Wall clock time and date at job start Wed Apr 1 2020 04:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99672 * 3 2 1 5 5 H 1.48496 * 109.47123 * 29.99373 * 3 2 1 6 6 H 1.48500 * 109.47330 * 150.00161 * 3 2 1 7 7 C 1.37884 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46876 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47528 * 304.99467 * 11 10 9 13 13 N 1.46499 * 109.47245 * 65.00039 * 11 10 9 14 14 C 1.34777 * 120.00065 * 204.99497 * 13 11 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 11 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 11 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 N 1.30886 * 125.89310 * 275.01644 * 18 17 16 20 20 C 1.33654 * 109.77073 * 179.97438 * 19 18 17 21 21 N 1.39604 * 125.60997 * 180.02562 * 20 19 18 22 22 N 1.31200 * 108.77642 * 359.97438 * 20 19 18 23 23 N 1.34338 * 125.89425 * 94.71955 * 18 17 16 24 24 H 0.96994 * 126.76330 * 0.02887 * 23 18 17 25 25 C 1.50702 * 109.46759 * 184.99613 * 11 10 9 26 26 C 1.38232 * 120.00597 * 279.72762 * 25 11 10 27 27 C 1.38234 * 120.00575 * 179.80808 * 26 25 11 28 28 C 1.38237 * 119.99526 * 0.39946 * 27 26 25 29 29 C 1.38233 * 120.00310 * 359.85308 * 28 27 26 30 30 C 1.38234 * 119.99820 * 359.95812 * 29 28 27 31 31 H 0.96994 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47005 * 59.99521 * 9 7 2 33 33 H 1.09007 * 109.46968 * 299.99953 * 9 7 2 34 34 H 1.08996 * 109.47061 * 59.99803 * 10 9 7 35 35 H 1.09002 * 109.46565 * 299.99944 * 10 9 7 36 36 H 0.97000 * 120.00386 * 24.99866 * 13 11 10 37 37 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 38 38 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 39 39 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 40 40 H 0.97006 * 119.99875 * 0.02562 * 21 20 19 41 41 H 0.97000 * 120.00324 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99608 * 359.97438 * 26 25 11 43 43 H 1.07997 * 120.00524 * 180.23184 * 27 26 25 44 44 H 1.07998 * 119.99922 * 179.83089 * 28 27 26 45 45 H 1.08002 * 120.00625 * 179.97438 * 29 28 27 46 46 H 1.08007 * 120.00096 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7872 -5.0070 0.8422 13 7 0.7318 -5.1183 -1.2514 14 6 -0.3697 -5.8933 -1.3003 15 8 -0.7427 -6.4832 -0.3046 16 7 -1.0579 -6.0144 -2.4528 17 6 -2.2587 -6.8520 -2.5043 18 6 -2.8396 -6.8122 -3.8943 19 7 -3.6591 -5.9030 -4.3578 20 6 -3.9702 -6.1800 -5.6278 21 7 -4.8193 -5.4258 -6.4397 22 7 -3.3455 -7.2766 -5.9861 23 7 -2.6011 -7.7007 -4.8733 24 1 -2.0289 -8.4821 -4.8213 25 6 2.4546 -6.1299 0.1262 26 6 3.1454 -6.5741 -0.9857 27 6 4.0422 -7.6197 -0.8702 28 6 4.2421 -8.2265 0.3556 29 6 3.5475 -7.7858 1.4665 30 6 2.6536 -6.7377 1.3518 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6240 -2.5567 0.8904 34 1 2.8712 -3.6040 0.8922 35 1 2.8726 -3.6048 -0.8878 36 1 1.0292 -4.6475 -2.0457 37 1 -0.7605 -5.5435 -3.2470 38 1 -1.9967 -7.8788 -2.2493 39 1 -2.9940 -6.4771 -1.7925 40 1 -5.2394 -4.6244 -6.0900 41 1 -4.9886 -5.7027 -7.3538 42 1 2.9864 -6.1024 -1.9442 43 1 4.5847 -7.9642 -1.7382 44 1 4.9407 -9.0452 0.4453 45 1 3.7033 -8.2602 2.4242 46 1 2.1105 -6.3936 2.2197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471102592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:47 Heat of formation + Delta-G solvation = 81.133807 kcal Electronic energy + Delta-G solvation = -28997.883944 eV Core-core repulsion = 24924.045187 eV Total energy + Delta-G solvation = -4073.838757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31383 -40.09612 -38.85324 -36.09826 -35.29835 -34.39497 -33.17701 -32.21772 -31.60797 -30.71641 -30.33376 -30.30152 -27.25716 -26.08940 -23.61687 -22.48684 -22.24652 -21.37271 -21.08377 -20.75484 -19.97286 -18.75066 -18.08975 -17.00838 -16.71007 -16.39883 -16.14124 -15.93949 -15.61848 -15.41911 -14.90694 -14.82911 -14.48176 -14.35395 -13.88023 -13.62238 -13.30542 -13.20299 -13.01264 -12.79061 -12.53339 -12.14542 -12.03430 -11.72552 -11.69223 -11.13191 -10.96833 -10.93529 -10.64392 -10.54299 -10.27494 -10.23212 -10.04471 -9.80555 -9.57226 -9.22503 -9.15264 -8.75262 -8.64014 -8.61851 -8.43248 -8.35569 -6.00898 -4.04158 1.24713 1.53586 1.58106 2.26237 2.65621 3.00068 3.18415 3.30552 3.37626 3.40493 3.42612 3.97130 4.07503 4.42292 4.44930 4.50817 5.02368 5.05126 5.13505 5.15505 5.28711 5.34733 5.40033 5.61481 5.63146 5.66660 5.77394 5.90399 6.01069 6.12775 6.19427 6.30975 6.36207 6.55714 6.63575 6.66455 6.71343 6.74622 6.90430 6.97963 7.08367 7.11523 7.13973 7.18425 7.65657 7.77095 7.98223 8.09860 8.16618 8.39051 8.78742 9.03048 9.60243 11.09778 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006135 B = 0.003403 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4562.866129 B = 8226.751543 C =12036.588737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.025 3.975 10 C -0.113 4.113 11 C 0.200 3.800 12 H 0.095 0.905 13 N -0.723 5.723 14 C 0.713 3.287 15 O -0.588 6.588 16 N -0.746 5.746 17 C 0.222 3.778 18 C 0.296 3.704 19 N -0.548 5.548 20 C 0.476 3.524 21 N -0.824 5.824 22 N -0.366 5.366 23 N -0.471 5.471 24 H 0.442 0.558 25 C -0.078 4.078 26 C -0.107 4.107 27 C -0.125 4.125 28 C -0.131 4.131 29 C -0.122 4.122 30 C -0.105 4.105 31 H 0.260 0.740 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.398 0.602 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.416 0.584 41 H 0.413 0.587 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -17.853 -8.925 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.012 4.012 10 C -0.151 4.151 11 C 0.095 3.905 12 H 0.113 0.887 13 N -0.376 5.376 14 C 0.413 3.587 15 O -0.466 6.466 16 N -0.404 5.404 17 C 0.094 3.906 18 C 0.015 3.985 19 N -0.283 5.283 20 C 0.104 3.896 21 N -0.381 5.381 22 N -0.206 5.206 23 N -0.191 5.191 24 H 0.288 0.712 25 C -0.079 4.079 26 C -0.125 4.125 27 C -0.143 4.143 28 C -0.149 4.149 29 C -0.140 4.140 30 C -0.124 4.124 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.233 0.767 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.248 0.752 41 H 0.244 0.756 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.110 -18.295 -8.453 20.263 hybrid contribution 0.858 1.154 -0.945 1.720 sum -1.252 -17.141 -9.398 19.588 Atomic orbital electron populations 1.69967 1.05995 1.26603 1.50492 1.25011 0.94802 0.99178 0.95308 0.86633 0.79892 0.83651 0.78046 1.20745 1.21242 1.19893 1.21224 0.92975 0.91038 1.50953 0.92726 1.19088 0.93676 0.90810 0.97623 1.21988 0.99136 0.92273 1.01684 1.20007 0.91249 0.92899 0.86310 0.88680 1.45100 1.27596 1.50477 1.14408 1.15756 0.80088 0.80068 0.82806 1.90920 1.70459 1.51306 1.33912 1.44876 1.28867 1.53830 1.12837 1.19416 0.87354 0.96806 0.86974 1.24026 0.94090 0.86909 0.93445 1.70271 1.20119 1.28281 1.09627 1.20472 0.91888 0.89368 0.87862 1.40997 1.52344 1.30311 1.14445 1.78186 1.18370 1.17017 1.07017 1.47638 1.38630 1.24626 1.08225 0.71194 1.20457 0.97078 0.96886 0.93524 1.20888 0.96320 0.96949 0.98336 1.21058 0.98852 0.96992 0.97422 1.21046 1.00334 1.00340 0.93182 1.21080 0.97093 0.97363 0.98436 1.21045 0.98141 0.95769 0.97408 0.92990 0.96270 0.96495 0.91377 0.92614 0.76786 0.76673 0.89045 0.87565 0.75247 0.75648 0.86585 0.86655 0.86699 0.86401 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.61 4.86 -27.88 -0.14 0.48 16 10 C -0.11 -2.13 4.67 -26.73 -0.12 -2.26 16 11 C 0.20 3.34 2.17 -69.08 -0.15 3.19 16 12 H 0.10 1.79 7.44 -51.93 -0.39 1.40 16 13 N -0.72 -10.87 3.76 -59.81 -0.23 -11.09 16 14 C 0.71 10.99 8.52 -86.92 -0.74 10.25 16 15 O -0.59 -11.02 16.01 5.28 0.08 -10.94 16 16 N -0.75 -8.77 5.55 -66.41 -0.37 -9.14 16 17 C 0.22 2.27 6.30 -5.19 -0.03 2.24 16 18 C 0.30 3.12 7.60 -155.73 -1.18 1.94 16 19 N -0.55 -7.01 11.21 -11.13 -0.12 -7.13 16 20 C 0.48 5.64 9.44 -321.18 -3.03 2.61 16 21 N -0.82 -6.81 9.13 30.00 0.27 -6.53 16 22 N -0.37 -4.25 12.82 29.99 0.38 -3.87 16 23 N -0.47 -4.34 7.43 32.61 0.24 -4.10 16 24 H 0.44 2.63 8.96 -182.35 -1.63 1.00 16 25 C -0.08 -1.18 4.91 -104.62 -0.51 -1.69 16 26 C -0.11 -1.44 9.33 -39.58 -0.37 -1.81 16 27 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 28 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 29 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 30 C -0.11 -1.51 9.67 -39.58 -0.38 -1.89 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16 33 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 5.34 8.62 -40.82 -0.35 4.99 16 37 H 0.40 4.18 8.48 -40.82 -0.35 3.83 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.42 2.91 8.96 -40.82 -0.37 2.55 16 41 H 0.41 2.48 8.96 -40.82 -0.37 2.11 16 42 H 0.12 1.42 7.71 -52.49 -0.40 1.02 16 43 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.11 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 46 H 0.12 1.68 8.04 -52.48 -0.42 1.26 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -35.73 398.08 -13.89 -49.62 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -7.60 Total: 12.29 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -8.27 Total: -5.75 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: 0.92 Total: -67.52 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.73 -13.89 -49.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471102592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.758 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds