Wall clock time and date at job start Wed Apr 1 2020 04:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34774 * 119.99583 * 2 1 4 4 O 1.21284 * 120.00192 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99975 * 179.97438 * 3 2 1 6 6 N 1.46910 * 109.46852 * 180.02562 * 5 3 2 7 7 C 1.46955 * 110.99411 * 170.00097 * 6 5 3 8 8 C 1.53057 * 109.36232 * 183.18628 * 7 6 5 9 9 N 1.46961 * 109.36367 * 301.59692 * 8 7 6 10 10 C 1.46896 * 111.00124 * 183.18417 * 9 8 7 11 11 C 1.52996 * 109.47256 * 170.00033 * 10 9 8 12 12 N 1.46498 * 109.47059 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 S 1.81000 * 109.47389 * 180.02562 * 15 13 12 17 17 C 1.76198 * 99.99715 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00516 * 0.02562 * 17 16 15 19 19 C 1.38803 * 119.99710 * 179.97438 * 17 16 15 20 20 N 1.31634 * 120.00163 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00011 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46661 * 60.00586 * 21 19 17 23 23 H 1.48501 * 109.47391 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47355 * 300.00441 * 21 19 17 25 25 C 1.46956 * 110.87704 * 59.32174 * 9 8 7 26 26 C 1.46954 * 110.99727 * 293.79645 * 6 5 3 27 27 H 1.09003 * 109.47273 * 299.99482 * 1 2 3 28 28 H 1.08995 * 109.47179 * 60.00045 * 1 2 3 29 29 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 30 30 H 0.96994 * 120.00573 * 180.02562 * 2 1 3 31 31 H 1.08995 * 109.47388 * 60.00374 * 5 3 2 32 32 H 1.09001 * 109.47091 * 299.99673 * 5 3 2 33 33 H 1.08999 * 109.49196 * 63.22061 * 7 6 5 34 34 H 1.08994 * 109.49111 * 303.15020 * 7 6 5 35 35 H 1.09000 * 109.48760 * 181.62993 * 8 7 6 36 36 H 1.09000 * 109.48934 * 61.56341 * 8 7 6 37 37 H 1.09004 * 109.46774 * 50.00232 * 10 9 8 38 38 H 1.09000 * 109.47249 * 290.00858 * 10 9 8 39 39 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 40 40 H 1.08994 * 109.46974 * 300.00526 * 11 10 9 41 41 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 42 42 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 43 43 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 44 44 H 0.96991 * 119.99795 * 179.97438 * 20 19 17 45 45 H 1.08999 * 109.49195 * 60.64478 * 25 9 8 46 46 H 1.08994 * 109.48776 * 180.71314 * 25 9 8 47 47 H 1.09001 * 109.49355 * 296.77877 * 26 6 5 48 48 H 1.09000 * 109.49145 * 56.85109 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 0.0006 6 7 4.1354 2.5525 0.0011 7 6 5.5847 2.5986 0.2399 8 6 6.0409 4.0578 0.3120 9 7 5.6949 4.7391 -0.9434 10 6 6.1844 6.1241 -0.9429 11 6 6.0306 6.7199 -2.3437 12 7 6.5193 8.1009 -2.3433 13 6 6.4871 8.8274 -3.4781 14 8 6.0488 8.3396 -4.4983 15 6 6.9956 10.2461 -3.4793 16 16 6.8190 10.9490 -5.1378 17 6 7.4693 12.5623 -4.8572 18 1 7.8226 12.8388 -3.8748 19 6 7.5286 13.4775 -5.8991 20 7 7.0986 13.1404 -7.0966 21 14 8.2175 15.1882 -5.6015 22 1 9.6241 15.0815 -5.1372 23 1 8.1704 15.9675 -6.8647 24 1 7.4052 15.8757 -4.5658 25 6 4.2456 4.6929 -1.1821 26 6 3.7894 3.2337 -1.2542 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.9501 -0.8399 -0.0004 31 1 4.0096 0.6534 -0.8891 32 1 4.0088 0.6538 0.8909 33 1 6.1038 2.0952 -0.5757 34 1 5.8143 2.0989 1.1809 35 1 7.1201 4.0945 0.4602 36 1 5.5421 4.5540 1.1445 37 1 7.2359 6.1377 -0.6557 38 1 5.6059 6.7137 -0.2317 39 1 4.9791 6.7063 -2.6308 40 1 6.6090 6.1303 -3.0548 41 1 6.8701 8.4911 -1.5275 42 1 6.4185 10.8395 -2.7702 43 1 8.0466 10.2555 -3.1902 44 1 7.1397 13.7801 -7.8245 45 1 3.7264 5.1963 -0.3666 46 1 4.0160 5.1926 -2.1232 47 1 4.2882 2.7375 -2.0868 48 1 2.7101 3.1970 -1.4024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479927152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:37 Heat of formation + Delta-G solvation = -84.567134 kcal Electronic energy + Delta-G solvation = -26870.395869 eV Core-core repulsion = 22892.522980 eV Total energy + Delta-G solvation = -3977.872889 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10214 -40.64375 -39.76153 -37.08120 -35.58675 -35.33303 -34.57675 -32.10365 -31.80659 -30.59653 -28.87993 -27.67262 -26.96420 -25.06070 -24.60913 -22.75422 -21.84337 -21.49160 -20.78649 -19.82861 -18.24736 -17.95701 -17.55387 -17.20599 -16.97324 -16.87087 -16.61758 -16.47747 -16.05018 -15.81494 -15.69911 -15.56577 -15.29603 -14.95632 -14.73172 -14.60457 -14.26554 -14.15041 -13.97744 -13.55521 -13.16521 -13.11129 -13.05950 -12.92148 -12.86072 -12.78053 -12.60523 -12.33098 -12.24667 -11.94789 -11.77227 -11.68648 -11.12168 -11.00173 -10.80473 -10.27546 -10.13454 -10.10679 -9.47176 -9.26870 -8.66625 -8.33720 -6.12334 1.26599 1.44764 1.46873 1.56712 1.60231 1.65777 2.15269 2.18065 2.28505 2.95513 3.00301 3.00355 3.34125 3.76261 3.81141 3.90118 3.98884 4.04198 4.15579 4.20843 4.30358 4.33733 4.37081 4.42623 4.47462 4.50271 4.51244 4.54933 4.58597 4.62666 4.83636 4.86179 4.89829 4.92645 4.95105 5.01448 5.07801 5.38279 5.42228 5.47286 5.82065 5.88674 6.06730 6.10557 6.20318 6.49535 6.61389 7.07235 7.23568 7.32616 8.75349 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.028249 B = 0.001479 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.964988 B =18926.962319 C =19536.755218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.726 5.726 3 C 0.503 3.497 4 O -0.572 6.572 5 C 0.039 3.961 6 N -0.541 5.541 7 C 0.060 3.940 8 C 0.057 3.943 9 N -0.543 5.543 10 C 0.058 3.942 11 C 0.128 3.872 12 N -0.711 5.711 13 C 0.533 3.467 14 O -0.567 6.567 15 C -0.128 4.128 16 S -0.154 6.154 17 C -0.548 4.548 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.279 1.279 24 H -0.262 1.262 25 C 0.058 3.942 26 C 0.063 3.937 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.110 0.890 30 H 0.420 0.580 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.048 0.952 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.038 0.962 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.060 0.940 41 H 0.418 0.582 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.271 0.729 45 H 0.032 0.968 46 H 0.072 0.928 47 H 0.038 0.962 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.494 -31.068 23.031 38.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.379 5.379 3 C 0.289 3.711 4 O -0.450 6.450 5 C -0.091 4.091 6 N -0.266 5.266 7 C -0.067 4.067 8 C -0.070 4.070 9 N -0.268 5.268 10 C -0.070 4.070 11 C 0.003 3.997 12 N -0.366 5.366 13 C 0.319 3.681 14 O -0.446 6.446 15 C -0.279 4.279 16 S 0.073 5.927 17 C -0.696 4.696 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.186 1.186 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.070 4.070 26 C -0.066 4.066 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.256 0.744 31 H 0.102 0.898 32 H 0.152 0.848 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.122 0.878 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.255 0.745 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.703 -31.126 21.196 38.087 hybrid contribution 0.722 1.466 1.025 1.929 sum -4.981 -29.661 22.221 37.394 Atomic orbital electron populations 1.21597 0.79273 1.04005 1.01011 1.45738 1.08127 1.08798 1.75274 1.21137 0.91103 0.83625 0.75185 1.90696 1.71173 1.33002 1.50144 1.22037 0.90667 0.90914 1.05495 1.61815 1.14953 1.14698 1.35177 1.22262 0.85572 0.96393 1.02473 1.22256 1.01692 0.93946 0.89138 1.62060 1.13567 1.15279 1.35918 1.22120 1.02395 0.88365 0.94151 1.21219 0.98941 0.81013 0.98504 1.45610 1.65139 1.13923 1.11903 1.20100 0.77499 0.87180 0.83321 1.90697 1.47016 1.72725 1.34114 1.23363 1.05699 0.95418 1.03452 1.85610 1.83448 1.13844 1.09763 1.23186 1.48131 0.98526 0.99719 0.89803 1.26140 0.95160 1.03885 0.93927 1.70183 1.45259 1.37414 1.01959 0.84994 0.79062 0.75959 0.77908 1.18553 1.20410 1.18691 1.22124 0.87583 0.96676 1.00615 1.22128 1.00806 0.93655 0.89970 0.93551 0.93819 0.87176 0.74377 0.89834 0.84775 0.93404 0.87603 0.87985 0.94349 0.87836 0.93268 0.93190 0.92147 0.74520 0.87129 0.86898 0.91999 0.94943 0.91002 0.94410 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 127.77 1.37 2.06 16 2 N -0.73 -5.74 5.71 -484.51 -2.77 -8.51 16 3 C 0.50 7.61 7.53 87.66 0.66 8.27 16 4 O -0.57 -14.76 14.34 -3.04 -0.04 -14.80 16 5 C 0.04 0.37 5.45 85.56 0.47 0.84 16 6 N -0.54 -8.36 4.45 -900.25 -4.00 -12.37 16 7 C 0.06 0.66 5.61 86.31 0.48 1.14 16 8 C 0.06 0.74 5.61 86.31 0.48 1.23 16 9 N -0.54 -9.63 4.71 -895.70 -4.22 -13.85 16 10 C 0.06 0.97 5.07 86.30 0.44 1.41 16 11 C 0.13 3.12 5.61 86.38 0.48 3.60 16 12 N -0.71 -18.56 5.56 -463.07 -2.57 -21.13 16 13 C 0.53 20.35 7.85 87.66 0.69 21.04 16 14 O -0.57 -27.44 15.86 -3.04 -0.05 -27.49 16 15 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 16 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 17 C -0.55 -31.62 9.50 67.96 0.65 -30.97 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.78 5.49 84.86 0.47 1.25 16 20 N -0.91 -56.68 13.22 21.65 0.29 -56.39 16 21 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 C 0.06 1.23 5.41 86.31 0.47 1.70 16 26 C 0.06 1.24 5.26 86.31 0.45 1.70 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.42 0.07 8.83 -92.71 -0.82 -0.75 16 31 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.13 0.45 8.03 -2.39 -0.02 0.43 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.11 0.63 8.07 -2.39 -0.02 0.61 16 35 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 36 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 1.33 8.03 -2.38 -0.02 1.32 16 38 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 39 H 0.05 1.41 6.49 -2.38 -0.02 1.40 16 40 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.42 7.59 8.47 -92.71 -0.79 6.81 16 42 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.27 15.66 8.31 -92.72 -0.77 14.89 16 45 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.07 1.68 6.34 -2.39 -0.02 1.66 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.08 1.84 5.85 -2.39 -0.01 1.83 16 Total: -1.00 -87.93 402.49 -5.59 -93.52 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -0.63 Total: 16.42 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 7.54 Total: 8.54 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -13.28 Total: -112.25 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -0.09 Total: -42.29 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -87.93 -5.59 -93.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479927152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.952 kcal (2) G-P(sol) polarization free energy of solvation -87.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds