Wall clock time and date at job start Wed Apr 1 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.69848 * 2 1 4 4 C 1.53625 * 109.66247 * 120.59161 * 2 1 3 5 5 C 1.53044 * 109.23669 * 174.55149 * 4 2 1 6 6 F 1.39904 * 109.45570 * 178.48993 * 5 4 2 7 7 F 1.39901 * 109.46198 * 58.53289 * 5 4 2 8 8 C 1.53039 * 109.53658 * 298.50958 * 5 4 2 9 9 C 1.53186 * 109.31311 * 61.36907 * 8 5 4 10 10 N 1.46918 * 109.58597 * 239.64644 * 2 1 3 11 11 C 1.34780 * 120.63528 * 6.62653 * 10 2 1 12 12 O 1.21348 * 119.99714 * 5.14350 * 11 10 2 13 13 C 1.49448 * 120.00374 * 185.15141 * 11 10 2 14 14 O 1.21351 * 120.00026 * 85.60479 * 13 11 10 15 15 N 1.34775 * 120.00063 * 265.60546 * 13 11 10 16 16 C 1.46925 * 120.62638 * 354.91951 * 15 13 11 17 17 C 1.53194 * 108.77704 * 126.41723 * 16 15 13 18 18 C 1.53042 * 109.30976 * 54.63057 * 17 16 15 19 19 C 1.53040 * 109.53913 * 298.63531 * 18 17 16 20 20 H 1.08994 * 109.50022 * 301.41699 * 19 18 17 21 21 C 1.50705 * 109.49356 * 181.35142 * 19 18 17 22 22 H 1.07998 * 120.00425 * 0.06691 * 21 19 18 23 23 C 1.37879 * 119.99602 * 180.02562 * 21 19 18 24 24 N 1.31515 * 120.00369 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 119.99907 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47278 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47337 * 120.00220 * 25 23 21 28 28 H 1.48503 * 109.47047 * 239.99757 * 25 23 21 29 29 C 1.46926 * 120.63333 * 174.94652 * 15 13 11 30 30 H 1.09002 * 109.46653 * 173.77952 * 1 2 3 31 31 H 1.08995 * 109.47239 * 293.78235 * 1 2 3 32 32 H 1.09005 * 109.47349 * 53.77922 * 1 2 3 33 33 H 1.08993 * 109.63364 * 54.56183 * 4 2 1 34 34 H 1.08994 * 109.45603 * 294.43430 * 4 2 1 35 35 H 1.08997 * 109.49975 * 301.41142 * 8 5 4 36 36 H 1.09000 * 109.51868 * 181.33535 * 8 5 4 37 37 H 1.09003 * 109.58840 * 185.57140 * 9 8 5 38 38 H 1.09007 * 109.59138 * 65.14788 * 9 8 5 39 39 H 1.09002 * 109.59338 * 6.62861 * 16 15 13 40 40 H 1.09003 * 109.58984 * 246.20240 * 16 15 13 41 41 H 1.09005 * 109.49555 * 294.68641 * 17 16 15 42 42 H 1.08997 * 109.52866 * 174.59916 * 17 16 15 43 43 H 1.09009 * 109.45593 * 178.61803 * 18 17 16 44 44 H 1.08993 * 109.46267 * 58.66292 * 18 17 16 45 45 H 0.96993 * 120.00579 * 180.02562 * 24 23 21 46 46 H 1.08996 * 109.58625 * 113.79974 * 29 15 13 47 47 H 1.08998 * 109.58413 * 353.36558 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8497 1.1676 6 9 4.0501 -1.4891 2.3161 7 9 4.1300 0.4299 1.0796 8 6 3.9615 -1.6627 -0.0689 9 6 3.4657 -0.9419 -1.3263 10 7 2.0225 -0.6995 -1.1944 11 6 1.1675 -1.1061 -2.1536 12 8 -0.0082 -0.8144 -2.0817 13 6 1.6672 -1.9164 -3.3057 14 8 1.7592 -3.1222 -3.2048 15 7 2.0158 -1.3079 -4.4566 16 6 1.8062 0.1356 -4.6335 17 6 3.1317 0.7783 -5.0540 18 6 3.6686 0.0642 -6.2966 19 6 3.9283 -1.4079 -5.9687 20 1 4.6425 -1.4774 -5.1483 21 6 4.4882 -2.1025 -7.1833 22 1 4.6445 -1.5494 -8.0976 23 6 4.8017 -3.4440 -7.1269 24 7 4.6126 -4.1173 -6.0131 25 14 5.4950 -4.3052 -8.6326 26 1 5.6106 -3.3333 -9.7494 27 1 6.8368 -4.8557 -8.3140 28 1 4.5882 -5.4114 -9.0315 29 6 2.6119 -2.0754 -5.5586 30 1 -0.3633 -1.0217 -0.1114 31 1 -0.3633 0.4144 0.9404 32 1 -0.3634 0.6073 -0.8291 33 1 1.6097 -1.7336 1.2889 34 1 1.7688 -0.1776 2.1389 35 1 3.5062 -2.6514 -0.0128 36 1 5.0460 -1.7634 -0.1110 37 1 3.6533 -1.5636 -2.2018 38 1 3.9877 0.0091 -1.4323 39 1 1.4695 0.5738 -3.6939 40 1 1.0568 0.3041 -5.4069 41 1 3.8535 0.6882 -4.2422 42 1 2.9696 1.8319 -5.2815 43 1 4.5994 0.5356 -6.6125 44 1 2.9358 0.1335 -7.1004 45 1 4.8335 -5.0609 -5.9733 46 1 1.9282 -2.0872 -6.4074 47 1 2.8068 -3.0961 -5.2293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351460982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:50 Heat of formation + Delta-G solvation = -160.267710 kcal Electronic energy + Delta-G solvation = -32866.676995 eV Core-core repulsion = 28299.388345 eV Total energy + Delta-G solvation = -4567.288650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.19191 -47.17863 -40.99860 -38.98267 -37.18456 -36.82126 -33.57609 -33.15973 -32.28572 -31.91842 -29.96410 -28.07206 -26.07534 -25.15023 -24.84025 -23.41962 -22.21804 -21.94273 -20.94883 -19.45817 -18.52133 -17.55973 -17.45234 -16.94779 -16.64847 -16.60372 -16.30531 -15.98756 -15.15289 -15.10931 -14.66426 -14.22857 -14.05864 -13.86291 -13.74199 -13.65349 -13.53382 -13.33727 -13.14535 -12.87837 -12.79342 -12.75218 -12.62843 -12.48988 -12.23928 -12.05654 -12.01840 -11.70630 -11.41271 -11.11436 -11.01259 -10.79347 -10.63191 -10.53479 -10.43671 -10.35453 -10.04443 -9.26023 -9.23124 -8.99925 -8.77496 -8.54481 -8.00827 -6.11236 -4.19166 2.25226 2.29240 2.93714 3.24397 3.33828 3.36264 3.42287 3.57248 3.77917 4.03185 4.10572 4.33516 4.37074 4.46464 4.77288 4.85072 5.00106 5.12681 5.16348 5.20707 5.24817 5.26116 5.35240 5.43060 5.51445 5.55035 5.57445 5.70968 5.88595 5.92491 6.03025 6.04866 6.18684 6.38694 6.45676 6.51062 6.71018 6.82961 6.92351 7.00022 7.03429 7.46583 7.70867 7.81042 7.83800 7.97073 8.22958 8.41437 8.84958 9.47433 10.94661 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003557 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.171872 B = 7869.154688 C = 8540.189010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.172 4.172 5 C 0.290 3.710 6 F -0.200 7.200 7 F -0.198 7.198 8 C -0.174 4.174 9 C 0.108 3.892 10 N -0.601 5.601 11 C 0.523 3.477 12 O -0.511 6.511 13 C 0.503 3.497 14 O -0.511 6.511 15 N -0.586 5.586 16 C 0.107 3.893 17 C -0.132 4.132 18 C -0.112 4.112 19 C 0.042 3.958 20 H 0.030 0.970 21 C -0.520 4.520 22 H 0.060 0.940 23 C 0.064 3.936 24 N -0.883 5.883 25 Si 0.893 3.107 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.110 3.890 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.264 0.736 46 H 0.049 0.951 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 10.258 13.150 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.210 4.210 5 C 0.254 3.746 6 F -0.181 7.181 7 F -0.179 7.179 8 C -0.213 4.213 9 C -0.015 4.015 10 N -0.337 5.337 11 C 0.307 3.693 12 O -0.386 6.386 13 C 0.284 3.716 14 O -0.386 6.386 15 N -0.320 5.320 16 C -0.016 4.016 17 C -0.170 4.170 18 C -0.150 4.150 19 C 0.022 3.978 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.079 0.921 23 C -0.139 4.139 24 N -0.520 5.520 25 Si 0.721 3.279 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.209 1.209 29 C -0.010 4.010 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.411 9.579 13.313 16.984 hybrid contribution 0.612 -0.513 -0.564 0.978 sum -3.800 9.065 12.749 16.098 Atomic orbital electron populations 1.22216 0.91322 1.04467 1.01646 1.21391 0.96873 0.95400 0.81999 0.89408 1.23140 0.92011 1.05102 1.00791 1.21042 0.92178 0.77232 0.84135 1.93022 1.90054 1.81981 1.53004 1.93005 1.87281 1.41128 1.96456 1.22933 1.04877 1.00883 0.92594 1.21806 0.79396 1.01798 0.98507 1.48265 1.07506 1.57407 1.20536 1.20771 0.86450 0.78485 0.83574 1.90807 1.16461 1.54363 1.76957 1.20072 0.79300 0.88363 0.83907 1.90833 1.52528 1.12976 1.82265 1.48636 1.58932 1.09102 1.15341 1.21725 0.98242 0.80593 1.01061 1.21953 0.96228 0.98773 1.00082 1.21648 0.99786 0.98317 0.95210 1.18982 0.92270 0.89348 0.97153 0.95176 1.21105 1.42644 0.94478 0.97626 0.92137 1.25040 0.95210 0.97628 0.96043 1.69853 1.47391 1.09184 1.25584 0.86518 0.78755 0.79628 0.83024 1.19741 1.20964 1.20929 1.22509 0.94304 0.99114 0.85050 0.91113 0.93134 0.89724 0.88011 0.88098 0.87722 0.87586 0.87427 0.89384 0.91501 0.91155 0.92086 0.91839 0.92697 0.92955 0.92591 0.93286 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 7.62 37.16 0.28 -1.22 16 2 C 0.15 1.52 3.30 -67.38 -0.22 1.30 16 3 H 0.09 0.82 7.92 -51.93 -0.41 0.41 16 4 C -0.17 -1.58 4.94 -26.38 -0.13 -1.71 16 5 C 0.29 3.04 2.10 -26.69 -0.06 2.99 16 6 F -0.20 -2.32 17.06 2.25 0.04 -2.28 16 7 F -0.20 -2.21 16.10 2.25 0.04 -2.17 16 8 C -0.17 -1.89 5.62 -26.61 -0.15 -2.04 16 9 C 0.11 1.32 6.15 -3.71 -0.02 1.29 16 10 N -0.60 -7.77 2.97 -165.47 -0.49 -8.26 16 11 C 0.52 8.50 5.30 -11.58 -0.06 8.44 16 12 O -0.51 -8.78 12.63 5.50 0.07 -8.71 16 13 C 0.50 9.81 5.47 -11.59 -0.06 9.74 16 14 O -0.51 -11.86 16.53 5.50 0.09 -11.77 16 15 N -0.59 -11.13 2.97 -173.28 -0.51 -11.64 16 16 C 0.11 1.63 6.36 -3.71 -0.02 1.61 16 17 C -0.13 -1.93 6.08 -26.61 -0.16 -2.09 16 18 C -0.11 -2.03 5.11 -26.69 -0.14 -2.17 16 19 C 0.04 0.94 2.25 -91.65 -0.21 0.73 16 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 21 C -0.52 -13.23 8.56 -34.44 -0.29 -13.52 16 22 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 23 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 24 N -0.88 -24.22 11.40 55.43 0.63 -23.58 16 25 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C 0.11 2.48 5.39 -3.71 -0.02 2.46 16 30 H 0.07 0.91 6.88 -51.93 -0.36 0.55 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 1.03 6.61 -51.93 -0.34 0.69 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.11 1.61 6.31 -51.93 -0.33 1.28 16 38 H 0.09 0.94 7.92 -51.93 -0.41 0.53 16 39 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.12 3.28 5.16 -51.93 -0.27 3.02 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -29.43 370.93 -7.99 -37.42 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -7.06 Total: 2.66 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -1.36 Total: 7.39 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.37 Total: -43.49 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.16 Total: -20.48 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.07 Total: -4.45 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.43 -7.99 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351460982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.845 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds