Wall clock time and date at job start Wed Apr 1 2020 04:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48500 * 109.47237 * 270.00091 * 3 2 1 5 5 H 1.48506 * 109.47030 * 29.99560 * 3 2 1 6 6 H 1.48496 * 109.47404 * 149.99892 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00560 * 197.01470 * 7 2 1 9 9 N 1.36943 * 119.99782 * 17.00985 * 7 2 1 10 10 C 1.47085 * 120.87943 * 26.59509 * 9 7 2 11 11 C 1.53233 * 108.51968 * 128.79060 * 10 9 7 12 12 N 1.46898 * 109.34305 * 53.82976 * 11 10 9 13 13 C 1.46898 * 111.00219 * 172.74287 * 12 11 10 14 14 C 1.53004 * 109.47128 * 169.99790 * 13 12 11 15 15 N 1.46497 * 109.47064 * 179.97438 * 14 13 12 16 16 C 1.34779 * 119.99868 * 179.97438 * 15 14 13 17 17 O 1.21678 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.46818 * 119.99850 * 180.02562 * 16 15 14 19 19 C 1.40415 * 126.54259 * 359.68714 * 18 16 15 20 20 N 1.30969 * 108.76542 * 179.81500 * 19 18 16 21 21 N 1.39704 * 109.48635 * 0.45680 * 20 19 18 22 22 C 1.36362 * 133.18943 * 179.73733 * 21 20 19 23 23 C 1.35291 * 119.81082 * 180.02562 * 22 21 20 24 24 N 1.33251 * 121.26925 * 359.94920 * 23 22 21 25 25 C 1.31413 * 121.07977 * 0.02720 * 24 23 22 26 26 C 1.36818 * 107.97551 * 359.71075 * 21 20 19 27 27 C 1.46896 * 111.26664 * 296.89539 * 12 11 10 28 28 C 1.47074 * 120.88324 * 206.56687 * 9 7 2 29 29 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.62639 * 9.08066 * 10 9 7 31 31 H 1.09002 * 109.78568 * 248.59437 * 10 9 7 32 32 H 1.09004 * 109.49031 * 173.78586 * 11 10 9 33 33 H 1.08997 * 109.49877 * 293.86299 * 11 10 9 34 34 H 1.09000 * 109.47322 * 289.99896 * 13 12 11 35 35 H 1.09000 * 109.47323 * 50.00046 * 13 12 11 36 36 H 1.09000 * 109.47106 * 300.00238 * 14 13 12 37 37 H 1.08997 * 109.47061 * 60.00405 * 14 13 12 38 38 H 0.97002 * 120.00404 * 0.02562 * 15 14 13 39 39 H 1.08007 * 125.61208 * 359.97438 * 19 18 16 40 40 H 1.08001 * 120.09113 * 0.02562 * 22 21 20 41 41 H 1.07993 * 119.36752 * 179.97438 * 23 22 21 42 42 H 1.07992 * 120.17815 * 180.02562 * 25 24 23 43 43 H 1.09005 * 109.49472 * 303.13919 * 27 12 11 44 44 H 1.09000 * 109.49394 * 183.06639 * 27 12 11 45 45 H 1.09005 * 109.63035 * 350.91919 * 28 9 7 46 46 H 1.08997 * 109.62936 * 111.49710 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0548 -1.2225 0.2742 9 7 1.3705 -2.3622 -0.3459 10 6 0.2048 -2.3427 -1.2427 11 6 0.4410 -3.3533 -2.3700 12 7 0.7559 -4.6653 -1.7892 13 6 0.8201 -5.7001 -2.8299 14 6 1.3893 -6.9889 -2.2333 15 7 1.4527 -8.0210 -3.2710 16 6 1.9251 -9.2477 -2.9734 17 8 2.2985 -9.4981 -1.8427 18 6 1.9892 -10.2819 -4.0135 19 6 1.5919 -10.1458 -5.3534 20 7 1.8038 -11.2801 -5.9729 21 7 2.3355 -12.2092 -5.0753 22 6 2.7233 -13.5106 -5.1994 23 6 3.2134 -14.1717 -4.1257 24 7 3.3282 -13.5756 -2.9395 25 6 2.9678 -12.3229 -2.7722 26 6 2.4542 -11.5987 -3.8566 27 6 2.0031 -4.6196 -1.0146 28 6 1.8311 -3.6609 0.1684 29 1 -0.4850 0.8401 0.0004 30 1 0.0842 -1.3450 -1.6646 31 1 -0.6925 -2.6164 -0.6875 32 1 -0.4579 -3.4326 -2.9816 33 1 1.2741 -3.0200 -2.9888 34 1 -0.1815 -5.8898 -3.2160 35 1 1.4638 -5.3601 -3.6412 36 1 2.3908 -6.7992 -1.8472 37 1 0.7456 -7.3290 -1.4221 38 1 1.1555 -7.8213 -4.1725 39 1 1.1818 -9.2521 -5.8001 40 1 2.6392 -14.0121 -6.1523 41 1 3.5180 -15.2024 -4.2320 42 1 3.0675 -11.8540 -1.8045 43 1 2.8147 -4.2687 -1.6521 44 1 2.2374 -5.6172 -0.6432 45 1 2.7856 -3.5347 0.6793 46 1 1.0921 -4.0633 0.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479931490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:13 Heat of formation + Delta-G solvation = 101.813940 kcal Electronic energy + Delta-G solvation = -28805.592857 eV Core-core repulsion = 24732.650858 eV Total energy + Delta-G solvation = -4072.941999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.62247 -40.64935 -39.72824 -39.26643 -36.84820 -35.36722 -34.75707 -33.25808 -32.47738 -31.85892 -30.93358 -29.68259 -27.64287 -25.93721 -25.46682 -24.75539 -24.10015 -23.66417 -22.47173 -21.45591 -20.77595 -19.62577 -18.73547 -18.48172 -17.94515 -17.30068 -17.24612 -16.85488 -16.52455 -16.46239 -16.12126 -15.89570 -15.65862 -15.38264 -15.26630 -15.02418 -14.85780 -14.57880 -14.42088 -14.11777 -14.04641 -13.95521 -13.13851 -12.99948 -12.92961 -12.59607 -12.44095 -12.38531 -12.27375 -12.02497 -12.00152 -11.88177 -11.47678 -11.41363 -11.12564 -11.05635 -11.01956 -10.57573 -10.11572 -9.25149 -9.02373 -8.66803 -7.86562 -5.31143 -0.75152 -0.32497 0.79009 0.93786 1.47694 1.48285 1.57753 2.07771 2.09603 2.46448 2.51704 2.89430 3.10215 3.15177 3.22136 3.28868 3.64730 3.69766 3.78293 3.86990 4.00791 4.12608 4.25742 4.32262 4.34750 4.37490 4.48190 4.49293 4.60132 4.67023 4.73369 4.89247 4.95446 4.99928 5.01219 5.05893 5.09291 5.21618 5.33509 5.38384 5.42050 5.62419 5.71745 6.08743 6.16139 6.25716 6.38726 6.47746 6.58315 7.14784 7.25532 7.85264 8.39301 9.20143 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.033050 B = 0.001712 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.987080 B =16350.846325 C =16766.800869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.183 3.817 11 C 0.054 3.946 12 N -0.540 5.540 13 C 0.052 3.948 14 C 0.128 3.872 15 N -0.708 5.708 16 C 0.596 3.404 17 O -0.584 6.584 18 C -0.299 4.299 19 C 0.130 3.870 20 N -0.323 5.323 21 N -0.252 5.252 22 C 0.070 3.930 23 C 0.030 3.970 24 N -0.452 5.452 25 C 0.144 3.856 26 C 0.083 3.917 27 C 0.049 3.951 28 C 0.142 3.858 29 H 0.250 0.750 30 H 0.058 0.942 31 H -0.001 1.001 32 H 0.088 0.912 33 H 0.023 0.977 34 H 0.098 0.902 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.242 0.758 40 H 0.222 0.778 41 H 0.229 0.771 42 H 0.187 0.813 43 H 0.026 0.974 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.833 -28.771 -16.574 33.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.394 4.394 8 H 0.084 0.916 9 N -0.338 5.338 10 C 0.057 3.943 11 C -0.075 4.075 12 N -0.266 5.266 13 C -0.076 4.076 14 C 0.004 3.996 15 N -0.360 5.360 16 C 0.385 3.615 17 O -0.466 6.466 18 C -0.317 4.317 19 C -0.049 4.049 20 N -0.145 5.145 21 N -0.019 5.019 22 C -0.059 4.059 23 C -0.113 4.113 24 N -0.164 5.164 25 C -0.034 4.034 26 C -0.041 4.041 27 C -0.081 4.081 28 C 0.016 3.984 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.017 0.983 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.252 0.748 39 H 0.258 0.742 40 H 0.238 0.762 41 H 0.245 0.755 42 H 0.204 0.796 43 H 0.044 0.956 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 3.838 -30.072 -16.073 34.314 hybrid contribution 0.371 2.443 -0.442 2.511 sum 4.208 -27.629 -16.515 32.462 Atomic orbital electron populations 1.70189 1.06586 1.25851 1.55497 1.25785 0.96105 1.01434 1.01344 0.85244 0.78002 0.79473 0.77579 1.21073 1.22125 1.19513 1.19538 0.92868 0.86005 1.40974 0.91608 1.44417 1.34272 1.02048 1.53112 1.20655 0.87758 0.96563 0.89360 1.22578 0.99817 0.88638 0.96509 1.61913 1.34153 1.05703 1.24806 1.22260 1.02248 0.90011 0.93085 1.21307 1.01125 0.86548 0.90629 1.45430 1.65396 1.10609 1.14609 1.17046 0.76461 0.81633 0.86348 1.90776 1.50991 1.81487 1.23306 1.19671 1.21671 0.93986 0.96350 1.24800 0.92415 0.97133 0.90518 1.77678 1.24228 0.99424 1.13219 1.46534 1.37483 1.10326 1.07564 1.23498 0.97288 0.79944 1.05184 1.23239 0.99150 1.03186 0.85680 1.68284 1.12899 1.09401 1.25810 1.23238 0.92801 0.89142 0.98173 1.20531 1.00503 0.94417 0.88625 1.22583 0.89942 0.99826 0.95710 1.21136 0.97339 0.85681 0.94206 0.94043 0.92363 0.98337 0.89399 0.95826 0.88413 0.93358 0.91951 0.91671 0.74775 0.74219 0.76152 0.75501 0.79644 0.95600 0.88831 0.92400 0.96701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.78 11.15 21.65 0.24 -55.54 16 2 C -0.05 -2.90 4.93 84.86 0.42 -2.48 16 3 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.26 -14.78 9.63 84.03 0.81 -13.97 16 8 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 9 N -0.61 -31.72 3.04 -698.15 -2.12 -33.84 16 10 C 0.18 8.92 5.42 86.35 0.47 9.39 16 11 C 0.05 1.97 5.58 86.38 0.48 2.45 16 12 N -0.54 -17.50 4.78 -895.28 -4.28 -21.78 16 13 C 0.05 1.15 5.38 86.30 0.46 1.62 16 14 C 0.13 2.85 4.93 86.38 0.43 3.27 16 15 N -0.71 -12.35 5.55 -466.95 -2.59 -14.94 16 16 C 0.60 13.42 7.79 86.49 0.67 14.10 16 17 O -0.58 -17.69 15.81 -4.28 -0.07 -17.76 16 18 C -0.30 -5.60 6.16 -19.94 -0.12 -5.72 16 19 C 0.13 1.70 11.44 85.35 0.98 2.68 16 20 N -0.32 -5.17 12.60 -56.59 -0.71 -5.88 16 21 N -0.25 -3.96 3.91 -187.15 -0.73 -4.69 16 22 C 0.07 0.57 11.24 83.31 0.94 1.50 16 23 C 0.03 0.24 11.07 83.80 0.93 1.17 16 24 N -0.45 -7.15 10.44 -195.87 -2.05 -9.20 16 25 C 0.14 2.73 10.98 85.22 0.94 3.66 16 26 C 0.08 1.60 6.77 39.39 0.27 1.86 16 27 C 0.05 1.67 5.04 86.38 0.44 2.10 16 28 C 0.14 6.14 6.69 86.35 0.58 6.71 16 29 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 30 H 0.06 3.18 6.12 -2.39 -0.01 3.16 16 31 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.09 2.75 8.11 -2.38 -0.02 2.73 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 0.98 8.08 -2.39 -0.02 0.96 16 36 H 0.06 1.57 6.18 -2.39 -0.01 1.56 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.42 4.09 7.39 -92.71 -0.69 3.41 16 39 H 0.24 0.86 7.46 -2.91 -0.02 0.84 16 40 H 0.22 -0.07 8.06 -2.91 -0.02 -0.09 16 41 H 0.23 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.19 3.76 7.20 -2.91 -0.02 3.74 16 43 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.09 2.79 5.73 -2.39 -0.01 2.78 16 45 H 0.06 2.42 7.95 -2.38 -0.02 2.40 16 46 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -79.31 376.62 -1.27 -80.57 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.33 Total: 7.49 kcal Atomic # 6 Polarization: 19.67 SS G_CDS: 8.67 Total: 28.35 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -12.24 Total: -145.88 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.07 Total: -17.76 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -79.31 -1.27 -80.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479931490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.386 kcal (2) G-P(sol) polarization free energy of solvation -79.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds