Wall clock time and date at job start Wed Apr 1 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.58612 * 2 1 4 4 C 1.53192 * 109.58734 * 239.57649 * 2 1 3 5 5 C 1.53045 * 109.31074 * 185.57384 * 4 2 1 6 6 F 1.39901 * 109.45537 * 181.38080 * 5 4 2 7 7 F 1.39898 * 109.46253 * 301.35600 * 5 4 2 8 8 C 1.53044 * 109.53907 * 61.36553 * 5 4 2 9 9 C 1.53627 * 109.23768 * 298.50814 * 8 5 4 10 10 N 1.46921 * 109.59086 * 120.27864 * 2 1 3 11 11 C 1.34772 * 120.63165 * 353.38004 * 10 2 1 12 12 O 1.21354 * 119.99880 * 7.25395 * 11 10 2 13 13 C 1.49449 * 120.00317 * 187.25674 * 11 10 2 14 14 O 1.21350 * 119.99761 * 7.63826 * 13 11 10 15 15 N 1.34776 * 120.00166 * 187.64149 * 13 11 10 16 16 C 1.46923 * 120.63158 * 0.53986 * 15 13 11 17 17 C 1.53194 * 108.77814 * 126.41006 * 16 15 13 18 18 C 1.53041 * 109.31079 * 54.63599 * 17 16 15 19 19 C 1.53041 * 109.53849 * 298.63682 * 18 17 16 20 20 H 1.08997 * 109.49539 * 301.38057 * 19 18 17 21 21 C 1.50704 * 109.49548 * 181.31527 * 19 18 17 22 22 H 1.08004 * 120.00359 * 356.20936 * 21 19 18 23 23 C 1.37875 * 119.99647 * 176.21298 * 21 19 18 24 24 N 1.31521 * 119.99789 * 157.13838 * 23 21 19 25 25 Si 1.86800 * 120.00298 * 337.13772 * 23 21 19 26 26 H 1.48501 * 109.47313 * 180.02562 * 25 23 21 27 27 H 1.48499 * 109.46982 * 300.00227 * 25 23 21 28 28 H 1.48495 * 109.47171 * 59.99716 * 25 23 21 29 29 C 1.46927 * 120.63244 * 180.55899 * 15 13 11 30 30 H 1.08998 * 109.46873 * 302.32053 * 1 2 3 31 31 H 1.08996 * 109.47299 * 62.32182 * 1 2 3 32 32 H 1.08998 * 109.46823 * 182.32489 * 1 2 3 33 33 H 1.08993 * 109.49508 * 305.52325 * 4 2 1 34 34 H 1.08995 * 109.50207 * 65.59101 * 4 2 1 35 35 H 1.09003 * 109.49740 * 58.58022 * 8 5 4 36 36 H 1.08992 * 109.49648 * 178.64660 * 8 5 4 37 37 H 1.08998 * 109.73760 * 295.11776 * 9 8 5 38 38 H 1.08999 * 109.65837 * 174.55070 * 9 8 5 39 39 H 1.09004 * 109.58559 * 6.62691 * 16 15 13 40 40 H 1.09000 * 109.70339 * 246.26961 * 16 15 13 41 41 H 1.08998 * 109.50150 * 294.68717 * 17 16 15 42 42 H 1.09000 * 109.49873 * 174.58236 * 17 16 15 43 43 H 1.08997 * 109.46460 * 178.60924 * 18 17 16 44 44 H 1.09003 * 109.44800 * 58.65104 * 18 17 16 45 45 H 0.96996 * 120.00382 * 354.95547 * 24 23 21 46 46 H 1.09003 * 109.58768 * 113.79823 * 29 15 13 47 47 H 1.09000 * 109.58492 * 353.37649 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2445 5 6 3.5675 -0.8492 -1.1691 6 9 4.0428 -1.4884 -2.3193 7 9 4.1304 0.4284 -1.0795 8 6 3.9570 -1.6655 0.0655 9 6 3.4657 -0.9401 1.3275 10 7 2.0226 -0.6979 1.1953 11 6 1.1676 -1.1034 2.1550 12 8 -0.0296 -1.0125 1.9788 13 6 1.6938 -1.6648 3.4361 14 8 2.8839 -1.6287 3.6709 15 7 0.8468 -2.2114 4.3307 16 6 -0.5951 -2.2731 4.0554 17 6 -1.0667 -3.7215 4.2186 18 6 -0.6694 -4.2298 5.6064 19 6 0.8543 -4.1993 5.7458 20 1 1.3032 -4.8180 4.9688 21 6 1.2462 -4.7303 7.1007 22 1 0.4835 -4.9995 7.8165 23 6 2.5783 -4.8722 7.4265 24 7 2.9481 -4.8920 8.6885 25 14 3.8580 -5.0363 6.0756 26 1 5.2053 -5.1758 6.6843 27 1 3.5596 -6.2370 5.2544 28 1 3.8262 -3.8272 5.2142 29 6 1.3476 -2.7564 5.5999 30 1 -0.3633 0.5494 0.8684 31 1 -0.3634 0.4773 -0.9100 32 1 -0.3633 -1.0268 0.0417 33 1 1.6030 -1.7268 -1.2892 34 1 1.7655 -0.1698 -2.1367 35 1 3.4984 -2.6527 0.0085 36 1 5.0412 -1.7697 0.1055 37 1 3.9878 0.0109 1.4322 38 1 3.6534 -1.5608 2.2037 39 1 -0.7871 -1.9391 3.0358 40 1 -1.1308 -1.6332 4.7566 41 1 -0.5997 -4.3444 3.4557 42 1 -2.1505 -3.7655 4.1117 43 1 -1.0254 -5.2520 5.7345 44 1 -1.1167 -3.5915 6.3685 45 1 2.2949 -4.7338 9.3879 46 1 0.9722 -2.1562 6.4288 47 1 2.4375 -2.7411 5.5993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351460985.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:57 Heat of formation + Delta-G solvation = -147.118747 kcal Electronic energy + Delta-G solvation = -32653.111260 eV Core-core repulsion = 28086.392792 eV Total energy + Delta-G solvation = -4566.718468 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.03562 -48.03401 -42.43865 -40.41195 -38.92448 -38.15558 -35.35985 -34.00878 -33.68294 -33.15678 -32.07550 -28.98361 -27.48071 -26.73992 -25.75267 -24.67783 -23.42747 -23.09336 -22.04877 -20.93321 -20.18566 -19.71099 -18.39409 -18.17109 -18.09008 -17.82733 -17.38824 -17.18606 -16.80443 -16.39415 -15.93938 -15.74435 -15.54994 -15.32936 -15.14910 -14.92128 -14.74486 -14.52128 -14.39124 -14.09293 -14.03574 -13.95906 -13.75149 -13.64172 -13.55048 -13.30211 -13.06115 -12.81818 -12.74821 -12.60585 -12.29079 -12.16104 -12.07780 -11.99305 -11.70924 -11.57919 -11.38585 -11.03480 -10.97925 -10.43478 -10.02572 -9.69379 -9.61085 -8.76197 -6.39444 0.24899 1.12876 1.44885 1.50641 1.67627 2.01529 2.21719 2.44186 2.70510 2.96478 2.98824 3.04309 3.24084 3.32297 3.62352 3.91920 4.01786 4.06308 4.11691 4.18711 4.20885 4.35231 4.41581 4.44905 4.52881 4.56030 4.62685 4.71414 4.75728 4.80172 4.84900 4.89352 4.93196 4.97682 5.10817 5.12325 5.16367 5.26356 5.38136 5.48342 5.55543 5.59306 5.87888 6.01316 6.06385 6.25300 6.56366 6.62058 6.86760 7.34373 8.58123 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.003699 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.000325 B = 7567.031465 C = 8813.415570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.141 3.859 3 H 0.096 0.904 4 C -0.163 4.163 5 C 0.285 3.715 6 F -0.207 7.207 7 F -0.205 7.205 8 C -0.171 4.171 9 C 0.068 3.932 10 N -0.577 5.577 11 C 0.525 3.475 12 O -0.499 6.499 13 C 0.486 3.514 14 O -0.544 6.544 15 N -0.571 5.571 16 C 0.054 3.946 17 C -0.124 4.124 18 C -0.101 4.101 19 C 0.014 3.986 20 H 0.020 0.980 21 C -0.607 4.607 22 H 0.028 0.972 23 C -0.004 4.004 24 N -0.928 5.928 25 Si 1.063 2.937 26 H -0.289 1.289 27 H -0.267 1.267 28 H -0.247 1.247 29 C 0.110 3.890 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.258 0.742 46 H 0.055 0.945 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 10.839 -23.919 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.202 4.202 5 C 0.249 3.751 6 F -0.188 7.188 7 F -0.186 7.186 8 C -0.209 4.209 9 C -0.053 4.053 10 N -0.310 5.310 11 C 0.309 3.691 12 O -0.377 6.377 13 C 0.270 3.730 14 O -0.425 6.425 15 N -0.301 5.301 16 C -0.066 4.066 17 C -0.162 4.162 18 C -0.139 4.139 19 C -0.005 4.005 20 H 0.038 0.962 21 C -0.645 4.645 22 H 0.046 0.954 23 C -0.205 4.205 24 N -0.562 5.562 25 Si 0.886 3.114 26 H -0.215 1.215 27 H -0.192 1.192 28 H -0.172 1.172 29 C -0.012 4.012 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.104 0.896 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.854 10.682 -24.171 26.580 hybrid contribution -1.182 -0.011 1.332 1.781 sum -4.036 10.672 -22.840 25.531 Atomic orbital electron populations 1.22170 0.90639 1.03854 1.02399 1.21588 0.97378 0.95754 0.81379 0.88619 1.23033 0.90682 1.05694 1.00787 1.21259 0.93060 0.76978 0.83802 1.93010 1.90358 1.82108 1.53314 1.92994 1.87373 1.41803 1.96450 1.23046 1.05320 1.00524 0.92052 1.22961 0.78319 1.03517 1.00534 1.48128 1.08085 1.55371 1.19378 1.19776 0.86305 0.78996 0.84072 1.90406 1.14602 1.54055 1.78631 1.20652 0.86288 0.80044 0.86032 1.90459 1.16000 1.58906 1.77133 1.48456 1.09558 1.54519 1.17583 1.23381 0.77344 0.97683 1.08215 1.21922 1.02170 0.95712 0.96396 1.21430 0.95362 1.00217 0.96906 1.19196 0.94858 0.91151 0.95331 0.96221 1.22086 0.93484 1.48149 1.00802 0.95396 1.26909 1.00606 0.92258 1.00761 1.70954 1.37450 1.46734 1.01091 0.83818 0.74199 0.79210 0.74196 1.21506 1.19243 1.17172 1.22354 0.99896 0.96222 0.82763 0.91630 0.90604 0.91354 0.87359 0.85930 0.87736 0.86989 0.89582 0.84401 0.82147 0.91258 0.92116 0.88371 0.93064 0.93421 0.93292 0.92707 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 7.59 71.98 0.55 -1.40 16 2 C 0.14 2.13 3.28 44.97 0.15 2.27 16 3 H 0.10 1.35 7.93 -2.38 -0.02 1.33 16 4 C -0.16 -2.03 4.91 30.67 0.15 -1.88 16 5 C 0.29 4.64 2.10 30.62 0.06 4.70 16 6 F -0.21 -3.87 17.06 44.97 0.77 -3.10 16 7 F -0.21 -3.85 16.10 44.97 0.72 -3.12 16 8 C -0.17 -2.83 5.64 30.82 0.17 -2.66 16 9 C 0.07 1.41 5.84 86.51 0.50 1.91 16 10 N -0.58 -11.95 2.97 -795.76 -2.36 -14.31 16 11 C 0.52 13.42 7.57 87.27 0.66 14.08 16 12 O -0.50 -12.16 8.45 -3.26 -0.03 -12.19 16 13 C 0.49 16.04 7.62 87.27 0.67 16.70 16 14 O -0.54 -20.24 12.57 -3.25 -0.04 -20.28 16 15 N -0.57 -19.99 2.97 -820.48 -2.44 -22.43 16 16 C 0.05 1.52 6.17 86.36 0.53 2.06 16 17 C -0.12 -3.53 6.08 30.67 0.19 -3.34 16 18 C -0.10 -3.80 5.11 30.62 0.16 -3.65 16 19 C 0.01 0.66 1.84 -11.46 -0.02 0.63 16 20 H 0.02 0.92 6.82 -2.39 -0.02 0.90 16 21 C -0.61 -33.79 8.80 25.60 0.23 -33.56 16 22 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 23 C 0.00 -0.26 5.28 84.65 0.45 0.19 16 24 N -0.93 -57.55 13.70 21.45 0.29 -57.26 16 25 Si 1.06 50.95 26.56 68.60 1.82 52.77 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.25 -11.26 5.69 99.48 0.57 -10.69 16 29 C 0.11 4.73 5.38 86.36 0.46 5.19 16 30 H 0.06 1.18 6.71 -2.39 -0.02 1.17 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.15 6.79 -2.39 -0.02 1.14 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.09 1.70 7.92 -2.39 -0.02 1.68 16 38 H 0.14 3.67 4.24 -53.40 -0.23 3.44 16 39 H 0.16 4.12 3.89 -76.95 -0.30 3.82 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.26 16.07 8.73 -92.71 -0.81 15.27 16 46 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.07 3.36 3.98 -2.39 -0.01 3.36 16 Total: -1.00 -65.94 358.04 3.96 -61.98 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.31 Total: 16.69 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 4.91 Total: 1.25 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -4.50 Total: -93.99 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.07 Total: -32.47 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 1.49 Total: -6.23 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 1.82 Total: 52.77 kcal Total: -65.94 3.96 -61.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351460985.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.137 kcal (2) G-P(sol) polarization free energy of solvation -65.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds