Wall clock time and date at job start Wed Apr 1 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 113.99930 * 2 1 4 4 C 1.53001 * 109.47330 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.46805 * 65.00353 * 4 3 2 6 6 C 1.42911 * 113.99894 * 180.02562 * 5 4 3 7 7 C 1.52994 * 109.47039 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.47254 * 185.00205 * 7 6 5 9 9 C 1.53000 * 109.47100 * 304.99907 * 7 6 5 10 10 N 1.46499 * 109.47593 * 64.99727 * 7 6 5 11 11 C 1.34775 * 120.00299 * 154.99620 * 10 7 6 12 12 O 1.21345 * 119.99864 * 0.02562 * 11 10 7 13 13 C 1.49447 * 120.00201 * 180.02562 * 11 10 7 14 14 O 1.21354 * 120.00068 * 0.02562 * 13 11 10 15 15 N 1.34775 * 120.00201 * 179.97438 * 13 11 10 16 16 C 1.47014 * 125.64849 * 359.96105 * 15 13 11 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47246 * 90.00319 * 24 22 20 26 26 H 1.48500 * 109.47199 * 210.00072 * 24 22 20 27 27 H 1.48500 * 109.47318 * 330.00403 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 11 29 29 H 1.08990 * 109.47667 * 299.99806 * 1 2 3 30 30 H 1.09008 * 109.46976 * 60.00190 * 1 2 3 31 31 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47198 * 60.00113 * 3 2 1 33 33 H 1.08999 * 109.47268 * 300.00057 * 3 2 1 34 34 H 1.09000 * 109.47247 * 305.00051 * 4 3 2 35 35 H 1.09001 * 109.47363 * 185.00392 * 4 3 2 36 36 H 1.08998 * 109.46765 * 60.00093 * 6 5 4 37 37 H 1.08990 * 109.46874 * 299.99827 * 6 5 4 38 38 H 1.09003 * 109.47521 * 180.02562 * 9 7 6 39 39 H 1.09002 * 109.47194 * 299.99826 * 9 7 6 40 40 H 1.09000 * 109.47533 * 60.00175 * 9 7 6 41 41 H 0.97005 * 119.99446 * 335.00472 * 10 7 6 42 42 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 43 43 H 1.09006 * 109.88750 * 61.67443 * 16 15 13 44 44 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 45 45 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 46 46 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 47 47 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 49 49 H 1.09002 * 110.45871 * 274.72392 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9657 0.5794 -1.2202 6 6 5.3822 0.4188 -1.3216 7 6 5.7266 -0.2358 -2.6609 8 1 6.7966 -0.4393 -2.7013 9 6 4.9523 -1.5479 -2.8013 10 7 5.3595 0.6672 -3.7546 11 6 5.9864 0.5746 -4.9441 12 8 6.8546 -0.2569 -5.1093 13 6 5.6123 1.4961 -6.0596 14 8 4.7444 2.3280 -5.8943 15 7 6.2396 1.4040 -7.2489 16 6 7.3052 0.4481 -7.5838 17 6 7.7346 0.7317 -9.0387 18 6 7.2811 2.1996 -9.2549 19 8 8.2467 3.1159 -8.7349 20 6 7.0112 2.4734 -10.7121 21 1 7.1922 1.7045 -11.4485 22 6 6.5329 3.7054 -11.1050 23 7 6.3127 4.6418 -10.2082 24 14 6.1976 4.0445 -12.9111 25 1 4.7956 3.6749 -13.2322 26 1 6.4053 5.4881 -13.1906 27 1 7.1253 3.2401 -13.7463 28 6 5.9709 2.2451 -8.4295 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1766 0.0903 36 1 5.7354 -0.2135 -0.5071 37 1 5.8637 1.3946 -1.2593 38 1 5.1980 -2.0146 -3.7552 39 1 5.2254 -2.2198 -1.9876 40 1 3.8822 -1.3445 -2.7609 41 1 4.6653 1.3317 -3.6225 42 1 8.1530 0.5882 -6.9132 43 1 6.9285 -0.5714 -7.5005 44 1 7.2205 0.0635 -9.7297 45 1 8.8155 0.6420 -9.1462 46 1 7.9644 4.0404 -8.7590 47 1 5.9766 5.5087 -10.4847 48 1 5.7502 3.2679 -8.1242 49 1 5.1431 1.8358 -9.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349224466.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:08 Heat of formation + Delta-G solvation = -229.449545 kcal Electronic energy + Delta-G solvation = -30989.327302 eV Core-core repulsion = 26530.126218 eV Total energy + Delta-G solvation = -4459.201084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84897 -40.25867 -39.41988 -38.88067 -38.34246 -36.58722 -35.87382 -34.20853 -32.41623 -31.95281 -30.86538 -29.71547 -27.73552 -27.48657 -27.00366 -25.57909 -23.71637 -23.49509 -21.80643 -21.54918 -20.99943 -19.17471 -18.77798 -18.29297 -17.76607 -17.68777 -17.26006 -17.06708 -16.98522 -16.46493 -16.25582 -16.21682 -16.01106 -15.70814 -15.42358 -14.86224 -14.72055 -14.68958 -14.65529 -14.21831 -13.96209 -13.49909 -13.43197 -13.29539 -13.25024 -13.04994 -12.84541 -12.75321 -12.62107 -12.52619 -12.34666 -12.27570 -12.23487 -12.10635 -12.00586 -11.90491 -11.24196 -10.74790 -10.64770 -10.59828 -10.53321 -10.37014 -10.28894 -9.64497 -8.25653 -6.41877 0.34735 1.27840 1.43780 1.45916 1.55591 2.12185 2.37399 2.49357 2.67506 2.88095 3.00486 3.32554 3.74089 3.78122 4.02042 4.06774 4.13386 4.14988 4.22863 4.32015 4.33020 4.45347 4.46540 4.51795 4.57213 4.59783 4.62889 4.65903 4.72719 4.79110 4.80861 4.86802 4.93588 4.96063 5.05566 5.14603 5.25549 5.33051 5.36762 5.42979 5.74753 5.99141 6.07189 6.15913 6.29060 6.37278 6.62254 6.68279 6.93277 7.28356 7.36015 8.80537 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017468 B = 0.002193 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.548203 B =12762.383969 C =13636.954265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.056 3.944 4 C 0.060 3.940 5 O -0.399 6.399 6 C 0.057 3.943 7 C 0.142 3.858 8 H 0.107 0.893 9 C -0.152 4.152 10 N -0.683 5.683 11 C 0.519 3.481 12 O -0.528 6.528 13 C 0.500 3.500 14 O -0.563 6.563 15 N -0.582 5.582 16 C 0.120 3.880 17 C -0.116 4.116 18 C 0.234 3.766 19 O -0.588 6.588 20 C -0.554 4.554 21 H 0.070 0.930 22 C 0.027 3.973 23 N -0.916 5.916 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.284 1.284 27 H -0.267 1.267 28 C 0.104 3.896 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.416 0.584 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.375 0.625 47 H 0.271 0.729 48 H 0.056 0.944 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 -8.737 22.088 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.016 4.016 5 O -0.319 6.319 6 C -0.019 4.019 7 C 0.039 3.961 8 H 0.125 0.875 9 C -0.210 4.210 10 N -0.337 5.337 11 C 0.299 3.701 12 O -0.405 6.405 13 C 0.283 3.717 14 O -0.443 6.443 15 N -0.314 5.314 16 C -0.002 4.002 17 C -0.153 4.153 18 C 0.193 3.807 19 O -0.396 6.396 20 C -0.592 4.592 21 H 0.089 0.911 22 C -0.174 4.174 23 N -0.555 5.555 24 Si 0.791 3.209 25 H -0.201 1.201 26 H -0.209 1.209 27 H -0.191 1.191 28 C -0.018 4.018 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.253 0.747 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.757 -9.514 22.122 24.760 hybrid contribution -1.114 1.773 -0.947 2.298 sum -6.871 -7.741 21.175 23.569 Atomic orbital electron populations 1.22879 0.79916 1.03567 1.00651 1.87901 1.21046 1.28599 1.95573 1.22731 0.92575 0.84991 1.01714 1.22699 0.93334 0.98609 0.86989 1.87946 1.22030 1.82505 1.39384 1.22833 0.82114 1.01025 0.95973 1.21392 1.00947 0.89727 0.84082 0.87533 1.22002 1.00816 0.95935 1.02256 1.45841 1.39509 1.37693 1.10618 1.19749 0.82465 0.83851 0.84044 1.90709 1.31332 1.36478 1.81987 1.20310 0.82615 0.85195 0.83537 1.90699 1.32992 1.38335 1.82269 1.48692 1.36234 1.35345 1.11146 1.22158 0.89408 0.92039 0.96593 1.22730 1.02347 0.95579 0.94674 1.19862 0.83365 0.87034 0.90429 1.86107 1.46211 1.21078 1.86186 1.21770 1.45002 0.99562 0.92886 0.91136 1.25822 0.93593 0.95777 1.02229 1.69760 1.45242 1.05248 1.35262 0.85428 0.78517 0.77273 0.79639 1.20137 1.20930 1.19095 1.23091 1.00946 0.93626 0.84184 0.92576 0.94088 0.89007 0.89513 0.93108 0.91447 0.89854 0.88903 0.91476 0.93810 0.89375 0.92273 0.74707 0.91115 0.89767 0.88933 0.89589 0.77506 0.91998 0.92581 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.70 10.67 -144.34 -1.54 -9.24 16 3 C 0.06 0.79 6.32 71.98 0.45 1.25 16 4 C 0.06 0.78 6.32 71.98 0.45 1.24 16 5 O -0.40 -7.32 9.16 -144.34 -1.32 -8.64 16 6 C 0.06 0.85 5.68 71.98 0.41 1.26 16 7 C 0.14 2.85 2.98 44.99 0.13 2.99 16 8 H 0.11 2.12 7.58 -2.39 -0.02 2.11 16 9 C -0.15 -3.08 9.29 71.98 0.67 -2.41 16 10 N -0.68 -18.32 5.05 -443.89 -2.24 -20.57 16 11 C 0.52 17.62 7.82 87.27 0.68 18.30 16 12 O -0.53 -18.61 13.79 -3.23 -0.04 -18.65 16 13 C 0.50 20.70 7.91 87.27 0.69 21.39 16 14 O -0.56 -25.70 16.73 -3.26 -0.05 -25.76 16 15 N -0.58 -25.21 3.33 -813.35 -2.71 -27.91 16 16 C 0.12 4.58 5.49 86.73 0.48 5.05 16 17 C -0.12 -4.64 6.13 31.78 0.19 -4.45 16 18 C 0.23 11.46 0.87 -10.14 -0.01 11.45 16 19 O -0.59 -30.66 13.15 -148.98 -1.96 -32.62 16 20 C -0.55 -28.77 8.26 25.60 0.21 -28.56 16 21 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 22 C 0.03 1.39 5.30 84.65 0.45 1.83 16 23 N -0.92 -49.33 10.72 21.44 0.23 -49.10 16 24 Si 0.97 41.51 29.54 68.60 2.03 43.54 16 25 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 28 C 0.10 5.10 5.51 86.86 0.48 5.58 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 41 H 0.42 11.21 7.85 -92.70 -0.73 10.48 16 42 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 43 H 0.08 2.90 7.69 -2.38 -0.02 2.88 16 44 H 0.09 3.42 8.03 -2.38 -0.02 3.40 16 45 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 46 H 0.38 20.32 7.32 -74.06 -0.54 19.78 16 47 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.06 3.09 7.47 -2.39 -0.02 3.07 16 49 H 0.06 2.85 8.03 -2.39 -0.02 2.84 16 Total: -1.00 -66.19 405.24 -1.37 -67.57 By element: Atomic # 1 Polarization: 45.20 SS G_CDS: -0.30 Total: 44.90 kcal Atomic # 6 Polarization: 29.95 SS G_CDS: 6.54 Total: 36.49 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.72 Total: -97.58 kcal Atomic # 8 Polarization: -90.00 SS G_CDS: -4.92 Total: -94.92 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -66.19 -1.37 -67.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349224466.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.884 kcal (2) G-P(sol) polarization free energy of solvation -66.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds