Wall clock time and date at job start Wed Apr 1 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 H 1.08994 * 109.46837 * 65.00414 * 5 2 1 7 7 N 1.46498 * 109.46837 * 305.00397 * 5 2 1 8 8 C 1.34774 * 120.00213 * 85.00438 * 7 5 2 9 9 O 1.21506 * 120.00073 * 359.97438 * 8 7 5 10 10 O 1.34635 * 120.00008 * 179.97438 * 8 7 5 11 11 C 1.45204 * 116.99991 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47268 * 59.99839 * 11 10 8 13 13 C 1.53003 * 109.47231 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47108 * 299.99403 * 11 10 8 15 15 C 1.50695 * 109.47038 * 185.00511 * 5 2 1 16 16 O 1.21284 * 120.00355 * 120.00018 * 15 5 2 17 17 N 1.34779 * 120.00146 * 299.99910 * 15 5 2 18 18 C 1.47079 * 136.05160 * 359.62974 * 17 15 5 19 19 C 1.53753 * 87.88204 * 152.96439 * 18 17 15 20 20 O 1.42900 * 114.39755 * 272.67097 * 19 18 17 21 21 C 1.50700 * 114.26524 * 139.79346 * 19 18 17 22 22 H 1.08005 * 120.00182 * 266.47273 * 21 19 18 23 23 C 1.37880 * 120.00342 * 86.47407 * 21 19 18 24 24 N 1.31509 * 119.99751 * 0.02562 * 23 21 19 25 25 Si 1.86804 * 120.00134 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47231 * 89.99819 * 25 23 21 27 27 H 1.48503 * 109.46571 * 209.99869 * 25 23 21 28 28 H 1.48501 * 109.46746 * 329.99658 * 25 23 21 29 29 C 1.47059 * 136.06302 * 180.02562 * 17 15 5 30 30 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 32 32 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 34 34 H 0.97003 * 119.99844 * 264.99126 * 7 5 2 35 35 H 1.09003 * 109.47048 * 59.99721 * 12 11 10 36 36 H 1.08997 * 109.47464 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47079 * 300.00211 * 12 11 10 38 38 H 1.09005 * 109.46591 * 59.99958 * 13 11 10 39 39 H 1.08997 * 109.47040 * 180.02562 * 13 11 10 40 40 H 1.09003 * 109.47151 * 300.00320 * 13 11 10 41 41 H 1.09001 * 109.46623 * 60.00166 * 14 11 10 42 42 H 1.08997 * 109.47103 * 179.97438 * 14 11 10 43 43 H 1.08993 * 109.47097 * 300.00361 * 14 11 10 44 44 H 1.08995 * 113.46805 * 267.69633 * 18 17 15 45 45 H 1.08992 * 113.46528 * 38.13772 * 18 17 15 46 46 H 0.96696 * 114.00312 * 273.59089 * 20 19 18 47 47 H 0.97001 * 120.00423 * 180.02562 * 24 23 21 48 48 H 1.09005 * 113.46772 * 321.86326 * 29 17 15 49 49 H 1.09000 * 113.47085 * 92.24375 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 1 1.7518 -0.1584 -2.1369 7 7 1.4559 -2.0633 -1.3108 8 6 0.2390 -2.2440 -1.8612 9 8 -0.3739 -1.2936 -2.3058 10 8 -0.2977 -3.4774 -1.9183 11 6 -1.6119 -3.5971 -2.5241 12 6 -1.5525 -3.1072 -3.9723 13 6 -2.0533 -5.0619 -2.4994 14 6 -2.6144 -2.7487 -1.7393 15 6 3.5419 -0.8295 -1.1887 16 8 4.0722 -1.9203 -1.1964 17 7 4.2960 0.2858 -1.1261 18 6 4.0438 1.7347 -1.1034 19 6 5.3670 1.8953 -0.3371 20 8 5.2470 1.7686 1.0812 21 6 6.1877 3.0860 -0.7612 22 1 6.9553 2.9729 -1.5125 23 6 5.9586 4.3199 -0.1902 24 7 5.0243 4.4576 0.7250 25 14 6.9754 5.7960 -0.7165 26 1 6.3082 6.4759 -1.8556 27 1 7.0994 6.7425 0.4212 28 1 8.3268 5.3429 -1.1331 29 6 5.7331 0.5901 -1.0574 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7209 -1.5952 1.2330 34 1 1.9450 -2.8220 -0.9557 35 1 -0.8382 -3.7117 -4.5313 36 1 -2.5391 -3.1966 -4.4269 37 1 -1.2378 -2.0638 -3.9902 38 1 -2.0955 -5.4113 -1.4678 39 1 -3.0396 -5.1518 -2.9546 40 1 -1.3390 -5.6661 -3.0587 41 1 -2.2998 -1.7052 -1.7572 42 1 -3.6008 -2.8382 -2.1943 43 1 -2.6567 -3.0977 -0.7076 44 1 4.0564 2.1930 -2.0922 45 1 3.1662 2.0133 -0.5202 46 1 5.0163 2.5925 1.5316 47 1 4.8628 5.3258 1.1266 48 1 6.2950 -0.1064 -0.4350 49 1 6.1911 0.7459 -2.0342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362627810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:00 Heat of formation + Delta-G solvation = -169.399119 kcal Electronic energy + Delta-G solvation = -32646.337698 eV Core-core repulsion = 28189.740597 eV Total energy + Delta-G solvation = -4456.597102 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16519 -39.95498 -38.46401 -37.15747 -36.66276 -34.58097 -34.05370 -33.82207 -32.19746 -30.90444 -29.26531 -27.65475 -27.60243 -27.22158 -25.26928 -25.04236 -22.87232 -21.57212 -20.31280 -20.16801 -18.82665 -18.19110 -17.44172 -17.09975 -16.86960 -16.34925 -16.03470 -15.75682 -15.32233 -15.11839 -14.82328 -14.80386 -14.47186 -14.22353 -13.88950 -13.68087 -13.36308 -12.97693 -12.75878 -12.63175 -12.52823 -12.39863 -12.18683 -12.15282 -12.09083 -11.97360 -11.84573 -11.58926 -11.56214 -11.49165 -11.27195 -11.07777 -10.86908 -10.57921 -10.49971 -10.33634 -10.20914 -10.12210 -9.73566 -9.37149 -9.05227 -8.79723 -8.42451 -7.93206 -6.42166 -4.52938 1.93092 2.70173 2.97927 3.13163 3.21851 3.24713 3.39551 4.01409 4.16088 4.43881 4.47928 4.52355 4.66534 4.70159 4.76172 4.83800 5.20430 5.21808 5.26132 5.29640 5.30894 5.44419 5.44807 5.53399 5.54938 5.62946 5.73796 5.82950 5.86237 5.92036 6.04403 6.07288 6.11381 6.19751 6.24905 6.39118 6.40277 6.45282 6.54091 6.65923 7.07841 7.32799 7.61030 7.72918 7.77801 8.26156 8.35164 8.50256 8.55928 9.18713 9.50280 10.64293 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002644 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.830053 B =10586.056618 C =10757.050120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.094 3.906 3 H 0.122 0.878 4 O -0.542 6.542 5 C 0.119 3.881 6 H 0.120 0.880 7 N -0.693 5.693 8 C 0.655 3.345 9 O -0.564 6.564 10 O -0.363 6.363 11 C 0.136 3.864 12 C -0.184 4.184 13 C -0.141 4.141 14 C -0.184 4.184 15 C 0.543 3.457 16 O -0.560 6.560 17 N -0.623 5.623 18 C 0.063 3.937 19 C 0.244 3.756 20 O -0.566 6.566 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.896 5.896 25 Si 0.909 3.091 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.271 1.271 29 C 0.109 3.891 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.366 0.634 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.394 0.606 47 H 0.274 0.726 48 H 0.068 0.932 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 -11.381 -5.097 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.034 3.966 3 H 0.140 0.860 4 O -0.346 6.346 5 C 0.011 3.989 6 H 0.137 0.863 7 N -0.354 5.354 8 C 0.409 3.591 9 O -0.453 6.453 10 O -0.278 6.278 11 C 0.100 3.900 12 C -0.241 4.241 13 C -0.198 4.198 14 C -0.241 4.241 15 C 0.331 3.669 16 O -0.440 6.440 17 N -0.355 5.355 18 C -0.060 4.060 19 C 0.202 3.798 20 O -0.379 6.379 21 C -0.573 4.573 22 H 0.091 0.909 23 C -0.130 4.130 24 N -0.536 5.536 25 Si 0.736 3.264 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.195 1.195 29 C -0.013 4.013 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.212 0.788 34 H 0.253 0.747 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.087 0.913 46 H 0.250 0.750 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.099 -11.603 -5.237 18.995 hybrid contribution 0.049 0.534 -0.320 0.624 sum -14.049 -11.069 -5.557 18.730 Atomic orbital electron populations 1.22543 0.95131 1.02318 1.03155 1.22480 0.93878 0.97305 0.82987 0.86019 1.86758 1.76804 1.28256 1.42781 1.21532 0.91525 0.83340 1.02551 0.86254 1.44358 1.16759 1.10854 1.63443 1.17855 0.81848 0.81868 0.77538 1.90900 1.61565 1.41147 1.51736 1.86317 1.35555 1.29828 1.76103 1.22072 0.78376 0.96753 0.92833 1.22523 1.02758 1.04510 0.94333 1.21864 1.01656 0.92951 1.03336 1.22529 0.98721 1.02874 0.99989 1.19426 0.87355 0.83333 0.76793 1.90640 1.73843 1.26416 1.53092 1.49523 1.10255 1.06416 1.69299 1.24502 1.03711 0.76237 1.01510 1.19516 0.89323 0.90454 0.80495 1.86081 1.92699 1.40835 1.18241 1.21424 1.19970 0.92337 1.23556 0.90924 1.25078 0.94536 0.99335 0.94074 1.69262 1.31574 1.25755 1.27045 0.86312 0.80480 0.81316 0.78312 1.20299 1.20879 1.19532 1.23382 0.81020 0.96940 0.99938 0.91972 0.90201 0.92978 0.78810 0.74747 0.92185 0.91206 0.89215 0.91455 0.90171 0.91454 0.89136 0.91207 0.92194 0.89748 0.91319 0.74977 0.91519 0.91328 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 8.02 37.16 0.30 -2.02 16 2 C 0.09 1.45 3.34 -26.73 -0.09 1.36 16 3 H 0.12 2.06 5.35 -51.93 -0.28 1.79 16 4 O -0.54 -9.04 12.82 -35.23 -0.45 -9.49 16 5 C 0.12 1.85 2.44 -69.09 -0.17 1.68 16 6 H 0.12 1.84 7.58 -51.93 -0.39 1.45 16 7 N -0.69 -9.67 4.35 -59.87 -0.26 -9.93 16 8 C 0.66 8.90 6.24 54.05 0.34 9.24 16 9 O -0.56 -8.16 9.01 -19.28 -0.17 -8.34 16 10 O -0.36 -4.46 9.94 -40.31 -0.40 -4.86 16 11 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 12 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 13 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 14 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 15 C 0.54 10.47 6.99 -10.99 -0.08 10.39 16 16 O -0.56 -11.97 16.61 5.55 0.09 -11.88 16 17 N -0.62 -12.58 3.63 -185.03 -0.67 -13.26 16 18 C 0.06 1.29 7.51 -8.36 -0.06 1.22 16 19 C 0.24 5.67 1.58 -91.12 -0.14 5.53 16 20 O -0.57 -14.40 13.55 -35.23 -0.48 -14.87 16 21 C -0.53 -12.97 8.70 -34.44 -0.30 -13.27 16 22 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 23 C 0.07 1.76 5.39 -17.82 -0.10 1.66 16 24 N -0.90 -22.16 11.01 55.43 0.61 -21.55 16 25 Si 0.91 19.01 29.54 -169.99 -5.02 13.99 16 26 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 29 C 0.11 2.31 8.02 -8.50 -0.07 2.24 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.09 7.18 -51.93 -0.37 0.71 16 32 H 0.05 0.68 5.92 -51.93 -0.31 0.37 16 33 H 0.37 4.93 8.66 45.56 0.39 5.33 16 34 H 0.42 5.72 7.90 -40.82 -0.32 5.40 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 1.04 5.88 -51.93 -0.31 0.74 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 45 H 0.07 1.39 5.73 -51.93 -0.30 1.09 16 46 H 0.39 10.18 6.32 45.56 0.29 10.47 16 47 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 48 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 388.75 15.07 5.86 5.86 Total: -1.00 -28.28 388.75 -6.51 -34.79 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -6.09 Total: 23.84 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 0.48 Total: 15.70 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.32 Total: -44.73 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -1.41 Total: -49.44 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.28 -6.51 -34.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362627810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.608 kcal (2) G-P(sol) polarization free energy of solvation -28.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds