Wall clock time and date at job start Wed Apr 1 2020 03:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.69848 * 2 1 4 4 C 1.53625 * 109.66247 * 120.59161 * 2 1 3 5 5 C 1.53044 * 109.23669 * 174.55149 * 4 2 1 6 6 F 1.39904 * 109.45570 * 178.48993 * 5 4 2 7 7 F 1.39901 * 109.46198 * 58.53289 * 5 4 2 8 8 C 1.53039 * 109.53658 * 298.50958 * 5 4 2 9 9 C 1.53186 * 109.31311 * 61.36907 * 8 5 4 10 10 N 1.46918 * 109.58597 * 239.64644 * 2 1 3 11 11 C 1.34780 * 120.63528 * 6.62653 * 10 2 1 12 12 O 1.21348 * 119.99714 * 5.14350 * 11 10 2 13 13 C 1.49448 * 120.00374 * 185.15141 * 11 10 2 14 14 O 1.21351 * 120.00026 * 85.60479 * 13 11 10 15 15 N 1.34775 * 120.00063 * 265.60546 * 13 11 10 16 16 C 1.46925 * 120.62638 * 354.91951 * 15 13 11 17 17 C 1.53194 * 108.77704 * 126.41723 * 16 15 13 18 18 C 1.53042 * 109.30976 * 54.63057 * 17 16 15 19 19 C 1.53040 * 109.53913 * 298.63531 * 18 17 16 20 20 H 1.08994 * 109.50022 * 301.41699 * 19 18 17 21 21 C 1.50705 * 109.49356 * 181.35142 * 19 18 17 22 22 H 1.07998 * 120.00425 * 0.06691 * 21 19 18 23 23 C 1.37879 * 119.99602 * 180.02562 * 21 19 18 24 24 N 1.31515 * 120.00369 * 359.97438 * 23 21 19 25 25 Si 1.86796 * 119.99907 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47278 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47337 * 120.00220 * 25 23 21 28 28 H 1.48503 * 109.47047 * 239.99757 * 25 23 21 29 29 C 1.46926 * 120.63333 * 174.94652 * 15 13 11 30 30 H 1.09002 * 109.46653 * 173.77952 * 1 2 3 31 31 H 1.08995 * 109.47239 * 293.78235 * 1 2 3 32 32 H 1.09005 * 109.47349 * 53.77922 * 1 2 3 33 33 H 1.08993 * 109.63364 * 54.56183 * 4 2 1 34 34 H 1.08994 * 109.45603 * 294.43430 * 4 2 1 35 35 H 1.08997 * 109.49975 * 301.41142 * 8 5 4 36 36 H 1.09000 * 109.51868 * 181.33535 * 8 5 4 37 37 H 1.09003 * 109.58840 * 185.57140 * 9 8 5 38 38 H 1.09007 * 109.59138 * 65.14788 * 9 8 5 39 39 H 1.09002 * 109.59338 * 6.62861 * 16 15 13 40 40 H 1.09003 * 109.58984 * 246.20240 * 16 15 13 41 41 H 1.09005 * 109.49555 * 294.68641 * 17 16 15 42 42 H 1.08997 * 109.52866 * 174.59916 * 17 16 15 43 43 H 1.09009 * 109.45593 * 178.61803 * 18 17 16 44 44 H 1.08993 * 109.46267 * 58.66292 * 18 17 16 45 45 H 0.96993 * 120.00579 * 180.02562 * 24 23 21 46 46 H 1.08996 * 109.58625 * 113.79974 * 29 15 13 47 47 H 1.08998 * 109.58413 * 353.36558 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0470 -0.7362 1.2453 5 6 3.5712 -0.8497 1.1676 6 9 4.0501 -1.4891 2.3161 7 9 4.1300 0.4299 1.0796 8 6 3.9615 -1.6627 -0.0689 9 6 3.4657 -0.9419 -1.3263 10 7 2.0225 -0.6995 -1.1944 11 6 1.1675 -1.1061 -2.1536 12 8 -0.0082 -0.8144 -2.0817 13 6 1.6672 -1.9164 -3.3057 14 8 1.7592 -3.1222 -3.2048 15 7 2.0158 -1.3079 -4.4566 16 6 1.8062 0.1356 -4.6335 17 6 3.1317 0.7783 -5.0540 18 6 3.6686 0.0642 -6.2966 19 6 3.9283 -1.4079 -5.9687 20 1 4.6425 -1.4774 -5.1483 21 6 4.4882 -2.1025 -7.1833 22 1 4.6445 -1.5494 -8.0976 23 6 4.8017 -3.4440 -7.1269 24 7 4.6126 -4.1173 -6.0131 25 14 5.4950 -4.3052 -8.6326 26 1 5.6106 -3.3333 -9.7494 27 1 6.8368 -4.8557 -8.3140 28 1 4.5882 -5.4114 -9.0315 29 6 2.6119 -2.0754 -5.5586 30 1 -0.3633 -1.0217 -0.1114 31 1 -0.3633 0.4144 0.9404 32 1 -0.3634 0.6073 -0.8291 33 1 1.6097 -1.7336 1.2889 34 1 1.7688 -0.1776 2.1389 35 1 3.5062 -2.6514 -0.0128 36 1 5.0460 -1.7634 -0.1110 37 1 3.6533 -1.5636 -2.2018 38 1 3.9877 0.0091 -1.4323 39 1 1.4695 0.5738 -3.6939 40 1 1.0568 0.3041 -5.4069 41 1 3.8535 0.6882 -4.2422 42 1 2.9696 1.8319 -5.2815 43 1 4.5994 0.5356 -6.6125 44 1 2.9358 0.1335 -7.1004 45 1 4.8335 -5.0609 -5.9733 46 1 1.9282 -2.0872 -6.4074 47 1 2.8068 -3.0961 -5.2293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351460982.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:49 Heat of formation + Delta-G solvation = -177.211587 kcal Electronic energy + Delta-G solvation = -32867.411737 eV Core-core repulsion = 28299.388345 eV Total energy + Delta-G solvation = -4568.023391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.05498 -48.04531 -42.29065 -40.38382 -38.51672 -38.21330 -35.34706 -34.17150 -33.50896 -33.26182 -31.63950 -29.00768 -27.60839 -26.83697 -25.89990 -24.66663 -23.54832 -23.17615 -22.03899 -20.93244 -19.80924 -18.93004 -18.39177 -18.22799 -18.00052 -17.75451 -17.52353 -17.21260 -16.54547 -16.40303 -16.22268 -15.69815 -15.26702 -15.15172 -14.88836 -14.80541 -14.60017 -14.43939 -14.40000 -14.23695 -14.05690 -13.90665 -13.75241 -13.63771 -13.50932 -13.38289 -12.91622 -12.91413 -12.71610 -12.57027 -12.32545 -12.31581 -12.23622 -12.04126 -11.82435 -11.66254 -11.56954 -11.05528 -10.94304 -10.53164 -10.19090 -10.03475 -9.62774 -8.11740 -6.26404 0.95270 0.98112 1.41041 1.44483 1.49047 1.54562 2.17825 2.43360 2.64099 2.91198 3.05130 3.17720 3.19060 3.28721 3.53467 3.87260 3.92219 3.96037 4.08468 4.16741 4.26387 4.29064 4.34327 4.44819 4.53741 4.57135 4.67046 4.68039 4.74906 4.76437 4.79463 4.83152 5.06465 5.07587 5.10983 5.19035 5.24027 5.32086 5.42690 5.47863 5.60364 5.81456 5.87915 5.95598 6.30068 6.33903 6.59344 6.80903 6.89475 7.43822 8.92234 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.003557 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.171872 B = 7869.154688 C = 8540.189010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 H 0.112 0.888 4 C -0.166 4.166 5 C 0.294 3.706 6 F -0.205 7.205 7 F -0.198 7.198 8 C -0.174 4.174 9 C 0.109 3.891 10 N -0.590 5.590 11 C 0.533 3.467 12 O -0.521 6.521 13 C 0.495 3.505 14 O -0.561 6.561 15 N -0.586 5.586 16 C 0.103 3.897 17 C -0.122 4.122 18 C -0.106 4.106 19 C 0.042 3.958 20 H 0.001 0.999 21 C -0.532 4.532 22 H 0.062 0.938 23 C 0.015 3.985 24 N -0.913 5.913 25 Si 0.952 3.048 26 H -0.262 1.262 27 H -0.283 1.283 28 H -0.286 1.286 29 C 0.123 3.877 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.260 0.740 46 H 0.039 0.961 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.988 13.143 14.137 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.130 0.870 4 C -0.205 4.205 5 C 0.258 3.742 6 F -0.186 7.186 7 F -0.179 7.179 8 C -0.212 4.212 9 C -0.014 4.014 10 N -0.325 5.325 11 C 0.316 3.684 12 O -0.398 6.398 13 C 0.278 3.722 14 O -0.440 6.440 15 N -0.319 5.319 16 C -0.019 4.019 17 C -0.159 4.159 18 C -0.144 4.144 19 C 0.023 3.977 20 H 0.019 0.981 21 C -0.571 4.571 22 H 0.080 0.920 23 C -0.185 4.185 24 N -0.552 5.552 25 Si 0.778 3.222 26 H -0.186 1.186 27 H -0.209 1.209 28 H -0.212 1.212 29 C 0.002 3.998 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.529 12.526 14.316 19.554 hybrid contribution 0.671 -1.400 -0.845 1.768 sum -3.858 11.126 13.470 17.892 Atomic orbital electron populations 1.22105 0.91331 1.02863 1.02822 1.21679 0.96855 0.96272 0.80900 0.87041 1.23139 0.90721 1.05433 1.01198 1.21016 0.92902 0.76870 0.83386 1.93015 1.90218 1.82155 1.53203 1.93006 1.87423 1.41063 1.96423 1.22904 1.05425 1.00487 0.92429 1.21825 0.79174 1.02462 0.97937 1.48279 1.07347 1.56386 1.20442 1.20032 0.86480 0.78612 0.83325 1.90826 1.16683 1.55096 1.77161 1.20793 0.78342 0.88198 0.84871 1.90794 1.54627 1.15359 1.83216 1.48622 1.58152 1.10655 1.14422 1.22018 0.99206 0.78013 1.02619 1.21901 0.95433 1.00391 0.98221 1.21536 1.00397 0.95301 0.97164 1.18903 0.91236 0.92457 0.95135 0.98080 1.21527 1.42148 0.94797 0.98588 0.91966 1.25786 0.95762 0.98556 0.98369 1.70026 1.48646 1.09069 1.27477 0.85591 0.77826 0.78525 0.80248 1.18593 1.20852 1.21238 1.21961 0.94493 0.97738 0.85653 0.93558 0.89912 0.91051 0.88219 0.85259 0.88591 0.86684 0.90666 0.87085 0.89447 0.89967 0.91842 0.87709 0.92241 0.92647 0.93083 0.94218 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 7.62 71.98 0.55 -2.00 16 2 C 0.14 2.57 3.30 45.12 0.15 2.72 16 3 H 0.11 1.59 7.92 -2.38 -0.02 1.57 16 4 C -0.17 -2.57 4.94 30.82 0.15 -2.42 16 5 C 0.29 5.49 2.10 30.62 0.06 5.55 16 6 F -0.20 -4.34 17.06 44.97 0.77 -3.57 16 7 F -0.20 -3.81 16.10 44.97 0.72 -3.08 16 8 C -0.17 -3.63 5.62 30.67 0.17 -3.45 16 9 C 0.11 2.57 6.15 86.36 0.53 3.10 16 10 N -0.59 -14.45 2.97 -795.78 -2.36 -16.81 16 11 C 0.53 17.13 5.30 87.27 0.46 17.60 16 12 O -0.52 -17.56 12.63 -3.24 -0.04 -17.60 16 13 C 0.50 20.00 5.47 87.27 0.48 20.48 16 14 O -0.56 -27.80 16.53 -3.25 -0.05 -27.85 16 15 N -0.59 -22.67 2.97 -820.48 -2.44 -25.10 16 16 C 0.10 2.96 6.36 86.36 0.55 3.50 16 17 C -0.12 -3.22 6.08 30.67 0.19 -3.03 16 18 C -0.11 -3.72 5.11 30.62 0.16 -3.57 16 19 C 0.04 1.94 2.25 -11.46 -0.03 1.91 16 20 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 21 C -0.53 -27.61 8.56 25.60 0.22 -27.39 16 22 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 23 C 0.01 0.80 5.30 84.66 0.45 1.25 16 24 N -0.91 -52.54 11.40 21.45 0.24 -52.30 16 25 Si 0.95 42.63 29.54 68.60 2.03 44.66 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 29 C 0.12 5.80 5.39 86.36 0.47 6.27 16 30 H 0.05 1.12 6.88 -2.39 -0.02 1.10 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.58 6.61 -2.38 -0.02 1.56 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.07 2.34 6.31 -2.39 -0.02 2.32 16 38 H 0.11 2.14 7.92 -2.38 -0.02 2.12 16 39 H 0.09 2.19 6.30 -2.39 -0.02 2.17 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.08 4.64 5.16 -2.39 -0.01 4.63 16 Total: -1.00 -67.71 370.93 4.41 -63.30 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.98 Total: 17.82 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 4.56 Total: 20.54 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -4.55 Total: -94.22 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -0.09 Total: -45.45 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 1.49 Total: -6.65 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -67.71 4.41 -63.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351460982.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.909 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds