Wall clock time and date at job start Wed Apr 1 2020 03:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81402 * 109.46922 * 2 1 4 4 O 1.42103 * 109.47254 * 63.61169 * 3 2 1 5 5 C 1.81402 * 103.00130 * 180.02562 * 3 2 1 6 6 C 1.52993 * 109.47390 * 180.02562 * 5 3 2 7 7 N 1.46494 * 109.47208 * 177.24410 * 6 5 3 8 8 C 1.36737 * 127.13698 * 275.81803 * 7 6 5 9 9 C 1.50703 * 126.34867 * 359.96735 * 8 7 6 10 10 N 1.30304 * 107.30420 * 179.83575 * 8 7 6 11 11 N 1.28524 * 110.05419 * 0.44228 * 10 8 7 12 12 C 1.31218 * 109.85820 * 359.72230 * 11 10 8 13 13 N 1.38579 * 126.46883 * 180.02562 * 12 11 10 14 14 C 1.46902 * 111.00108 * 111.38865 * 13 12 11 15 15 C 1.50694 * 109.47364 * 306.14499 * 14 13 12 16 16 H 1.08001 * 119.99783 * 3.55281 * 15 14 13 17 17 C 1.37879 * 120.00199 * 183.55814 * 15 14 13 18 18 N 1.31516 * 119.99925 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99869 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47046 * 90.00222 * 19 17 15 21 21 H 1.48502 * 109.46826 * 210.00132 * 19 17 15 22 22 H 1.48496 * 109.47196 * 330.00444 * 19 17 15 23 23 C 1.46903 * 111.00464 * 347.43383 * 13 12 11 24 24 C 1.52994 * 109.47338 * 195.23501 * 23 13 12 25 25 O 1.42901 * 109.47314 * 67.22412 * 24 23 13 26 26 C 1.42901 * 114.00286 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47302 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47340 * 300.00396 * 1 2 3 29 29 H 1.09000 * 109.47577 * 59.99955 * 1 2 3 30 30 H 1.09001 * 109.47167 * 119.99704 * 2 1 3 31 31 H 1.09001 * 109.47072 * 240.00070 * 2 1 3 32 32 H 1.09003 * 109.46727 * 299.99677 * 5 3 2 33 33 H 1.08997 * 109.47388 * 59.99335 * 5 3 2 34 34 H 1.09001 * 109.47036 * 297.24285 * 6 5 3 35 35 H 1.08998 * 109.47535 * 57.24525 * 6 5 3 36 36 H 1.08996 * 109.47231 * 89.99466 * 9 8 7 37 37 H 1.09002 * 109.46919 * 209.99989 * 9 8 7 38 38 H 1.09001 * 109.46838 * 329.99874 * 9 8 7 39 39 H 1.09001 * 109.46781 * 66.14408 * 14 13 12 40 40 H 1.09001 * 109.47022 * 186.13852 * 14 13 12 41 41 H 0.96994 * 119.99560 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.46715 * 315.24050 * 23 13 12 43 43 H 1.09000 * 109.46789 * 75.23268 * 23 13 12 44 44 H 1.09005 * 109.46852 * 187.22350 * 24 23 13 45 45 H 1.08995 * 109.47184 * 307.22274 * 24 23 13 46 46 H 1.08997 * 109.47181 * 180.02562 * 26 25 24 47 47 H 1.09000 * 109.46921 * 300.00200 * 26 25 24 48 48 H 1.08998 * 109.46829 * 60.00073 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.7311 2.3554 1.2001 5 6 3.9371 1.5059 -0.0008 6 6 4.6064 2.8817 -0.0002 7 7 6.0605 2.7173 0.0655 8 6 6.8210 2.5371 1.1875 9 6 6.3177 2.4697 2.6064 10 7 8.0613 2.4315 0.8023 11 7 8.1366 2.5412 -0.4761 12 6 6.9379 2.7183 -0.9796 13 7 6.6224 2.8758 -2.3198 14 6 5.8806 1.7134 -2.8262 15 6 6.6574 0.4555 -2.5341 16 1 7.5788 0.5079 -1.9731 17 6 6.1919 -0.7622 -2.9831 18 7 6.8697 -1.8599 -2.7277 19 14 4.5980 -0.8528 -3.9529 20 1 4.8913 -0.7110 -5.4017 21 1 3.9425 -2.1623 -3.7064 22 1 3.6931 0.2428 -3.5216 23 6 7.8301 3.1189 -3.1200 24 6 7.4310 3.6575 -4.4952 25 8 6.8604 4.9595 -4.3496 26 6 6.4518 5.5563 -5.5821 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 4.2405 0.9544 0.8891 33 1 4.2399 0.9545 -0.8909 34 1 4.3419 3.4148 -0.9135 35 1 4.2657 3.4512 0.8645 36 1 6.0847 1.4357 2.8606 37 1 7.0855 2.8460 3.2825 38 1 5.4189 3.0788 2.7023 39 1 4.9080 1.6617 -2.3367 40 1 5.7408 1.8124 -3.9026 41 1 6.5424 -2.7165 -3.0439 42 1 8.4610 3.8490 -2.6129 43 1 8.3798 2.1855 -3.2408 44 1 8.3134 3.7167 -5.1324 45 1 6.6994 2.9889 -4.9489 46 1 6.0300 6.5421 -5.3863 47 1 7.3142 5.6549 -6.2415 48 1 5.7001 4.9272 -6.0587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460547091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:37 Heat of formation + Delta-G solvation = 11.154961 kcal Electronic energy + Delta-G solvation = -30014.467059 eV Core-core repulsion = 26040.744992 eV Total energy + Delta-G solvation = -3973.722067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28149 -38.06757 -36.53752 -35.78207 -35.29344 -32.89588 -32.68096 -31.48542 -30.44443 -29.50568 -27.92403 -26.25436 -25.73070 -24.61296 -23.12720 -22.89310 -21.80803 -20.02151 -19.58574 -17.67747 -17.39140 -16.79187 -16.23814 -16.09849 -15.77377 -15.40762 -15.22190 -14.91157 -14.76813 -14.55459 -14.47623 -14.22775 -13.84087 -13.46481 -13.03271 -12.88209 -12.79222 -12.58798 -12.49821 -12.43883 -12.24594 -12.11008 -11.93802 -11.61699 -11.44533 -11.39381 -11.16766 -11.10957 -10.92207 -10.71203 -10.56600 -10.30414 -10.20876 -9.78503 -9.66179 -9.48371 -9.33838 -8.82302 -8.77808 -8.32260 -7.40385 -6.27474 -4.30838 1.30870 2.43944 2.49114 2.93219 3.03065 3.10243 3.15678 3.60692 3.67523 4.11562 4.16034 4.49929 4.68091 4.76618 4.84829 4.86736 4.87747 5.02065 5.20133 5.23562 5.31102 5.35743 5.46111 5.48889 5.61225 5.62326 5.64916 5.67260 5.75505 5.76109 5.81252 5.87642 5.88599 5.88969 6.04746 6.14222 6.41616 6.54712 6.58945 6.68911 6.75025 7.14006 7.28193 7.43564 7.59119 8.00847 8.23169 8.83710 9.29353 9.51909 10.84921 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007837 B = 0.005084 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3571.855942 B = 5506.134739 C = 6368.447551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.450 4.450 3 S 1.242 4.758 4 O -0.849 6.849 5 C -0.473 4.473 6 C 0.142 3.858 7 N -0.471 5.471 8 C 0.152 3.848 9 C -0.057 4.057 10 N -0.285 5.285 11 N -0.331 5.331 12 C 0.414 3.586 13 N -0.451 5.451 14 C 0.150 3.850 15 C -0.561 4.561 16 H 0.088 0.912 17 C 0.078 3.922 18 N -0.885 5.885 19 Si 0.859 3.141 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.257 1.257 23 C 0.077 3.923 24 C 0.066 3.934 25 O -0.380 6.380 26 C 0.032 3.968 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.265 0.735 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.034 0.966 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.139 8.903 -1.485 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.588 4.588 3 S 1.439 4.561 4 O -0.845 6.845 5 C -0.610 4.610 6 C 0.017 3.983 7 N -0.167 5.167 8 C -0.116 4.116 9 C -0.117 4.117 10 N -0.125 5.125 11 N -0.175 5.175 12 C 0.058 3.942 13 N -0.174 5.174 14 C 0.025 3.975 15 C -0.599 4.599 16 H 0.106 0.894 17 C -0.126 4.126 18 N -0.522 5.522 19 Si 0.685 3.315 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.181 1.181 23 C -0.050 4.050 24 C -0.010 4.010 25 O -0.299 6.299 26 C -0.065 4.065 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.493 9.867 -1.303 14.462 hybrid contribution -0.976 -2.399 0.769 2.701 sum -11.469 7.469 -0.534 13.697 Atomic orbital electron populations 1.21352 0.91983 1.03100 1.02561 1.27525 1.03769 1.19456 1.08068 1.70731 0.85752 0.87581 1.11986 1.93079 1.75896 1.63881 1.51598 1.28281 1.18991 1.03416 1.10282 1.21174 0.77023 0.95190 1.04907 1.45923 1.07703 1.56741 1.06328 1.24397 0.88575 1.07870 0.90760 1.20053 1.01340 1.02981 0.87295 1.73827 1.15733 1.17617 1.05362 1.74592 1.18343 1.22925 1.01637 1.22351 0.85406 0.97779 0.88685 1.59106 1.23280 1.39401 0.95615 1.20571 0.94129 0.86555 0.96225 1.21751 1.10879 0.90132 1.37152 0.89403 1.24938 0.96722 0.95590 0.95330 1.69925 1.38640 0.98463 1.45131 0.87113 0.84585 0.78169 0.81635 1.19662 1.20889 1.18130 1.21950 0.90203 1.01410 0.91442 1.22685 0.97114 0.83961 0.97287 1.87981 1.81151 1.31605 1.29143 1.22668 0.98328 0.98190 0.87357 0.91547 0.92261 0.91322 0.89471 0.86181 0.88707 0.83945 0.87267 0.89192 0.90577 0.89252 0.91172 0.94692 0.93939 0.92456 0.90129 0.89736 0.92916 0.92506 0.90235 0.94720 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.92 37.16 0.37 -0.86 16 2 C -0.45 -4.88 6.64 37.16 0.25 -4.64 16 3 S 1.24 13.93 13.16 -107.50 -1.41 12.51 16 4 O -0.85 -13.43 18.14 -35.23 -0.64 -14.07 16 5 C -0.47 -6.71 6.05 37.15 0.22 -6.49 16 6 C 0.14 2.09 5.24 -4.05 -0.02 2.07 16 7 N -0.47 -8.85 2.81 -114.09 -0.32 -9.17 16 8 C 0.15 2.90 8.07 -154.01 -1.24 1.66 16 9 C -0.06 -0.81 10.26 36.01 0.37 -0.44 16 10 N -0.29 -6.45 12.18 32.99 0.40 -6.05 16 11 N -0.33 -7.84 10.90 30.31 0.33 -7.50 16 12 C 0.41 8.85 5.54 -318.87 -1.77 7.08 16 13 N -0.45 -8.96 4.64 -175.88 -0.82 -9.78 16 14 C 0.15 3.11 3.98 -4.98 -0.02 3.09 16 15 C -0.56 -14.27 8.12 -34.44 -0.28 -14.55 16 16 H 0.09 2.63 6.84 -52.49 -0.36 2.27 16 17 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 18 N -0.88 -25.39 13.96 55.43 0.77 -24.62 16 19 Si 0.86 18.06 27.40 -169.99 -4.66 13.40 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.26 -4.58 6.65 56.52 0.38 -4.21 16 23 C 0.08 1.46 4.73 -3.83 -0.02 1.44 16 24 C 0.07 1.04 6.10 37.15 0.23 1.27 16 25 O -0.38 -5.89 10.68 -35.23 -0.38 -6.27 16 26 C 0.03 0.35 11.01 101.05 1.11 1.47 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.12 1.22 8.14 -51.92 -0.42 0.79 16 32 H 0.09 1.43 8.14 -51.92 -0.42 1.01 16 33 H 0.14 2.29 5.93 -51.93 -0.31 1.99 16 34 H 0.11 1.43 7.97 -51.93 -0.41 1.02 16 35 H 0.09 1.18 7.44 -51.93 -0.39 0.79 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.85 7.40 -51.93 -0.38 0.47 16 39 H 0.04 0.67 4.05 -51.93 -0.21 0.46 16 40 H 0.04 0.85 5.50 -51.93 -0.29 0.56 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 1.55 7.75 -51.93 -0.40 1.14 16 43 H 0.08 1.79 7.01 -51.93 -0.36 1.42 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.90 6.35 -51.93 -0.33 0.57 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 398.09 15.07 6.00 6.00 Total: -1.00 -36.26 398.09 -9.29 -45.55 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.68 Total: 6.95 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.90 Total: -6.95 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.37 Total: -57.11 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -1.02 Total: -20.34 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -4.66 Total: 13.40 kcal Atomic # 16 Polarization: 13.93 SS G_CDS: -1.41 Total: 12.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.26 -9.29 -45.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460547091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.705 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds