Wall clock time and date at job start Wed Apr 1 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47269 * 2 1 4 4 O 1.42903 * 109.46459 * 119.99893 * 2 1 3 5 5 C 1.53001 * 109.47376 * 239.99703 * 2 1 3 6 6 H 1.08994 * 109.46837 * 65.00414 * 5 2 1 7 7 N 1.46498 * 109.46837 * 305.00397 * 5 2 1 8 8 C 1.34774 * 120.00213 * 85.00438 * 7 5 2 9 9 O 1.21506 * 120.00073 * 359.97438 * 8 7 5 10 10 O 1.34635 * 120.00008 * 179.97438 * 8 7 5 11 11 C 1.45204 * 116.99991 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47268 * 59.99839 * 11 10 8 13 13 C 1.53003 * 109.47231 * 179.97438 * 11 10 8 14 14 C 1.53000 * 109.47108 * 299.99403 * 11 10 8 15 15 C 1.50695 * 109.47038 * 185.00511 * 5 2 1 16 16 O 1.21284 * 120.00355 * 120.00018 * 15 5 2 17 17 N 1.34779 * 120.00146 * 299.99910 * 15 5 2 18 18 C 1.47079 * 136.05160 * 359.62974 * 17 15 5 19 19 C 1.53753 * 87.88204 * 152.96439 * 18 17 15 20 20 O 1.42900 * 114.39755 * 272.67097 * 19 18 17 21 21 C 1.50700 * 114.26524 * 139.79346 * 19 18 17 22 22 H 1.08005 * 120.00182 * 266.47273 * 21 19 18 23 23 C 1.37880 * 120.00342 * 86.47407 * 21 19 18 24 24 N 1.31509 * 119.99751 * 0.02562 * 23 21 19 25 25 Si 1.86804 * 120.00134 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47231 * 89.99819 * 25 23 21 27 27 H 1.48503 * 109.46571 * 209.99869 * 25 23 21 28 28 H 1.48501 * 109.46746 * 329.99658 * 25 23 21 29 29 C 1.47059 * 136.06302 * 180.02562 * 17 15 5 30 30 H 1.08997 * 109.47258 * 300.00172 * 1 2 3 31 31 H 1.08997 * 109.46943 * 60.00345 * 1 2 3 32 32 H 1.08999 * 109.47269 * 180.02562 * 1 2 3 33 33 H 0.96700 * 114.00311 * 60.00313 * 4 2 1 34 34 H 0.97003 * 119.99844 * 264.99126 * 7 5 2 35 35 H 1.09003 * 109.47048 * 59.99721 * 12 11 10 36 36 H 1.08997 * 109.47464 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.47079 * 300.00211 * 12 11 10 38 38 H 1.09005 * 109.46591 * 59.99958 * 13 11 10 39 39 H 1.08997 * 109.47040 * 180.02562 * 13 11 10 40 40 H 1.09003 * 109.47151 * 300.00320 * 13 11 10 41 41 H 1.09001 * 109.46623 * 60.00166 * 14 11 10 42 42 H 1.08997 * 109.47103 * 179.97438 * 14 11 10 43 43 H 1.08993 * 109.47097 * 300.00361 * 14 11 10 44 44 H 1.08995 * 113.46805 * 267.69633 * 18 17 15 45 45 H 1.08992 * 113.46528 * 38.13772 * 18 17 15 46 46 H 0.96696 * 114.00312 * 273.59089 * 20 19 18 47 47 H 0.97001 * 120.00423 * 180.02562 * 24 23 21 48 48 H 1.09005 * 113.46772 * 321.86326 * 29 17 15 49 49 H 1.09000 * 113.47085 * 92.24375 * 29 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0062 -0.6737 1.1669 5 6 2.0401 -0.7213 -1.2492 6 1 1.7518 -0.1584 -2.1369 7 7 1.4559 -2.0633 -1.3108 8 6 0.2390 -2.2440 -1.8612 9 8 -0.3739 -1.2936 -2.3058 10 8 -0.2977 -3.4774 -1.9183 11 6 -1.6119 -3.5971 -2.5241 12 6 -1.5525 -3.1072 -3.9723 13 6 -2.0533 -5.0619 -2.4994 14 6 -2.6144 -2.7487 -1.7393 15 6 3.5419 -0.8295 -1.1887 16 8 4.0722 -1.9203 -1.1964 17 7 4.2960 0.2858 -1.1261 18 6 4.0438 1.7347 -1.1034 19 6 5.3670 1.8953 -0.3371 20 8 5.2470 1.7686 1.0812 21 6 6.1877 3.0860 -0.7612 22 1 6.9553 2.9729 -1.5125 23 6 5.9586 4.3199 -0.1902 24 7 5.0243 4.4576 0.7250 25 14 6.9754 5.7960 -0.7165 26 1 6.3082 6.4759 -1.8556 27 1 7.0994 6.7425 0.4212 28 1 8.3268 5.3429 -1.1331 29 6 5.7331 0.5901 -1.0574 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7209 -1.5952 1.2330 34 1 1.9450 -2.8220 -0.9557 35 1 -0.8382 -3.7117 -4.5313 36 1 -2.5391 -3.1966 -4.4269 37 1 -1.2378 -2.0638 -3.9902 38 1 -2.0955 -5.4113 -1.4678 39 1 -3.0396 -5.1518 -2.9546 40 1 -1.3390 -5.6661 -3.0587 41 1 -2.2998 -1.7052 -1.7572 42 1 -3.6008 -2.8382 -2.1943 43 1 -2.6567 -3.0977 -0.7076 44 1 4.0564 2.1930 -2.0922 45 1 3.1662 2.0133 -0.5202 46 1 5.0163 2.5925 1.5316 47 1 4.8628 5.3258 1.1266 48 1 6.2950 -0.1064 -0.4350 49 1 6.1911 0.7459 -2.0342 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362627810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:59 Heat of formation + Delta-G solvation = -192.606792 kcal Electronic energy + Delta-G solvation = -32647.344059 eV Core-core repulsion = 28189.740597 eV Total energy + Delta-G solvation = -4457.603462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29048 -41.38996 -39.86008 -38.60923 -37.79662 -35.92033 -35.61278 -34.80144 -34.08738 -32.14720 -30.80686 -28.71607 -28.32081 -28.27233 -26.97586 -26.68124 -23.93755 -22.87454 -21.76586 -21.29905 -20.20077 -19.56862 -19.10583 -18.35621 -18.12772 -17.51720 -17.33271 -17.08028 -16.89839 -16.52763 -16.32489 -16.00547 -15.70654 -15.43421 -15.04851 -15.02367 -14.66345 -14.44748 -14.09881 -13.99792 -13.66776 -13.46012 -13.37809 -13.35016 -13.16785 -13.00353 -12.89139 -12.82805 -12.79751 -12.74819 -12.48085 -12.33015 -12.27581 -12.21642 -12.01870 -11.64709 -11.38185 -11.30234 -11.09973 -11.01884 -10.65006 -10.30135 -10.19987 -9.61964 -8.25069 -6.42014 0.86455 1.41027 1.48437 1.52487 1.60999 1.65386 1.91296 2.42143 2.95281 2.98948 3.11864 3.38445 3.48804 3.75446 3.76605 3.82038 3.95148 3.96633 4.07088 4.10116 4.17954 4.42046 4.55698 4.62475 4.65038 4.69498 4.75101 4.76808 4.79597 4.81705 4.84240 4.88579 4.90531 4.92989 5.08918 5.16061 5.18850 5.25850 5.31937 5.36194 5.51468 5.75516 5.93095 6.23058 6.58705 6.63780 6.75886 6.94486 7.22240 7.31922 7.53497 8.80765 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002644 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.830053 B =10586.056618 C =10757.050120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 H 0.106 0.894 4 O -0.562 6.562 5 C 0.134 3.866 6 H 0.125 0.875 7 N -0.692 5.692 8 C 0.657 3.343 9 O -0.573 6.573 10 O -0.367 6.367 11 C 0.124 3.876 12 C -0.181 4.181 13 C -0.137 4.137 14 C -0.180 4.180 15 C 0.539 3.461 16 O -0.582 6.582 17 N -0.625 5.625 18 C 0.077 3.923 19 C 0.222 3.778 20 O -0.582 6.582 21 C -0.551 4.551 22 H 0.075 0.925 23 C 0.033 3.967 24 N -0.915 5.915 25 Si 0.969 3.031 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.270 1.270 29 C 0.109 3.891 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.379 0.621 34 H 0.416 0.584 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.388 0.612 47 H 0.276 0.724 48 H 0.054 0.946 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.612 -11.814 -6.101 20.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.124 0.876 4 O -0.368 6.368 5 C 0.025 3.975 6 H 0.143 0.857 7 N -0.353 5.353 8 C 0.412 3.588 9 O -0.462 6.462 10 O -0.282 6.282 11 C 0.088 3.912 12 C -0.238 4.238 13 C -0.194 4.194 14 C -0.237 4.237 15 C 0.329 3.671 16 O -0.464 6.464 17 N -0.357 5.357 18 C -0.046 4.046 19 C 0.181 3.819 20 O -0.394 6.394 21 C -0.589 4.589 22 H 0.093 0.907 23 C -0.168 4.168 24 N -0.556 5.556 25 Si 0.794 3.206 26 H -0.197 1.197 27 H -0.211 1.211 28 H -0.195 1.195 29 C -0.013 4.013 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.244 0.756 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.514 -12.066 -6.255 20.625 hybrid contribution 0.463 0.592 -0.002 0.751 sum -15.051 -11.474 -6.257 19.934 Atomic orbital electron populations 1.22395 0.93263 1.02622 1.03372 1.22408 0.95103 0.96275 0.82427 0.87631 1.86720 1.77340 1.29433 1.43289 1.21300 0.88863 0.84395 1.02905 0.85745 1.44252 1.17090 1.10126 1.63800 1.17847 0.81526 0.82285 0.77191 1.90908 1.61728 1.41633 1.51969 1.86339 1.36874 1.28806 1.76196 1.22481 0.77343 0.98645 0.92713 1.22489 1.04013 1.02752 0.94561 1.21899 1.02814 0.90794 1.03850 1.22487 0.99612 1.01243 1.00371 1.20012 0.88746 0.82571 0.75803 1.90623 1.74705 1.27099 1.53988 1.49517 1.09864 1.06675 1.69606 1.24302 1.02224 0.76335 1.01705 1.19794 0.91158 0.91300 0.79660 1.86064 1.92928 1.40635 1.19822 1.21654 1.20405 0.92959 1.23878 0.90655 1.25749 0.95392 1.01528 0.94108 1.69327 1.32422 1.26269 1.27599 0.85381 0.79037 0.78318 0.77841 1.19668 1.21084 1.19509 1.23386 0.81763 0.95682 1.00456 0.91339 0.90295 0.92575 0.77337 0.74615 0.92369 0.88869 0.91688 0.91174 0.87726 0.91492 0.91409 0.89013 0.91948 0.88309 0.91323 0.75603 0.91385 0.92698 0.87504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.02 71.98 0.58 -3.51 16 2 C 0.10 2.99 3.34 30.60 0.10 3.09 16 3 H 0.11 3.58 5.35 -2.39 -0.01 3.57 16 4 O -0.56 -18.59 12.82 -148.98 -1.91 -20.50 16 5 C 0.13 4.11 2.44 44.24 0.11 4.22 16 6 H 0.12 3.75 7.58 -2.39 -0.02 3.73 16 7 N -0.69 -18.84 4.35 -573.76 -2.50 -21.34 16 8 C 0.66 17.27 6.24 129.79 0.81 18.08 16 9 O -0.57 -16.10 9.01 19.82 0.18 -15.92 16 10 O -0.37 -8.57 9.94 -55.44 -0.55 -9.12 16 11 C 0.12 2.21 1.13 -10.79 -0.01 2.19 16 12 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 13 C -0.14 -1.61 8.85 71.98 0.64 -0.97 16 14 C -0.18 -3.01 8.37 71.98 0.60 -2.41 16 15 C 0.54 20.68 6.99 87.66 0.61 21.29 16 16 O -0.58 -24.88 16.61 -3.04 -0.05 -24.93 16 17 N -0.62 -25.16 3.63 -858.18 -3.12 -28.28 16 18 C 0.08 3.12 7.51 83.27 0.63 3.74 16 19 C 0.22 10.38 1.58 -11.11 -0.02 10.36 16 20 O -0.58 -30.20 13.55 -148.98 -2.02 -32.21 16 21 C -0.55 -26.60 8.70 25.60 0.22 -26.38 16 22 H 0.08 3.51 7.81 -2.91 -0.02 3.48 16 23 C 0.03 1.58 5.39 84.66 0.46 2.03 16 24 N -0.92 -45.33 11.01 21.45 0.24 -45.09 16 25 Si 0.97 38.53 29.54 68.60 2.03 40.56 16 26 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 27 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 28 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 29 C 0.11 4.64 8.02 83.19 0.67 5.30 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 2.06 7.18 -2.39 -0.02 2.05 16 32 H 0.06 1.39 5.92 -2.39 -0.01 1.38 16 33 H 0.38 10.02 8.66 -74.06 -0.64 9.38 16 34 H 0.42 11.27 7.90 -92.71 -0.73 10.54 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 1.47 5.88 -2.39 -0.01 1.46 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 3.70 8.10 -2.39 -0.02 3.68 16 45 H 0.07 2.79 5.73 -2.39 -0.01 2.77 16 46 H 0.39 20.56 6.32 -74.06 -0.47 20.09 16 47 H 0.28 12.99 8.31 -92.71 -0.77 12.22 16 48 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 49 H 0.11 4.03 8.10 -2.39 -0.02 4.01 16 Total: -1.00 -59.76 388.75 -2.54 -62.30 By element: Atomic # 1 Polarization: 60.93 SS G_CDS: -0.83 Total: 60.10 kcal Atomic # 6 Polarization: 28.44 SS G_CDS: 5.99 Total: 34.44 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -5.38 Total: -94.71 kcal Atomic # 8 Polarization: -98.34 SS G_CDS: -4.35 Total: -102.69 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -59.76 -2.54 -62.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362627810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.310 kcal (2) G-P(sol) polarization free energy of solvation -59.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds