Wall clock time and date at job start Wed Apr 1 2020 03:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99930 * 2 1 4 4 C 1.53001 * 109.47330 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46805 * 65.00353 * 4 3 2 6 6 C 1.42911 * 113.99894 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47039 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47254 * 185.00205 * 7 6 5 9 9 C 1.53000 * 109.47100 * 304.99907 * 7 6 5 10 10 N 1.46499 * 109.47593 * 64.99727 * 7 6 5 11 11 C 1.34775 * 120.00299 * 154.99620 * 10 7 6 12 12 O 1.21345 * 119.99864 * 0.02562 * 11 10 7 13 13 C 1.49447 * 120.00201 * 180.02562 * 11 10 7 14 14 O 1.21354 * 120.00068 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00201 * 179.97438 * 13 11 10 16 16 C 1.47014 * 125.64849 * 359.96105 * 15 13 11 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47246 * 90.00319 * 24 22 20 26 26 H 1.48500 * 109.47199 * 210.00072 * 24 22 20 27 27 H 1.48500 * 109.47318 * 330.00403 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 11 29 29 H 1.08990 * 109.47667 * 299.99806 * 1 2 3 30 30 H 1.09008 * 109.46976 * 60.00190 * 1 2 3 31 31 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47198 * 60.00113 * 3 2 1 33 33 H 1.08999 * 109.47268 * 300.00057 * 3 2 1 34 34 H 1.09000 * 109.47247 * 305.00051 * 4 3 2 35 35 H 1.09001 * 109.47363 * 185.00392 * 4 3 2 36 36 H 1.08998 * 109.46765 * 60.00093 * 6 5 4 37 37 H 1.08990 * 109.46874 * 299.99827 * 6 5 4 38 38 H 1.09003 * 109.47521 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47194 * 299.99826 * 9 7 6 40 40 H 1.09000 * 109.47533 * 60.00175 * 9 7 6 41 41 H 0.97005 * 119.99446 * 335.00472 * 10 7 6 42 42 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 43 43 H 1.09006 * 109.88750 * 61.67443 * 16 15 13 44 44 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 45 45 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 46 46 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 47 47 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 49 49 H 1.09002 * 110.45871 * 274.72392 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5794 -1.2202 6 6 5.3822 0.4188 -1.3216 7 6 5.7266 -0.2358 -2.6609 8 1 6.7966 -0.4393 -2.7013 9 6 4.9523 -1.5479 -2.8013 10 7 5.3595 0.6672 -3.7546 11 6 5.9864 0.5746 -4.9441 12 8 6.8546 -0.2569 -5.1093 13 6 5.6123 1.4961 -6.0596 14 8 4.7444 2.3280 -5.8943 15 7 6.2396 1.4040 -7.2489 16 6 7.3052 0.4481 -7.5838 17 6 7.7346 0.7317 -9.0387 18 6 7.2811 2.1996 -9.2549 19 8 8.2467 3.1159 -8.7349 20 6 7.0112 2.4734 -10.7121 21 1 7.1922 1.7045 -11.4485 22 6 6.5329 3.7054 -11.1050 23 7 6.3127 4.6418 -10.2082 24 14 6.1976 4.0445 -12.9111 25 1 4.7956 3.6749 -13.2322 26 1 6.4053 5.4881 -13.1906 27 1 7.1253 3.2401 -13.7463 28 6 5.9709 2.2451 -8.4295 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0903 36 1 5.7354 -0.2135 -0.5071 37 1 5.8637 1.3946 -1.2593 38 1 5.1980 -2.0146 -3.7552 39 1 5.2254 -2.2198 -1.9876 40 1 3.8822 -1.3445 -2.7609 41 1 4.6653 1.3317 -3.6225 42 1 8.1530 0.5882 -6.9132 43 1 6.9285 -0.5714 -7.5005 44 1 7.2205 0.0635 -9.7297 45 1 8.8155 0.6420 -9.1462 46 1 7.9644 4.0404 -8.7590 47 1 5.9766 5.5087 -10.4847 48 1 5.7502 3.2679 -8.1242 49 1 5.1431 1.8358 -9.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349224466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:09 Heat of formation + Delta-G solvation = -204.844510 kcal Electronic energy + Delta-G solvation = -30988.260348 eV Core-core repulsion = 26530.126218 eV Total energy + Delta-G solvation = -4458.134129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38068 -39.04303 -38.42276 -37.59395 -37.13049 -35.40228 -34.16744 -32.20441 -31.45257 -30.20994 -30.15233 -27.90039 -26.84033 -26.40943 -25.85351 -23.96634 -22.92378 -22.20716 -20.74725 -19.80618 -19.46117 -17.46251 -17.35661 -17.11364 -17.08682 -16.54012 -15.96578 -15.76811 -15.68611 -15.48123 -15.12287 -14.93538 -14.55726 -14.35199 -14.16680 -13.81876 -13.52506 -13.04929 -12.97208 -12.82230 -12.65056 -12.49890 -12.38563 -12.23844 -11.97525 -11.68884 -11.61866 -11.48457 -11.30730 -11.15116 -11.05074 -11.03062 -10.76019 -10.54525 -10.47327 -10.18970 -10.04753 -9.95528 -9.38830 -9.18324 -9.07931 -8.68512 -8.38840 -7.87157 -6.29301 -4.38181 1.85696 2.69351 3.20706 3.25485 3.28395 3.31582 3.41475 3.66698 3.95378 4.26617 4.48493 4.65868 4.76288 4.79438 4.81938 4.94831 4.98621 4.99012 5.03507 5.07492 5.12291 5.25745 5.35204 5.37228 5.38764 5.52045 5.62857 5.82328 5.85529 5.87256 6.08740 6.20949 6.30257 6.42131 6.53123 6.73590 6.74802 6.82085 6.86076 6.87207 7.18318 7.30183 7.36875 7.73332 7.93616 8.02379 8.10504 8.49762 8.65624 9.30382 9.40484 10.78318 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.002193 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.548203 B =12762.383969 C =13636.954265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.061 3.939 4 C 0.064 3.936 5 O -0.374 6.374 6 C 0.053 3.947 7 C 0.147 3.853 8 H 0.103 0.897 9 C -0.159 4.159 10 N -0.699 5.699 11 C 0.511 3.489 12 O -0.519 6.519 13 C 0.507 3.493 14 O -0.538 6.538 15 N -0.575 5.575 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.249 3.751 19 O -0.581 6.581 20 C -0.535 4.535 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.090 3.910 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.382 0.618 47 H 0.270 0.730 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 -7.690 20.884 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.293 6.293 6 C -0.024 4.024 7 C 0.042 3.958 8 H 0.120 0.880 9 C -0.217 4.217 10 N -0.354 5.354 11 C 0.293 3.707 12 O -0.395 6.395 13 C 0.289 3.711 14 O -0.417 6.417 15 N -0.307 5.307 16 C -0.010 4.010 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.390 6.390 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.031 4.031 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.233 0.767 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.930 -8.441 20.876 23.286 hybrid contribution -1.003 1.437 -0.658 1.872 sum -6.933 -7.004 20.218 22.492 Atomic orbital electron populations 1.22748 0.81014 1.02869 0.99943 1.87949 1.19634 1.27286 1.95393 1.22573 0.92326 0.85566 1.01067 1.22516 0.93442 0.97618 0.87673 1.87977 1.21412 1.81990 1.37968 1.22829 0.82369 1.00216 0.97004 1.21092 1.00657 0.90019 0.83993 0.87966 1.22075 1.01647 0.95758 1.02268 1.45786 1.40634 1.37802 1.11166 1.20409 0.81986 0.84412 0.83931 1.90715 1.30687 1.36231 1.81819 1.19598 0.83322 0.85085 0.83057 1.90723 1.32013 1.37199 1.81764 1.48643 1.35523 1.35222 1.11265 1.22133 0.89914 0.91632 0.97361 1.22717 1.01565 0.98034 0.93675 1.19634 0.83244 0.85373 0.90936 1.86116 1.45596 1.21286 1.86015 1.21476 1.44728 0.99197 0.91959 0.91376 1.25085 0.93793 0.95878 0.98508 1.69652 1.44922 1.05052 1.33736 0.86380 0.78688 0.77569 0.84131 1.20427 1.21009 1.19659 1.23501 1.01291 0.95025 0.83241 0.94255 0.93852 0.89594 0.91881 0.92082 0.92410 0.91622 0.91506 0.92348 0.92071 0.91746 0.91118 0.74827 0.91184 0.91759 0.90394 0.90522 0.76711 0.91956 0.89365 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.78 10.67 -40.08 -0.43 -4.21 16 3 C 0.06 0.47 6.32 37.16 0.23 0.71 16 4 C 0.06 0.48 6.32 37.16 0.23 0.72 16 5 O -0.37 -3.76 9.16 -40.08 -0.37 -4.13 16 6 C 0.05 0.46 5.68 37.15 0.21 0.67 16 7 C 0.15 1.62 2.98 -67.93 -0.20 1.42 16 8 H 0.10 1.14 7.58 -51.93 -0.39 0.74 16 9 C -0.16 -1.74 9.29 37.16 0.35 -1.40 16 10 N -0.70 -9.73 5.05 -54.24 -0.27 -10.00 16 11 C 0.51 8.87 7.82 -11.59 -0.09 8.78 16 12 O -0.52 -9.49 13.79 5.50 0.08 -9.41 16 13 C 0.51 10.44 7.91 -11.59 -0.09 10.35 16 14 O -0.54 -12.05 16.73 5.49 0.09 -11.96 16 15 N -0.57 -12.38 3.33 -171.02 -0.57 -12.94 16 16 C 0.11 2.20 5.49 -3.07 -0.02 2.19 16 17 C -0.12 -2.51 6.13 -24.90 -0.15 -2.67 16 18 C 0.25 6.06 0.87 -89.62 -0.08 5.98 16 19 O -0.58 -14.94 13.15 -35.23 -0.46 -15.40 16 20 C -0.54 -13.87 8.26 -34.44 -0.28 -14.16 16 21 H 0.07 1.73 7.78 -52.48 -0.41 1.32 16 22 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 23 N -0.89 -23.65 10.72 55.43 0.59 -23.06 16 24 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 C 0.09 2.17 5.51 -2.52 -0.01 2.15 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.04 0.29 8.14 -51.92 -0.42 -0.14 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.84 7.56 -51.93 -0.39 0.45 16 41 H 0.42 5.73 7.85 -40.82 -0.32 5.41 16 42 H 0.07 1.38 7.58 -51.93 -0.39 0.99 16 43 H 0.06 1.16 7.69 -51.93 -0.40 0.77 16 44 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 45 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 46 H 0.38 10.03 7.32 45.56 0.33 10.36 16 47 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 48 H 0.09 2.33 7.47 -51.93 -0.39 1.95 16 49 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 405.24 15.07 6.11 6.11 Total: -1.00 -30.72 405.24 -6.54 -37.26 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -7.40 Total: 14.71 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 1.11 Total: 17.80 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.25 Total: -46.01 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -1.09 Total: -45.11 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.72 -6.54 -37.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349224466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.580 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds