Wall clock time and date at job start Wed Apr 1 2020 04:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21678 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.46818 * 119.99850 * 180.02562 * 16 15 14 19 19 C 1.40415 * 126.54259 * 359.68714 * 18 16 15 20 20 N 1.30969 * 108.76542 * 179.81500 * 19 18 16 21 21 N 1.39704 * 109.48635 * 0.45680 * 20 19 18 22 22 C 1.36362 * 133.18943 * 179.73733 * 21 20 19 23 23 C 1.35291 * 119.81082 * 180.02562 * 22 21 20 24 24 N 1.33251 * 121.26925 * 359.94920 * 23 22 21 25 25 C 1.31413 * 121.07977 * 0.02720 * 24 23 22 26 26 C 1.36818 * 107.97551 * 359.71075 * 21 20 19 27 27 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 28 28 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 31 31 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 32 32 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 33 33 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 34 34 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 35 35 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 36 36 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 37 37 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 38 38 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 39 39 H 1.08007 * 125.61208 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.09113 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.36752 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.17815 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.49472 * 303.13919 * 27 12 11 44 44 H 1.09000 * 109.49394 * 183.06639 * 27 12 11 45 45 H 1.09005 * 109.63035 * 350.91919 * 28 9 7 46 46 H 1.08997 * 109.62936 * 111.49710 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2985 -9.4981 -1.8427 18 6 1.9892 -10.2819 -4.0135 19 6 1.5919 -10.1458 -5.3534 20 7 1.8038 -11.2801 -5.9729 21 7 2.3355 -12.2092 -5.0753 22 6 2.7233 -13.5106 -5.1994 23 6 3.2134 -14.1717 -4.1257 24 7 3.3282 -13.5756 -2.9395 25 6 2.9678 -12.3229 -2.7722 26 6 2.4542 -11.5987 -3.8566 27 6 2.0031 -4.6196 -1.0146 28 6 1.8311 -3.6609 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.0842 -1.3450 -1.6646 31 1 -0.6925 -2.6164 -0.6875 32 1 -0.4579 -3.4326 -2.9816 33 1 1.2741 -3.0200 -2.9888 34 1 -0.1815 -5.8898 -3.2160 35 1 1.4638 -5.3601 -3.6412 36 1 2.3908 -6.7992 -1.8472 37 1 0.7456 -7.3290 -1.4221 38 1 1.1555 -7.8213 -4.1725 39 1 1.1818 -9.2521 -5.8001 40 1 2.6392 -14.0121 -6.1523 41 1 3.5180 -15.2024 -4.2320 42 1 3.0675 -11.8540 -1.8045 43 1 2.8147 -4.2687 -1.6521 44 1 2.2374 -5.6172 -0.6432 45 1 2.7856 -3.5347 0.6793 46 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479931490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:15 Heat of formation + Delta-G solvation = 128.728302 kcal Electronic energy + Delta-G solvation = -28804.425763 eV Core-core repulsion = 24732.650858 eV Total energy + Delta-G solvation = -4071.774905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.03271 -39.76648 -38.75313 -38.18995 -35.46340 -34.21888 -33.92559 -31.89577 -31.42670 -30.47462 -29.85697 -28.46581 -26.09571 -25.36430 -24.32091 -23.46478 -23.07221 -22.41922 -21.20761 -20.65947 -19.13690 -18.93385 -17.96502 -17.23327 -16.85524 -16.66628 -16.27510 -15.75608 -15.58440 -15.53803 -14.98161 -14.48465 -14.39680 -14.22124 -13.96592 -13.74167 -13.59499 -13.48540 -13.44342 -13.29576 -12.94960 -12.47514 -11.79394 -11.66191 -11.47811 -11.38341 -11.29804 -11.02271 -10.72913 -10.54630 -10.46098 -10.41779 -10.29999 -10.17816 -10.03878 -9.73258 -9.61253 -9.19788 -8.49750 -8.44046 -7.86778 -6.65674 -5.77011 -3.18013 -0.17111 0.25067 1.32440 1.57333 2.70056 2.90744 3.19998 3.38524 3.45505 3.46840 3.50157 3.63521 3.68990 4.17580 4.36933 4.41184 4.46308 4.52058 4.74884 4.82683 4.87004 5.03110 5.13716 5.40046 5.43785 5.51005 5.56210 5.62632 5.83090 5.85684 5.90884 5.93333 6.02476 6.14653 6.23171 6.25148 6.35905 6.53833 6.67048 6.69832 6.95236 7.02776 7.23719 7.31265 7.54757 7.63232 7.69627 7.82324 8.05605 8.44691 9.22602 9.85957 10.44396 11.31873 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.001712 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.987080 B =16350.846325 C =16766.800869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.177 3.823 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.044 3.956 14 C 0.118 3.882 15 N -0.723 5.723 16 C 0.596 3.404 17 O -0.543 6.543 18 C -0.273 4.273 19 C 0.115 3.885 20 N -0.302 5.302 21 N -0.248 5.248 22 C 0.063 3.937 23 C 0.030 3.970 24 N -0.443 5.443 25 C 0.169 3.831 26 C 0.095 3.905 27 C 0.034 3.966 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.397 0.603 39 H 0.205 0.795 40 H 0.183 0.817 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.028 0.972 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 -26.825 -13.886 30.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.085 4.085 14 C -0.006 4.006 15 N -0.374 5.374 16 C 0.384 3.616 17 O -0.421 6.421 18 C -0.291 4.291 19 C -0.064 4.064 20 N -0.125 5.125 21 N -0.015 5.015 22 C -0.066 4.066 23 C -0.112 4.112 24 N -0.154 5.154 25 C -0.010 4.010 26 C -0.028 4.028 27 C -0.095 4.095 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.231 0.769 39 H 0.222 0.778 40 H 0.200 0.800 41 H 0.205 0.795 42 H 0.215 0.785 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.212 -28.118 -13.352 31.293 hybrid contribution 0.548 2.056 -1.269 2.477 sum 3.760 -26.062 -14.621 30.119 Atomic orbital electron populations 1.70030 1.05178 1.25436 1.54198 1.25021 0.95320 0.98338 1.01112 0.86280 0.79106 0.83723 0.77612 1.21559 1.21753 1.20474 1.19217 0.92610 0.84777 1.41437 0.91600 1.44128 1.34097 1.01304 1.52361 1.20860 0.89060 0.96523 0.88421 1.22918 0.98675 0.88944 0.98693 1.62027 1.34447 1.05749 1.23079 1.22262 1.00495 0.91582 0.94188 1.21593 1.02307 0.86275 0.90378 1.45674 1.65891 1.11639 1.14178 1.16792 0.77204 0.81105 0.86548 1.90800 1.49032 1.80736 1.21528 1.19811 1.19310 0.94200 0.95786 1.24250 0.94054 0.96447 0.91665 1.77709 1.23168 0.98883 1.12760 1.46226 1.37843 1.09392 1.08059 1.22694 0.99317 0.81106 1.03505 1.22511 1.00081 1.01742 0.86875 1.68311 1.13415 1.09773 1.23933 1.23423 0.90803 0.88448 0.98298 1.20409 1.00430 0.93962 0.88031 1.22804 0.89651 0.99912 0.97147 1.20988 0.97862 0.86392 0.92618 0.93636 0.89302 0.95471 0.92052 0.95573 0.90607 0.94925 0.90672 0.90191 0.76920 0.77826 0.79976 0.79516 0.78475 0.95336 0.91156 0.92568 0.95526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.20 11.15 55.49 0.62 -25.58 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 3 Si 0.90 21.69 29.59 -169.99 -5.03 16.67 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.91 9.63 -15.06 -0.15 -7.05 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.60 -15.06 3.04 -172.02 -0.52 -15.59 16 10 C 0.18 4.24 5.42 -3.60 -0.02 4.22 16 11 C 0.04 0.69 5.58 -3.70 -0.02 0.67 16 12 N -0.53 -8.95 4.78 -234.33 -1.12 -10.07 16 13 C 0.04 0.55 5.38 -3.82 -0.02 0.53 16 14 C 0.12 1.40 4.93 -4.04 -0.02 1.38 16 15 N -0.72 -6.96 5.55 -61.58 -0.34 -7.30 16 16 C 0.60 6.84 7.79 -12.79 -0.10 6.74 16 17 O -0.54 -7.98 15.81 5.21 0.08 -7.89 16 18 C -0.27 -2.66 6.16 -104.75 -0.65 -3.31 16 19 C 0.11 0.88 11.44 -17.10 -0.20 0.68 16 20 N -0.30 -2.76 12.60 30.76 0.39 -2.37 16 21 N -0.25 -2.17 3.91 -10.50 -0.04 -2.21 16 22 C 0.06 0.34 11.24 -16.59 -0.19 0.16 16 23 C 0.03 0.16 11.07 -17.99 -0.20 -0.04 16 24 N -0.44 -3.68 10.44 -13.26 -0.14 -3.82 16 25 C 0.17 1.56 10.98 -17.01 -0.19 1.37 16 26 C 0.09 0.93 6.77 -84.06 -0.57 0.37 16 27 C 0.03 0.60 5.04 -3.70 -0.02 0.58 16 28 C 0.15 3.16 6.69 -3.61 -0.02 3.14 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.09 2.34 6.12 -51.93 -0.32 2.03 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.03 8.11 -51.93 -0.42 0.60 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.03 0.39 8.08 -51.93 -0.42 -0.02 16 36 H 0.08 0.99 6.18 -51.93 -0.32 0.67 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.40 2.57 7.39 -40.82 -0.30 2.26 16 39 H 0.21 0.73 7.46 -52.48 -0.39 0.34 16 40 H 0.18 0.37 8.06 -52.49 -0.42 -0.06 16 41 H 0.19 0.28 8.06 -52.49 -0.42 -0.14 16 42 H 0.20 1.78 7.20 -52.49 -0.38 1.41 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 1.09 5.73 -51.93 -0.30 0.79 16 45 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -34.98 376.62 -9.06 -44.03 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.19 Total: -0.89 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.44 Total: 9.36 kcal Atomic # 7 Polarization: -65.79 SS G_CDS: -1.16 Total: -66.94 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.89 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.98 -9.06 -44.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479931490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.763 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds