Wall clock time and date at job start Wed Apr 1 2020 04:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99583 * 2 1 4 4 O 1.21284 * 120.00192 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99975 * 179.97438 * 3 2 1 6 6 N 1.46910 * 109.46852 * 180.02562 * 5 3 2 7 7 C 1.46955 * 110.99411 * 170.00097 * 6 5 3 8 8 C 1.53057 * 109.36232 * 183.18628 * 7 6 5 9 9 N 1.46961 * 109.36367 * 301.59692 * 8 7 6 10 10 C 1.46896 * 111.00124 * 183.18417 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00033 * 10 9 8 12 12 N 1.46498 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 C 1.46956 * 110.87704 * 59.32174 * 9 8 7 26 26 C 1.46954 * 110.99727 * 293.79645 * 6 5 3 27 27 H 1.09003 * 109.47273 * 299.99482 * 1 2 3 28 28 H 1.08995 * 109.47179 * 60.00045 * 1 2 3 29 29 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00573 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47388 * 60.00374 * 5 3 2 32 32 H 1.09001 * 109.47091 * 299.99673 * 5 3 2 33 33 H 1.08999 * 109.49196 * 63.22061 * 7 6 5 34 34 H 1.08994 * 109.49111 * 303.15020 * 7 6 5 35 35 H 1.09000 * 109.48760 * 181.62993 * 8 7 6 36 36 H 1.09000 * 109.48934 * 61.56341 * 8 7 6 37 37 H 1.09004 * 109.46774 * 50.00232 * 10 9 8 38 38 H 1.09000 * 109.47249 * 290.00858 * 10 9 8 39 39 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 40 40 H 1.08994 * 109.46974 * 300.00526 * 11 10 9 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.49195 * 60.64478 * 25 9 8 46 46 H 1.08994 * 109.48776 * 180.71314 * 25 9 8 47 47 H 1.09001 * 109.49355 * 296.77877 * 26 6 5 48 48 H 1.09000 * 109.49145 * 56.85109 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5525 0.0011 7 6 5.5847 2.5986 0.2399 8 6 6.0409 4.0578 0.3120 9 7 5.6949 4.7391 -0.9434 10 6 6.1844 6.1241 -0.9429 11 6 6.0306 6.7199 -2.3437 12 7 6.5193 8.1009 -2.3433 13 6 6.4871 8.8274 -3.4781 14 8 6.0488 8.3396 -4.4983 15 6 6.9956 10.2461 -3.4793 16 16 6.8190 10.9490 -5.1378 17 6 7.4693 12.5623 -4.8572 18 1 7.8226 12.8388 -3.8748 19 6 7.5286 13.4775 -5.8991 20 7 7.0986 13.1404 -7.0966 21 14 8.2175 15.1882 -5.6015 22 1 9.6241 15.0815 -5.1372 23 1 8.1704 15.9675 -6.8647 24 1 7.4052 15.8757 -4.5658 25 6 4.2456 4.6929 -1.1821 26 6 3.7894 3.2337 -1.2542 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.9501 -0.8399 -0.0004 31 1 4.0096 0.6534 -0.8891 32 1 4.0088 0.6538 0.8909 33 1 6.1038 2.0952 -0.5757 34 1 5.8143 2.0989 1.1809 35 1 7.1201 4.0945 0.4602 36 1 5.5421 4.5540 1.1445 37 1 7.2359 6.1377 -0.6557 38 1 5.6059 6.7137 -0.2317 39 1 4.9791 6.7063 -2.6308 40 1 6.6090 6.1303 -3.0548 41 1 6.8701 8.4911 -1.5275 42 1 6.4185 10.8395 -2.7702 43 1 8.0466 10.2555 -3.1902 44 1 7.1397 13.7801 -7.8245 45 1 3.7264 5.1963 -0.3666 46 1 4.0160 5.1926 -2.1232 47 1 4.2882 2.7375 -2.0868 48 1 2.7101 3.1970 -1.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479927152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:38 Heat of formation + Delta-G solvation = -51.131346 kcal Electronic energy + Delta-G solvation = -26868.945984 eV Core-core repulsion = 22892.522980 eV Total energy + Delta-G solvation = -3976.423004 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.47372 -39.40895 -38.84050 -36.24651 -35.00245 -34.18885 -32.40060 -31.31969 -30.83080 -29.52495 -27.98665 -26.34506 -25.43670 -24.36475 -23.94082 -21.87950 -20.95820 -20.41238 -20.05605 -17.82090 -17.72489 -17.02355 -16.32457 -16.25177 -16.09025 -15.69594 -15.59157 -15.17772 -15.00136 -14.86860 -14.77778 -14.44885 -14.30356 -13.86557 -13.63643 -13.61003 -13.31364 -13.04939 -12.76888 -12.53356 -12.40567 -12.39501 -12.04218 -11.90021 -11.57234 -11.43344 -11.25128 -11.01953 -11.01644 -10.94658 -10.74162 -10.16481 -9.79733 -9.61042 -9.37169 -9.03576 -8.82247 -8.81184 -8.60278 -8.20581 -6.46805 -6.18702 -3.89189 2.21620 2.59457 2.98782 3.15273 3.25652 3.27629 3.31091 3.50709 3.55510 3.97421 4.23299 4.25612 4.47121 4.58281 4.66148 4.73751 4.76451 4.83590 4.88936 5.02194 5.05389 5.06564 5.14554 5.16246 5.21204 5.23706 5.32073 5.35140 5.44073 5.56944 5.64366 5.70173 5.73932 5.85397 5.91213 5.94697 5.99260 6.17433 6.40435 6.54276 6.61833 6.77205 6.79641 6.99279 7.61920 7.74990 7.80356 8.37775 8.66409 9.26339 10.88692 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.001479 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.964988 B =18926.962319 C =19536.755218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.510 3.490 4 O -0.516 6.516 5 C 0.037 3.963 6 N -0.524 5.524 7 C 0.059 3.941 8 C 0.059 3.941 9 N -0.537 5.537 10 C 0.047 3.953 11 C 0.124 3.876 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.517 6.517 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.054 3.946 26 C 0.054 3.946 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.401 0.599 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.040 0.960 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -30.058 20.141 36.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.391 6.391 5 C -0.095 4.095 6 N -0.249 5.249 7 C -0.069 4.069 8 C -0.069 4.069 9 N -0.262 5.262 10 C -0.081 4.081 11 C 0.000 4.000 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.391 6.391 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.200 1.200 25 C -0.074 4.074 26 C -0.074 4.074 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.058 0.942 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.490 -30.039 18.230 35.927 hybrid contribution 1.319 1.320 1.833 2.616 sum -6.171 -28.719 20.063 35.573 Atomic orbital electron populations 1.21526 0.79390 1.02197 1.02480 1.45808 1.07901 1.08689 1.76975 1.20626 0.90029 0.83704 0.76053 1.90714 1.70025 1.30975 1.47342 1.21931 0.92327 0.91925 1.03271 1.61858 1.13732 1.13057 1.36280 1.22190 0.86748 0.96855 1.01154 1.22128 1.00561 0.93618 0.90587 1.62058 1.14530 1.15211 1.34441 1.22218 1.00962 0.88355 0.96607 1.21188 1.00242 0.82147 0.96441 1.45916 1.66946 1.13822 1.12754 1.20285 0.77803 0.87409 0.82688 1.90706 1.44493 1.71924 1.31952 1.23529 1.03771 0.94808 1.08257 1.85403 1.82813 1.12274 1.02837 1.22837 1.48143 0.98478 0.99013 0.90984 1.24988 0.95102 0.99022 0.94425 1.70010 1.43844 1.35677 1.00771 0.86227 0.79397 0.82163 0.77722 1.19948 1.20815 1.19956 1.22242 0.86822 0.96349 1.01944 1.22353 1.02224 0.93831 0.88994 0.92182 0.92160 0.90679 0.76590 0.91678 0.87798 0.93607 0.90133 0.89957 0.93728 0.90045 0.93976 0.91650 0.90800 0.76956 0.89238 0.89211 0.92143 0.93532 0.89536 0.94205 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.70 59.85 0.64 1.02 16 2 N -0.74 -3.39 5.71 -67.07 -0.38 -3.77 16 3 C 0.51 3.98 7.53 -10.99 -0.08 3.90 16 4 O -0.52 -6.37 14.34 5.55 0.08 -6.29 16 5 C 0.04 0.21 5.45 -4.97 -0.03 0.18 16 6 N -0.52 -4.37 4.45 -235.90 -1.05 -5.42 16 7 C 0.06 0.39 5.61 -3.76 -0.02 0.37 16 8 C 0.06 0.45 5.61 -3.76 -0.02 0.43 16 9 N -0.54 -5.10 4.71 -234.46 -1.10 -6.20 16 10 C 0.05 0.44 5.07 -3.83 -0.02 0.42 16 11 C 0.12 1.56 5.61 -4.04 -0.02 1.54 16 12 N -0.74 -10.22 5.56 -60.30 -0.33 -10.55 16 13 C 0.53 10.25 7.85 -10.98 -0.09 10.16 16 14 O -0.52 -12.15 15.86 5.55 0.09 -12.06 16 15 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 17 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 20 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 21 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.05 0.56 5.41 -3.76 -0.02 0.54 16 26 C 0.05 0.52 5.26 -3.77 -0.02 0.50 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.40 0.51 8.83 -40.82 -0.36 0.15 16 31 H 0.07 0.28 8.12 -51.93 -0.42 -0.14 16 32 H 0.10 0.35 8.03 -51.93 -0.42 -0.06 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.39 8.07 -51.93 -0.42 -0.02 16 35 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.67 8.03 -51.93 -0.42 0.25 16 38 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.90 6.49 -51.93 -0.34 0.56 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.20 8.47 -40.82 -0.35 3.86 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.94 6.34 -51.93 -0.33 0.61 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.10 1.09 5.85 -51.93 -0.30 0.79 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -38.29 402.49 -10.36 -48.65 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.96 Total: -0.43 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 0.74 Total: 3.01 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: -2.14 Total: -51.65 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -38.29 -10.36 -48.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479927152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.479 kcal (2) G-P(sol) polarization free energy of solvation -38.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds