Wall clock time and date at job start Wed Apr 1 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00233 * 2 1 4 4 H 1.48503 * 109.46826 * 269.99672 * 3 2 1 5 5 H 1.48496 * 109.47123 * 29.99373 * 3 2 1 6 6 H 1.48500 * 109.47330 * 150.00161 * 3 2 1 7 7 C 1.37884 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46876 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47528 * 304.99467 * 11 10 9 13 13 N 1.46499 * 109.47245 * 65.00039 * 11 10 9 14 14 C 1.34777 * 120.00065 * 204.99497 * 13 11 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 11 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 11 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.50700 * 109.46769 * 179.72341 * 17 16 14 19 19 N 1.30886 * 125.89310 * 275.01644 * 18 17 16 20 20 C 1.33654 * 109.77073 * 179.97438 * 19 18 17 21 21 N 1.39604 * 125.60997 * 180.02562 * 20 19 18 22 22 N 1.31200 * 108.77642 * 359.97438 * 20 19 18 23 23 N 1.34338 * 125.89425 * 94.71955 * 18 17 16 24 24 H 0.96994 * 126.76330 * 0.02887 * 23 18 17 25 25 C 1.50702 * 109.46759 * 184.99613 * 11 10 9 26 26 C 1.38232 * 120.00597 * 279.72762 * 25 11 10 27 27 C 1.38234 * 120.00575 * 179.80808 * 26 25 11 28 28 C 1.38237 * 119.99526 * 0.39946 * 27 26 25 29 29 C 1.38233 * 120.00310 * 359.85308 * 28 27 26 30 30 C 1.38234 * 119.99820 * 359.95812 * 29 28 27 31 31 H 0.96994 * 119.99886 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.47005 * 59.99521 * 9 7 2 33 33 H 1.09007 * 109.46968 * 299.99953 * 9 7 2 34 34 H 1.08996 * 109.47061 * 59.99803 * 10 9 7 35 35 H 1.09002 * 109.46565 * 299.99944 * 10 9 7 36 36 H 0.97000 * 120.00386 * 24.99866 * 13 11 10 37 37 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 38 38 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 39 39 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 40 40 H 0.97006 * 119.99875 * 0.02562 * 21 20 19 41 41 H 0.97000 * 120.00324 * 179.97438 * 21 20 19 42 42 H 1.08002 * 119.99608 * 359.97438 * 26 25 11 43 43 H 1.07997 * 120.00524 * 180.23184 * 27 26 25 44 44 H 1.07998 * 119.99922 * 179.83089 * 28 27 26 45 45 H 1.08002 * 120.00625 * 179.97438 * 29 28 27 46 46 H 1.08007 * 120.00096 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0018 11 6 1.4802 -4.9871 0.0012 12 1 0.7872 -5.0070 0.8422 13 7 0.7318 -5.1183 -1.2514 14 6 -0.3697 -5.8933 -1.3003 15 8 -0.7427 -6.4832 -0.3046 16 7 -1.0579 -6.0144 -2.4528 17 6 -2.2587 -6.8520 -2.5043 18 6 -2.8396 -6.8122 -3.8943 19 7 -3.6591 -5.9030 -4.3578 20 6 -3.9702 -6.1800 -5.6278 21 7 -4.8193 -5.4258 -6.4397 22 7 -3.3455 -7.2766 -5.9861 23 7 -2.6011 -7.7007 -4.8733 24 1 -2.0289 -8.4821 -4.8213 25 6 2.4546 -6.1299 0.1262 26 6 3.1454 -6.5741 -0.9857 27 6 4.0422 -7.6197 -0.8702 28 6 4.2421 -8.2265 0.3556 29 6 3.5475 -7.7858 1.4665 30 6 2.6536 -6.7377 1.3518 31 1 -0.4850 0.8400 -0.0004 32 1 0.6247 -2.5571 -0.8896 33 1 0.6240 -2.5567 0.8904 34 1 2.8712 -3.6040 0.8922 35 1 2.8726 -3.6048 -0.8878 36 1 1.0292 -4.6475 -2.0457 37 1 -0.7605 -5.5435 -3.2470 38 1 -1.9967 -7.8788 -2.2493 39 1 -2.9940 -6.4771 -1.7925 40 1 -5.2394 -4.6244 -6.0900 41 1 -4.9886 -5.7027 -7.3538 42 1 2.9864 -6.1024 -1.9442 43 1 4.5847 -7.9642 -1.7382 44 1 4.9407 -9.0452 0.4453 45 1 3.7033 -8.2602 2.4242 46 1 2.1105 -6.3936 2.2197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001471102592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:46 Heat of formation + Delta-G solvation = 57.759812 kcal Electronic energy + Delta-G solvation = -28998.897516 eV Core-core repulsion = 24924.045187 eV Total energy + Delta-G solvation = -4074.852329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.15814 -41.30776 -39.91418 -37.34378 -36.33209 -35.35573 -35.10764 -33.24718 -32.80700 -31.84056 -31.67911 -31.20104 -28.50064 -27.49309 -25.23792 -23.49334 -23.10589 -22.59505 -22.26190 -21.93360 -21.28263 -19.78019 -19.06044 -18.50485 -17.99679 -17.45018 -17.21987 -16.77844 -16.64939 -16.56384 -16.40256 -15.92314 -15.82728 -15.50057 -15.14122 -14.68914 -14.53648 -14.46563 -14.17434 -14.11489 -13.80929 -13.68262 -13.34449 -12.96277 -12.84409 -12.51942 -12.45792 -12.39885 -12.10285 -11.86912 -11.74383 -11.39790 -11.38192 -11.17666 -11.11393 -10.99740 -10.52796 -10.39300 -9.85582 -9.71763 -9.51584 -9.36706 -8.16213 -6.27179 0.37530 0.52780 0.59500 1.41700 1.42792 1.48736 1.53605 1.69792 2.08236 2.19032 2.34907 2.42970 2.96406 3.17269 3.29782 3.34238 3.66706 3.87907 4.03648 4.21688 4.28393 4.35448 4.36144 4.41592 4.51547 4.70859 4.71956 4.82072 4.87863 5.02947 5.14540 5.16980 5.23066 5.23839 5.28738 5.48532 5.54919 5.65610 5.68628 5.72964 5.80478 5.89052 5.98226 6.05730 6.20282 6.27438 6.36012 6.49121 6.90221 7.03002 7.35151 7.42135 7.57260 8.94765 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006135 B = 0.003403 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4562.866129 B = 8226.751543 C =12036.588737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.033 3.967 10 C -0.095 4.095 11 C 0.213 3.787 12 H 0.064 0.936 13 N -0.720 5.720 14 C 0.711 3.289 15 O -0.624 6.624 16 N -0.732 5.732 17 C 0.226 3.774 18 C 0.301 3.699 19 N -0.580 5.580 20 C 0.462 3.538 21 N -0.812 5.812 22 N -0.381 5.381 23 N -0.455 5.455 24 H 0.457 0.543 25 C -0.097 4.097 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.128 4.128 29 C -0.125 4.125 30 C -0.127 4.127 31 H 0.261 0.739 32 H 0.003 0.997 33 H -0.020 1.020 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.406 0.594 37 H 0.408 0.592 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.422 0.578 41 H 0.423 0.577 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -19.024 -10.186 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.578 4.578 8 H 0.080 0.920 9 C -0.004 4.004 10 C -0.133 4.133 11 C 0.108 3.892 12 H 0.082 0.918 13 N -0.373 5.373 14 C 0.411 3.589 15 O -0.504 6.504 16 N -0.389 5.389 17 C 0.099 3.901 18 C 0.021 3.979 19 N -0.317 5.317 20 C 0.090 3.910 21 N -0.371 5.371 22 N -0.222 5.222 23 N -0.176 5.176 24 H 0.306 0.694 25 C -0.098 4.098 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.146 4.146 29 C -0.143 4.143 30 C -0.146 4.146 31 H 0.070 0.930 32 H 0.022 0.978 33 H -0.002 1.002 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.243 0.757 38 H 0.133 0.867 39 H 0.111 0.889 40 H 0.254 0.746 41 H 0.256 0.744 42 H 0.144 0.856 43 H 0.161 0.839 44 H 0.164 0.836 45 H 0.158 0.842 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.028 -19.480 -9.770 21.792 hybrid contribution 0.196 1.456 -0.554 1.570 sum 0.168 -18.024 -10.324 20.772 Atomic orbital electron populations 1.70110 1.07757 1.27544 1.51746 1.25922 0.95626 1.03146 0.94922 0.85526 0.78697 0.78845 0.78451 1.19722 1.21221 1.18788 1.21689 0.93545 0.92269 1.50269 0.92039 1.18929 0.94015 0.92459 0.95018 1.21713 0.97898 0.91474 1.02192 1.19594 0.90915 0.92738 0.85990 0.91790 1.44977 1.27642 1.50547 1.14167 1.15848 0.80099 0.79792 0.83148 1.90894 1.71335 1.52772 1.35426 1.44722 1.28672 1.53577 1.11968 1.19464 0.86347 0.97626 0.86661 1.23857 0.93780 0.86902 0.93401 1.70247 1.21357 1.29609 1.10460 1.20827 0.92428 0.89783 0.87965 1.41045 1.51415 1.30041 1.14641 1.78131 1.18969 1.17217 1.07888 1.47538 1.38114 1.24704 1.07273 0.69430 1.20273 0.97741 0.97086 0.94696 1.21057 0.96521 0.97596 0.98074 1.21419 0.98150 0.96061 0.98692 1.21463 0.99967 1.00552 0.92577 1.21372 0.96341 0.96581 1.00018 1.21185 0.99264 0.97027 0.97126 0.92989 0.97829 1.00175 0.91636 0.91157 0.75817 0.75705 0.86682 0.88854 0.74615 0.74438 0.85641 0.83852 0.83614 0.84213 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.54 -29.80 9.11 25.60 0.23 -29.57 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.67 4.86 29.85 0.15 1.81 16 10 C -0.09 -3.66 4.67 30.59 0.14 -3.52 16 11 C 0.21 7.36 2.17 44.25 0.10 7.46 16 12 H 0.06 2.59 7.44 -2.39 -0.02 2.58 16 13 N -0.72 -22.08 3.76 -461.41 -1.74 -23.82 16 14 C 0.71 22.29 8.52 179.05 1.53 23.82 16 15 O -0.62 -24.05 16.01 -4.01 -0.06 -24.11 16 16 N -0.73 -17.03 5.55 -482.30 -2.68 -19.71 16 17 C 0.23 4.53 6.30 85.63 0.54 5.07 16 18 C 0.30 6.15 7.60 138.24 1.05 7.20 16 19 N -0.58 -14.68 11.21 -189.12 -2.12 -16.80 16 20 C 0.46 10.65 9.44 260.92 2.46 13.12 16 21 N -0.81 -12.88 9.13 -59.01 -0.54 -13.42 16 22 N -0.38 -8.46 12.82 -59.03 -0.76 -9.22 16 23 N -0.45 -7.79 7.43 -50.73 -0.38 -8.17 16 24 H 0.46 4.62 8.96 -213.11 -1.91 2.71 16 25 C -0.10 -2.90 4.91 -19.86 -0.10 -3.00 16 26 C -0.11 -2.89 9.33 22.27 0.21 -2.68 16 27 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 28 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 29 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 30 C -0.13 -3.66 9.67 22.27 0.22 -3.45 16 31 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 33 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 34 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.41 10.93 8.62 -92.71 -0.80 10.13 16 37 H 0.41 8.28 8.48 -92.71 -0.79 7.50 16 38 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.42 5.69 8.96 -92.70 -0.83 4.86 16 41 H 0.42 4.71 8.96 -92.71 -0.83 3.87 16 42 H 0.13 2.84 7.71 -2.91 -0.02 2.82 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 46 H 0.12 3.33 8.04 -2.91 -0.02 3.31 16 Total: -1.00 -78.32 398.08 -2.38 -80.70 By element: Atomic # 1 Polarization: 39.64 SS G_CDS: -4.08 Total: 35.56 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 7.65 Total: 9.36 kcal Atomic # 7 Polarization: -139.39 SS G_CDS: -7.92 Total: -147.31 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.06 Total: -24.11 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.32 -2.38 -80.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471102592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.459 kcal (2) G-P(sol) polarization free energy of solvation -78.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds