Wall clock time and date at job start Wed Apr 1 2020 04:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99864 * 2 1 4 4 C 1.53004 * 109.46919 * 269.99807 * 3 2 1 5 5 N 1.46904 * 109.47099 * 180.02562 * 4 3 2 6 6 C 1.46951 * 110.99855 * 170.00134 * 5 4 3 7 7 C 1.53055 * 109.36174 * 183.18886 * 6 5 4 8 8 N 1.46949 * 109.36597 * 301.59734 * 7 6 5 9 9 C 1.46904 * 111.00195 * 183.18570 * 8 7 6 10 10 C 1.50700 * 109.47192 * 170.00155 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28082 * 10 9 8 12 12 O 1.21283 * 119.99803 * 0.02562 * 10 9 8 13 13 C 1.46959 * 110.87931 * 59.32545 * 8 7 6 14 14 C 1.46951 * 111.00106 * 293.80417 * 5 4 3 15 15 C 1.34773 * 119.99995 * 179.97438 * 2 1 3 16 16 O 1.21277 * 119.99931 * 179.97438 * 15 2 1 17 17 C 1.50703 * 119.99992 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.47073 * 180.02562 * 17 15 2 19 19 C 1.76198 * 99.99802 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00085 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00427 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47095 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47335 * 119.99823 * 23 21 19 26 26 H 1.48500 * 109.47161 * 240.00050 * 23 21 19 27 27 H 1.08997 * 109.46823 * 90.00186 * 1 2 3 28 28 H 1.08996 * 109.46923 * 210.00237 * 1 2 3 29 29 H 1.08994 * 109.46816 * 330.00219 * 1 2 3 30 30 H 1.08997 * 109.46962 * 150.00664 * 3 2 1 31 31 H 1.08994 * 109.47559 * 29.99794 * 3 2 1 32 32 H 1.09003 * 109.46991 * 60.00542 * 4 3 2 33 33 H 1.08997 * 109.47453 * 300.00559 * 4 3 2 34 34 H 1.08999 * 109.49376 * 63.22676 * 6 5 4 35 35 H 1.09003 * 109.49309 * 303.15385 * 6 5 4 36 36 H 1.09004 * 109.48553 * 181.63067 * 7 6 5 37 37 H 1.08997 * 109.48537 * 61.57132 * 7 6 5 38 38 H 1.09009 * 109.46542 * 50.00185 * 9 8 7 39 39 H 1.08998 * 109.47050 * 290.00720 * 9 8 7 40 40 H 0.97004 * 119.99652 * 179.72868 * 11 10 9 41 41 H 0.97000 * 119.99894 * 359.71837 * 11 10 9 42 42 H 1.08992 * 109.49244 * 60.63967 * 13 8 7 43 43 H 1.09003 * 109.49250 * 180.71412 * 13 8 7 44 44 H 1.09003 * 109.48536 * 296.77581 * 14 5 4 45 45 H 1.08995 * 109.49344 * 56.84101 * 14 5 4 46 46 H 1.09004 * 109.46980 * 299.99718 * 17 15 2 47 47 H 1.08998 * 109.47641 * 59.99603 * 17 15 2 48 48 H 0.96999 * 120.00698 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1876 2.9823 -1.4426 6 6 3.6571 3.3191 -2.7937 7 6 4.4836 4.6061 -2.7376 8 7 3.6604 5.6901 -2.1838 9 6 4.3954 6.9620 -2.1838 10 6 3.4522 8.0873 -1.8447 11 7 3.9070 9.3549 -1.7914 12 8 2.2828 7.8528 -1.6243 13 6 3.1909 5.3533 -0.8326 14 6 2.3644 4.0663 -0.8888 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0020 19 6 1.4415 -5.2082 0.0026 20 1 0.3762 -5.0305 0.0024 21 6 1.9282 -6.5080 0.0043 22 7 3.2266 -6.7247 0.0050 23 14 0.7408 -7.9500 0.0055 24 1 -0.6547 -7.4422 0.0051 25 1 0.9669 -8.7786 -1.2059 26 1 0.9661 -8.7757 1.2191 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1384 0.5137 31 1 1.6085 2.0284 0.5138 32 1 1.5001 1.8407 -1.9564 33 1 3.0415 0.9507 -1.9564 34 1 2.7998 3.4659 -3.4507 35 1 4.2747 2.5068 -3.1772 36 1 4.8087 4.8736 -3.7430 37 1 5.3557 4.4507 -2.1024 38 1 4.8254 7.1331 -3.1708 39 1 5.1932 6.9206 -1.4422 40 1 3.2990 10.0797 -1.5770 41 1 4.8423 9.5424 -1.9674 42 1 4.0481 5.2064 -0.1758 43 1 2.5733 6.1655 -0.4491 44 1 1.4923 4.2216 -1.5241 45 1 2.0392 3.7988 0.1166 46 1 0.7584 -2.5298 0.8903 47 1 0.7590 -2.5303 -0.8896 48 1 3.5668 -7.6331 0.0066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481463497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:24 Heat of formation + Delta-G solvation = -47.833583 kcal Electronic energy + Delta-G solvation = -27503.518376 eV Core-core repulsion = 23527.238373 eV Total energy + Delta-G solvation = -3976.280002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.36657 -39.54850 -38.79600 -36.10507 -34.89943 -34.12597 -32.41118 -31.35736 -30.94283 -29.24009 -27.73571 -26.27050 -25.47970 -24.64857 -23.91267 -22.02051 -21.00998 -20.04191 -19.10925 -17.89613 -17.64203 -17.28174 -16.68730 -16.38364 -16.03210 -15.67903 -15.43694 -15.13703 -14.94595 -14.79139 -14.77799 -14.38283 -14.20273 -13.71653 -13.66821 -13.26604 -13.16610 -12.81099 -12.54766 -12.49530 -12.35560 -12.20424 -12.08228 -11.78152 -11.50466 -11.31100 -11.16370 -11.05750 -10.99775 -10.78118 -10.70301 -10.25101 -10.09902 -9.77618 -9.32343 -9.05725 -8.77100 -8.58380 -8.39674 -8.19605 -6.47851 -6.20034 -3.90290 2.20767 2.86251 2.92441 3.09759 3.22678 3.26806 3.32076 3.56175 3.61614 3.89645 4.21971 4.40516 4.54245 4.69947 4.76616 4.77462 4.84187 4.97351 5.09435 5.13088 5.14806 5.15856 5.21213 5.22951 5.28099 5.46734 5.48711 5.57178 5.59777 5.66442 5.71768 5.74539 5.77409 5.90410 5.94332 6.06371 6.16430 6.29033 6.45042 6.60982 6.65267 6.86546 6.90050 6.94532 7.57248 7.61749 7.83607 8.37116 8.60426 9.25381 10.87444 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.001664 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.680376 B =16823.391950 C =17232.097910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.625 5.625 3 C 0.123 3.877 4 C 0.043 3.957 5 N -0.537 5.537 6 C 0.059 3.941 7 C 0.059 3.941 8 N -0.524 5.524 9 C 0.034 3.966 10 C 0.516 3.484 11 N -0.860 5.860 12 O -0.523 6.523 13 C 0.053 3.947 14 C 0.056 3.944 15 C 0.532 3.468 16 O -0.512 6.512 17 C -0.150 4.150 18 S -0.062 6.062 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.402 0.598 41 H 0.400 0.600 42 H 0.039 0.961 43 H 0.095 0.905 44 H 0.044 0.956 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 31.940 -4.377 32.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.001 4.001 4 C -0.086 4.086 5 N -0.263 5.263 6 C -0.069 4.069 7 C -0.069 4.069 8 N -0.249 5.249 9 C -0.097 4.097 10 C 0.300 3.700 11 N -0.425 5.425 12 O -0.398 6.398 13 C -0.075 4.075 14 C -0.072 4.072 15 C 0.320 3.680 16 O -0.386 6.386 17 C -0.301 4.301 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.228 0.772 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.524 31.430 -4.258 31.754 hybrid contribution -1.997 -0.427 -0.111 2.045 sum -0.473 31.003 -4.370 31.313 Atomic orbital electron populations 1.21775 0.79690 1.03113 1.01681 1.47846 1.06804 1.05707 1.75807 1.21327 0.98367 0.84373 0.95998 1.22460 0.96769 0.91165 0.98159 1.62080 1.39555 1.02501 1.22115 1.22120 0.98796 0.96472 0.89507 1.22206 0.94693 0.90153 0.99882 1.61860 1.38343 1.01056 1.23675 1.21946 0.94673 0.89761 1.03331 1.20597 0.89141 0.84047 0.76182 1.43883 1.14730 1.08703 1.75147 1.90742 1.17784 1.83545 1.47687 1.22351 0.98973 0.97819 0.88308 1.22187 0.94740 0.89956 1.00294 1.20351 0.87967 0.84546 0.75135 1.90702 1.13667 1.86751 1.47460 1.23563 1.04533 0.97278 1.04695 1.85396 1.08103 0.93355 1.96689 1.22907 0.94355 0.92228 1.58760 0.90906 1.24989 0.95657 0.98368 0.94567 1.70030 1.11726 1.21530 1.47001 0.86122 0.80367 0.81147 0.77885 1.19623 1.20581 1.20579 0.92898 0.90570 0.91462 0.89025 0.91068 0.94715 0.89979 0.93892 0.89794 0.90127 0.93526 0.87698 0.91637 0.76721 0.77153 0.94276 0.88655 0.93789 0.90074 0.89268 0.89313 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.29 59.85 0.62 1.49 16 2 N -0.63 -9.10 2.87 -181.57 -0.52 -9.62 16 3 C 0.12 1.58 5.38 -4.04 -0.02 1.56 16 4 C 0.04 0.53 5.28 -3.82 -0.02 0.51 16 5 N -0.54 -6.00 4.71 -234.46 -1.10 -7.10 16 6 C 0.06 0.59 5.61 -3.77 -0.02 0.57 16 7 C 0.06 0.47 5.61 -3.77 -0.02 0.45 16 8 N -0.52 -4.62 4.45 -235.90 -1.05 -5.67 16 9 C 0.03 0.20 5.45 -4.97 -0.03 0.17 16 10 C 0.52 3.75 7.80 -10.98 -0.09 3.66 16 11 N -0.86 -2.74 8.87 31.22 0.28 -2.46 16 12 O -0.52 -6.23 15.18 5.55 0.08 -6.15 16 13 C 0.05 0.51 5.26 -3.76 -0.02 0.49 16 14 C 0.06 0.57 5.41 -3.77 -0.02 0.55 16 15 C 0.53 10.32 7.69 -10.99 -0.08 10.24 16 16 O -0.51 -11.88 15.44 5.56 0.09 -11.79 16 17 C -0.15 -3.10 4.71 36.01 0.17 -2.93 16 18 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 19 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 23 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 29 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 30 H 0.09 1.39 7.42 -51.93 -0.39 1.01 16 31 H 0.07 0.74 6.25 -51.93 -0.32 0.42 16 32 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.39 8.03 -51.92 -0.42 -0.03 16 39 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 40 H 0.40 1.09 8.93 -40.82 -0.36 0.73 16 41 H 0.40 0.02 8.83 -40.82 -0.36 -0.34 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.10 1.01 5.85 -51.93 -0.30 0.71 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.76 6.34 -51.93 -0.33 0.43 16 46 H 0.09 1.71 7.40 -51.91 -0.38 1.32 16 47 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 48 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -37.85 398.38 -9.85 -47.70 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.79 Total: -1.68 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 0.66 Total: 3.75 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -1.66 Total: -50.41 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.85 -9.85 -47.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481463497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.133 kcal (2) G-P(sol) polarization free energy of solvation -37.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds