Wall clock time and date at job start Wed Apr 1 2020 03:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.58612 * 2 1 4 4 C 1.53192 * 109.58734 * 239.57649 * 2 1 3 5 5 C 1.53045 * 109.31074 * 185.57384 * 4 2 1 6 6 F 1.39901 * 109.45537 * 181.38080 * 5 4 2 7 7 F 1.39898 * 109.46253 * 301.35600 * 5 4 2 8 8 C 1.53044 * 109.53907 * 61.36553 * 5 4 2 9 9 C 1.53627 * 109.23768 * 298.50814 * 8 5 4 10 10 N 1.46921 * 109.59086 * 120.27864 * 2 1 3 11 11 C 1.34772 * 120.63165 * 353.38004 * 10 2 1 12 12 O 1.21354 * 119.99880 * 7.25395 * 11 10 2 13 13 C 1.49449 * 120.00317 * 187.25674 * 11 10 2 14 14 O 1.21350 * 119.99761 * 7.63826 * 13 11 10 15 15 N 1.34776 * 120.00166 * 187.64149 * 13 11 10 16 16 C 1.46923 * 120.63158 * 0.53986 * 15 13 11 17 17 C 1.53194 * 108.77814 * 126.41006 * 16 15 13 18 18 C 1.53041 * 109.31079 * 54.63599 * 17 16 15 19 19 C 1.53041 * 109.53849 * 298.63682 * 18 17 16 20 20 H 1.08997 * 109.49539 * 301.38057 * 19 18 17 21 21 C 1.50704 * 109.49548 * 181.31527 * 19 18 17 22 22 H 1.08004 * 120.00359 * 356.20936 * 21 19 18 23 23 C 1.37875 * 119.99647 * 176.21298 * 21 19 18 24 24 N 1.31521 * 119.99789 * 157.13838 * 23 21 19 25 25 Si 1.86800 * 120.00298 * 337.13772 * 23 21 19 26 26 H 1.48501 * 109.47313 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.46982 * 300.00227 * 25 23 21 28 28 H 1.48495 * 109.47171 * 59.99716 * 25 23 21 29 29 C 1.46927 * 120.63244 * 180.55899 * 15 13 11 30 30 H 1.08998 * 109.46873 * 302.32053 * 1 2 3 31 31 H 1.08996 * 109.47299 * 62.32182 * 1 2 3 32 32 H 1.08998 * 109.46823 * 182.32489 * 1 2 3 33 33 H 1.08993 * 109.49508 * 305.52325 * 4 2 1 34 34 H 1.08995 * 109.50207 * 65.59101 * 4 2 1 35 35 H 1.09003 * 109.49740 * 58.58022 * 8 5 4 36 36 H 1.08992 * 109.49648 * 178.64660 * 8 5 4 37 37 H 1.08998 * 109.73760 * 295.11776 * 9 8 5 38 38 H 1.08999 * 109.65837 * 174.55070 * 9 8 5 39 39 H 1.09004 * 109.58559 * 6.62691 * 16 15 13 40 40 H 1.09000 * 109.70339 * 246.26961 * 16 15 13 41 41 H 1.08998 * 109.50150 * 294.68717 * 17 16 15 42 42 H 1.09000 * 109.49873 * 174.58236 * 17 16 15 43 43 H 1.08997 * 109.46460 * 178.60924 * 18 17 16 44 44 H 1.09003 * 109.44800 * 58.65104 * 18 17 16 45 45 H 0.96996 * 120.00382 * 354.95547 * 24 23 21 46 46 H 1.09003 * 109.58768 * 113.79823 * 29 15 13 47 47 H 1.09000 * 109.58492 * 353.37649 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5675 -0.8492 -1.1691 6 9 4.0428 -1.4884 -2.3193 7 9 4.1304 0.4284 -1.0795 8 6 3.9570 -1.6655 0.0655 9 6 3.4657 -0.9401 1.3275 10 7 2.0226 -0.6979 1.1953 11 6 1.1676 -1.1034 2.1550 12 8 -0.0296 -1.0125 1.9788 13 6 1.6938 -1.6648 3.4361 14 8 2.8839 -1.6287 3.6709 15 7 0.8468 -2.2114 4.3307 16 6 -0.5951 -2.2731 4.0554 17 6 -1.0667 -3.7215 4.2186 18 6 -0.6694 -4.2298 5.6064 19 6 0.8543 -4.1993 5.7458 20 1 1.3032 -4.8180 4.9688 21 6 1.2462 -4.7303 7.1007 22 1 0.4835 -4.9995 7.8165 23 6 2.5783 -4.8722 7.4265 24 7 2.9481 -4.8920 8.6885 25 14 3.8580 -5.0363 6.0756 26 1 5.2053 -5.1758 6.6843 27 1 3.5596 -6.2370 5.2544 28 1 3.8262 -3.8272 5.2142 29 6 1.3476 -2.7564 5.5999 30 1 -0.3633 0.5494 0.8684 31 1 -0.3634 0.4773 -0.9100 32 1 -0.3633 -1.0268 0.0417 33 1 1.6030 -1.7268 -1.2892 34 1 1.7655 -0.1698 -2.1367 35 1 3.4984 -2.6527 0.0085 36 1 5.0412 -1.7697 0.1055 37 1 3.9878 0.0109 1.4322 38 1 3.6534 -1.5608 2.2037 39 1 -0.7871 -1.9391 3.0358 40 1 -1.1308 -1.6332 4.7566 41 1 -0.5997 -4.3444 3.4557 42 1 -2.1505 -3.7655 4.1117 43 1 -1.0254 -5.2520 5.7345 44 1 -1.1167 -3.5915 6.3685 45 1 2.2949 -4.7338 9.3879 46 1 0.9722 -2.1562 6.4288 47 1 2.4375 -2.7411 5.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351460985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:58 Heat of formation + Delta-G solvation = -129.341425 kcal Electronic energy + Delta-G solvation = -32652.340378 eV Core-core repulsion = 28086.392792 eV Total energy + Delta-G solvation = -4565.947585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.26528 -47.25466 -41.31211 -39.16903 -37.70860 -36.94405 -33.50625 -33.18904 -32.38905 -31.97133 -30.39826 -28.18046 -26.19953 -25.04115 -24.72407 -23.57957 -22.20086 -21.82763 -21.04038 -19.57170 -18.83823 -17.65926 -17.58042 -17.19069 -16.94180 -16.84359 -16.51775 -16.09016 -15.77914 -15.33684 -14.65013 -14.28731 -14.10241 -14.06721 -13.87321 -13.67156 -13.58672 -13.36372 -13.32955 -13.17763 -12.93766 -12.81364 -12.76168 -12.51564 -12.41371 -12.12821 -11.88625 -11.76340 -11.55344 -11.40402 -11.07211 -10.94598 -10.57943 -10.43230 -10.33476 -9.85755 -9.76826 -9.57204 -9.09816 -9.07816 -8.48632 -8.27008 -8.20001 -6.53147 -4.15844 1.43647 2.21672 3.22301 3.32775 3.42552 3.46838 3.49893 3.62038 3.73919 3.95612 4.02660 4.22296 4.39630 4.47355 4.65917 4.82136 4.91997 5.04940 5.13630 5.18948 5.22030 5.36125 5.36940 5.44100 5.47064 5.59718 5.65421 5.78125 5.83129 5.87442 5.99435 6.10259 6.17423 6.24975 6.30856 6.43298 6.53820 6.59561 6.71430 6.78674 6.91530 7.13162 7.35312 7.56077 7.75677 8.01782 8.20239 8.30640 8.82196 9.50759 10.82817 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003699 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.000325 B = 7567.031465 C = 8813.415570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.142 3.858 3 H 0.087 0.913 4 C -0.170 4.170 5 C 0.287 3.713 6 F -0.201 7.201 7 F -0.198 7.198 8 C -0.174 4.174 9 C 0.067 3.933 10 N -0.585 5.585 11 C 0.517 3.483 12 O -0.503 6.503 13 C 0.492 3.508 14 O -0.523 6.523 15 N -0.562 5.562 16 C 0.052 3.948 17 C -0.134 4.134 18 C -0.104 4.104 19 C 0.016 3.984 20 H 0.023 0.977 21 C -0.607 4.607 22 H 0.060 0.940 23 C 0.040 3.960 24 N -0.893 5.893 25 Si 1.023 2.977 26 H -0.285 1.285 27 H -0.285 1.285 28 H -0.260 1.260 29 C 0.097 3.903 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.270 0.730 46 H 0.067 0.933 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.556 9.836 -20.206 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.209 4.209 5 C 0.250 3.750 6 F -0.182 7.182 7 F -0.179 7.179 8 C -0.213 4.213 9 C -0.055 4.055 10 N -0.318 5.318 11 C 0.302 3.698 12 O -0.380 6.380 13 C 0.275 3.725 14 O -0.403 6.403 15 N -0.292 5.292 16 C -0.069 4.069 17 C -0.172 4.172 18 C -0.141 4.141 19 C -0.004 4.004 20 H 0.041 0.959 21 C -0.645 4.645 22 H 0.078 0.922 23 C -0.167 4.167 24 N -0.525 5.525 25 Si 0.851 3.149 26 H -0.210 1.210 27 H -0.211 1.211 28 H -0.186 1.186 29 C -0.023 4.023 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.179 0.821 39 H 0.162 0.838 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.944 9.666 -20.415 22.671 hybrid contribution -1.434 0.258 0.176 1.468 sum -3.378 9.924 -20.238 22.792 Atomic orbital electron populations 1.22267 0.91152 1.04442 1.01750 1.21380 0.97017 0.95481 0.82198 0.89526 1.23041 0.92093 1.05020 1.00723 1.21133 0.92164 0.77442 0.84212 1.93019 1.90173 1.81986 1.53033 1.93003 1.87125 1.41343 1.96444 1.23082 1.04686 1.00564 0.92965 1.23113 0.78372 1.03499 1.00472 1.48101 1.08232 1.56164 1.19329 1.20482 0.86120 0.78379 0.84775 1.90414 1.14903 1.53773 1.78954 1.19984 0.86682 0.80749 0.85108 1.90435 1.14971 1.58506 1.76357 1.48506 1.08256 1.53948 1.18507 1.23161 0.79014 0.97630 1.07068 1.21970 1.00039 0.95917 0.99280 1.21500 0.98144 1.00196 0.94307 1.19253 0.92142 0.90713 0.98280 0.95879 1.21859 0.94304 1.48946 0.99387 0.92204 1.25757 0.98248 0.92760 0.99924 1.70854 1.37609 1.43692 1.00385 0.84344 0.76519 0.78070 0.76012 1.21026 1.21103 1.18605 1.22963 1.01355 0.97062 0.80944 0.90148 0.93204 0.90423 0.88066 0.88121 0.88271 0.87850 0.90107 0.82144 0.83809 0.91884 0.92347 0.91723 0.92636 0.92896 0.91977 0.91503 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.59 37.16 0.28 -0.98 16 2 C 0.14 1.32 3.28 -67.60 -0.22 1.09 16 3 H 0.09 0.76 7.93 -51.93 -0.41 0.35 16 4 C -0.17 -1.38 4.91 -26.61 -0.13 -1.51 16 5 C 0.29 2.75 2.10 -26.69 -0.06 2.69 16 6 F -0.20 -2.16 17.06 2.25 0.04 -2.12 16 7 F -0.20 -2.12 16.10 2.25 0.04 -2.09 16 8 C -0.17 -1.65 5.64 -26.38 -0.15 -1.80 16 9 C 0.07 0.75 5.84 -3.48 -0.02 0.73 16 10 N -0.58 -6.78 2.97 -165.46 -0.49 -7.27 16 11 C 0.52 7.19 7.57 -11.59 -0.09 7.10 16 12 O -0.50 -6.85 8.45 5.49 0.05 -6.80 16 13 C 0.49 8.41 7.62 -11.59 -0.09 8.32 16 14 O -0.52 -9.84 12.57 5.50 0.07 -9.77 16 15 N -0.56 -10.15 2.97 -173.27 -0.51 -10.66 16 16 C 0.05 0.81 6.17 -3.71 -0.02 0.78 16 17 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 18 C -0.10 -1.99 5.11 -26.69 -0.14 -2.12 16 19 C 0.02 0.36 1.84 -91.65 -0.17 0.19 16 20 H 0.02 0.55 6.82 -51.93 -0.35 0.19 16 21 C -0.61 -16.38 8.80 -34.44 -0.30 -16.68 16 22 H 0.06 1.73 7.99 -52.48 -0.42 1.31 16 23 C 0.04 1.13 5.28 -17.82 -0.09 1.04 16 24 N -0.89 -26.69 13.70 55.43 0.76 -25.93 16 25 Si 1.02 24.80 26.56 -169.99 -4.52 20.28 16 26 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.26 -6.04 5.69 56.52 0.32 -5.72 16 29 C 0.10 2.08 5.38 -3.71 -0.02 2.06 16 30 H 0.08 0.85 6.71 -51.93 -0.35 0.50 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.80 6.79 -51.93 -0.35 0.44 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 38 H 0.16 2.21 4.24 -55.15 -0.23 1.98 16 39 H 0.15 2.08 3.89 -56.64 -0.22 1.86 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.27 7.99 8.73 -40.82 -0.36 7.64 16 46 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 47 H 0.09 2.18 3.98 -51.93 -0.21 1.97 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -29.58 358.04 -7.39 -36.97 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.84 Total: 3.30 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -1.38 Total: -1.33 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.25 Total: -43.86 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.12 Total: -16.57 kcal Atomic # 9 Polarization: -4.28 SS G_CDS: 0.07 Total: -4.21 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.52 Total: 20.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.58 -7.39 -36.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351460985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.368 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds