 5.6091 1.4954 -6.0607 14 8 4.7396 2.3256 -5.8958 15 7 6.2360 1.4032 -7.2503 16 6 7.3045 0.4448 -7.5866 17 6 8.0836 1.1108 -8.7481 18 6 6.9377 1.7935 -9.5407 19 8 6.3046 0.8605 -10.4187 20 6 7.4549 2.9832 -10.3076 21 1 8.5127 3.2012 -10.3172 22 6 6.5778 3.7933 -10.9971 23 7 5.2898 3.5282 -10.9851 24 14 7.2191 5.2676 -11.9483 25 1 8.6949 5.3466 -11.8030 26 1 6.8697 5.1204 -13.3841 27 1 6.6025 6.5081 -11.4134 28 6 5.9671 2.2417 -8.4277 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 5.7362 -0.2122 -0.5075 37 1 5.8631 1.3959 -1.2601 38 1 5.1988 -2.0144 -3.7552 39 1 5.2270 -2.2193 -1.9874 40 1 3.8829 -1.3450 -2.7604 41 1 4.6639 1.3315 -3.6230 42 1 7.9598 0.2911 -6.7292 43 1 6.8754 -0.5035 -7.9100 44 1 8.7915 1.8490 -8.3710 45 1 8.5895 0.3630 -9.3587 46 1 5.5331 1.2162 -10.8804 47 1 4.6727 4.0983 -11.4698 48 1 4.9371 2.1011 -8.7556 49 1 6.1409 3.2898 -8.1839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349224463.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:59 Heat of formation + Delta-G solvation = -228.561085 kcal Electronic energy + Delta-G solvation = -30963.106989 eV Core-core repulsion = 26503.944432 eV Total energy + Delta-G solvation = -4459.162557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87483 -40.26793 -39.42370 -38.92035 -38.34551 -36.61557 -35.88241 -34.25092 -32.41904 -31.88609 -30.86542 -29.72788 -27.74756 -27.48756 -27.00473 -25.57540 -23.76832 -23.49378 -21.83255 -21.54017 -21.03203 -19.13336 -18.81151 -18.30295 -17.77551 -17.68562 -17.36948 -17.04642 -16.98822 -16.46412 -16.29350 -16.17497 -16.02591 -15.65650 -15.35114 -14.82750 -14.79768 -14.73515 -14.64485 -14.23388 -14.02435 -13.54673 -13.45426 -13.36170 -13.25347 -13.04167 -12.88402 -12.74189 -12.61509 -12.51798 -12.36289 -12.28036 -12.24108 -12.07024 -11.99128 -11.90390 -11.19429 -10.76296 -10.64689 -10.58331 -10.51466 -10.33672 -10.29328 -9.74511 -8.27236 -6.43024 0.32996 1.25882 1.41492 1.44503 1.55268 2.10902 2.36516 2.48422 2.67762 2.88149 2.99224 3.30955 3.74554 3.78859 4.02293 4.03941 4.13475 4.15125 4.23088 4.32352 4.35026 4.45250 4.47219 4.51768 4.57059 4.59836 4.60764 4.63475 4.71334 4.80259 4.81332 4.86705 4.93559 4.95790 5.08074 5.10871 5.27540 5.31080 5.37049 5.44519 5.72240 5.98004 6.06892 6.16268 6.29453 6.36689 6.61062 6.67636 6.91763 7.26144 7.34077 8.79372 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016890 B = 0.002201 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.412101 B =12720.747743 C =13523.579530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.056 3.944 4 C 0.060 3.940 5 O -0.400 6.400 6 C 0.057 3.943 7 C 0.142 3.858 8 H 0.110 0.890 9 C -0.153 4.153 10 N -0.682 5.682 11 C 0.521 3.479 12 O -0.527 6.527 13 C 0.500 3.500 14 O -0.562 6.562 15 N -0.584 5.584 16 C 0.109 3.891 17 C -0.114 4.114 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.555 4.555 21 H 0.069 0.931 22 C 0.026 3.974 23 N -0.915 5.915 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.282 1.282 28 C 0.118 3.882 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.057 0.943 41 H 0.416 0.584 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.376 0.624 47 H 0.271 0.729 48 H 0.042 0.958 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -5.768 24.541 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.021 4.021 4 C -0.016 4.016 5 O -0.320 6.320 6 C -0.019 4.019 7 C 0.039 3.961 8 H 0.127 0.873 9 C -0.211 4.211 10 N -0.336 5.336 11 C 0.301 3.699 12 O -0.404 6.404 13 C 0.283 3.717 14 O -0.442 6.442 15 N -0.317 5.317 16 C -0.013 4.013 17 C -0.152 4.152 18 C 0.193 3.807 19 O -0.395 6.395 20 C -0.593 4.593 21 H 0.087 0.913 22 C -0.175 4.175 23 N -0.554 5.554 24 Si 0.790 3.210 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.059 0.941 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.253 0.747 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.109 0.891 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.685 -6.496 24.613 25.597 hybrid contribution -1.120 1.932 -0.922 2.416 sum -3.805 -4.564 23.692 24.425 Atomic orbital electron populations 1.22877 0.79934 1.03555 1.00645 1.87903 1.21031 1.28633 1.95573 1.22738 0.92645 0.84976 1.01701 1.22697 0.93275 0.98636 0.86981 1.87947 1.22106 1.82518 1.39390 1.22842 0.82080 1.01097 0.95926 1.21406 1.01035 0.89607 0.84064 0.87256 1.22013 1.00823 0.96083 1.02225 1.45851 1.39423 1.37699 1.10591 1.19708 0.82491 0.83772 0.83931 1.90680 1.31387 1.36441 1.81920 1.20328 0.82548 0.85218 0.83569 1.90700 1.32643 1.38494 1.82383 1.48749 1.36669 1.35301 1.10945 1.22644 0.88477 0.91170 0.98971 1.22822 0.96845 1.00183 0.95313 1.19732 0.88139 0.87250 0.85626 1.86124 1.48629 1.42940 1.61764 1.21823 0.94680 1.10938 1.31878 0.91323 1.25822 0.95018 1.00217 0.96448 1.69803 1.02661 1.40250 1.42692 0.85396 0.78840 0.78584 0.78156 1.18924 1.20402 1.20818 1.22749 0.99981 0.93063 0.84629 0.94118 0.89039 0.92547 0.89509 0.93138 0.91453 0.89763 0.88912 0.91285 0.93921 0.89332 0.92380 0.74685 0.87565 0.91464 0.89519 0.89067 0.77494 0.92002 0.93944 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.72 10.67 -144.34 -1.54 -9.26 16 3 C 0.06 0.78 6.32 71.98 0.45 1.23 16 4 C 0.06 0.76 6.32 71.98 0.45 1.22 16 5 O -0.40 -7.19 9.16 -144.34 -1.32 -8.51 16 6 C 0.06 0.80 5.68 71.98 0.41 1.21 16 7 C 0.14 2.76 2.98 44.99 0.13 2.90 16 8 H 0.11 2.05 7.58 -2.39 -0.02 2.04 16 9 C -0.15 -3.11 9.29 71.98 0.67 -2.44 16 10 N -0.68 -17.82 5.05 -443.87 -2.24 -20.06 16 11 C 0.52 17.28 7.82 87.27 0.68 17.96 16 12 O -0.53 -18.06 13.44 -3.25 -0.04 -18.10 16 13 C 0.50 20.47 7.91 87.27 0.69 21.16 16 14 O -0.56 -25.48 16.80 -3.25 -0.05 -25.53 16 15 N -0.58 -25.32 3.33 -813.38 -2.71 -28.03 16 16 C 0.11 4.17 6.05 86.86 0.53 4.69 16 17 C -0.11 -4.61 6.22 31.98 0.20 -4.41 16 18 C 0.23 11.47 0.85 -10.35 -0.01 11.46 16 19 O -0.59 -30.13 13.08 -148.98 -1.95 -32.08 16 20 C -0.56 -29.13 8.12 25.60 0.21 -28.93 16 21 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 22 C 0.03 1.36 5.28 84.66 0.45 1.80 16 23 N -0.91 -49.41 10.98 21.45 0.24 -49.17 16 24 Si 0.96 41.85 29.54 68.60 2.03 43.87 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 28 C 0.12 5.91 5.24 86.73 0.45 6.36 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.09 1.36 8.14 -2.38 -0.02 1.35 16 40 H 0.06 1.33 7.56 -2.39 -0.02 1.31 16 41 H 0.42 10.94 7.85 -92.71 -0.73 10.21 16 42 H 0.11 3.69 6.16 -2.39 -0.01 3.67 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.09 3.32 8.04 -2.39 -0.02 3.30 16 45 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.38 19.89 7.47 -74.06 -0.55 19.34 16 47 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 48 H 0.04 2.32 7.92 -2.39 -0.02 2.30 16 49 H 0.05 2.54 7.81 -2.39 -0.02 2.53 16 Total: -1.00 -66.49 404.79 -1.34 -67.83 By element: Atomic # 1 Polarization: 43.55 SS G_CDS: -0.31 Total: 43.23 kcal Atomic # 6 Polarization: 29.24 SS G_CDS: 6.57 Total: 35.81 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -4.71 Total: -97.26 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -4.91 Total: -93.49 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.87 kcal Total: -66.49 -1.34 -67.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349224463.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.730 kcal (2) G-P(sol) polarization free energy of solvation -66.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds