Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99864 * 2 1 4 4 C 1.53004 * 109.46919 * 269.99807 * 3 2 1 5 5 N 1.46904 * 109.47099 * 180.02562 * 4 3 2 6 6 C 1.46951 * 110.99855 * 170.00134 * 5 4 3 7 7 C 1.53055 * 109.36174 * 183.18886 * 6 5 4 8 8 N 1.46949 * 109.36597 * 301.59734 * 7 6 5 9 9 C 1.46904 * 111.00195 * 183.18570 * 8 7 6 10 10 C 1.50700 * 109.47192 * 170.00155 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28082 * 10 9 8 12 12 O 1.21283 * 119.99803 * 0.02562 * 10 9 8 13 13 C 1.46959 * 110.87931 * 59.32545 * 8 7 6 14 14 C 1.46951 * 111.00106 * 293.80417 * 5 4 3 15 15 C 1.34773 * 119.99995 * 179.97438 * 2 1 3 16 16 O 1.21277 * 119.99931 * 179.97438 * 15 2 1 17 17 C 1.50703 * 119.99992 * 0.02562 * 15 2 1 18 18 S 1.81001 * 109.47073 * 180.02562 * 17 15 2 19 19 C 1.76198 * 99.99802 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00273 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.00070 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00085 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00427 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47095 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47335 * 119.99823 * 23 21 19 26 26 H 1.48500 * 109.47161 * 240.00050 * 23 21 19 27 27 H 1.08997 * 109.46823 * 90.00186 * 1 2 3 28 28 H 1.08996 * 109.46923 * 210.00237 * 1 2 3 29 29 H 1.08994 * 109.46816 * 330.00219 * 1 2 3 30 30 H 1.08997 * 109.46962 * 150.00664 * 3 2 1 31 31 H 1.08994 * 109.47559 * 29.99794 * 3 2 1 32 32 H 1.09003 * 109.46991 * 60.00542 * 4 3 2 33 33 H 1.08997 * 109.47453 * 300.00559 * 4 3 2 34 34 H 1.08999 * 109.49376 * 63.22676 * 6 5 4 35 35 H 1.09003 * 109.49309 * 303.15385 * 6 5 4 36 36 H 1.09004 * 109.48553 * 181.63067 * 7 6 5 37 37 H 1.08997 * 109.48537 * 61.57132 * 7 6 5 38 38 H 1.09009 * 109.46542 * 50.00185 * 9 8 7 39 39 H 1.08998 * 109.47050 * 290.00720 * 9 8 7 40 40 H 0.97004 * 119.99652 * 179.72868 * 11 10 9 41 41 H 0.97000 * 119.99894 * 359.71837 * 11 10 9 42 42 H 1.08992 * 109.49244 * 60.63967 * 13 8 7 43 43 H 1.09003 * 109.49250 * 180.71412 * 13 8 7 44 44 H 1.09003 * 109.48536 * 296.77581 * 14 5 4 45 45 H 1.08995 * 109.49344 * 56.84101 * 14 5 4 46 46 H 1.09004 * 109.46980 * 299.99718 * 17 15 2 47 47 H 1.08998 * 109.47641 * 59.99603 * 17 15 2 48 48 H 0.96999 * 120.00698 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 7 3.1876 2.9823 -1.4426 6 6 3.6571 3.3191 -2.7937 7 6 4.4836 4.6061 -2.7376 8 7 3.6604 5.6901 -2.1838 9 6 4.3954 6.9620 -2.1838 10 6 3.4522 8.0873 -1.8447 11 7 3.9070 9.3549 -1.7914 12 8 2.2828 7.8528 -1.6243 13 6 3.1909 5.3533 -0.8326 14 6 2.3644 4.0663 -0.8888 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0001 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0020 19 6 1.4415 -5.2082 0.0026 20 1 0.3762 -5.0305 0.0024 21 6 1.9282 -6.5080 0.0043 22 7 3.2266 -6.7247 0.0050 23 14 0.7408 -7.9500 0.0055 24 1 -0.6547 -7.4422 0.0051 25 1 0.9669 -8.7786 -1.2059 26 1 0.9661 -8.7757 1.2191 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.1500 1.1384 0.5137 31 1 1.6085 2.0284 0.5138 32 1 1.5001 1.8407 -1.9564 33 1 3.0415 0.9507 -1.9564 34 1 2.7998 3.4659 -3.4507 35 1 4.2747 2.5068 -3.1772 36 1 4.8087 4.8736 -3.7430 37 1 5.3557 4.4507 -2.1024 38 1 4.8254 7.1331 -3.1708 39 1 5.1932 6.9206 -1.4422 40 1 3.2990 10.0797 -1.5770 41 1 4.8423 9.5424 -1.9674 42 1 4.0481 5.2064 -0.1758 43 1 2.5733 6.1655 -0.4491 44 1 1.4923 4.2216 -1.5241 45 1 2.0392 3.7988 0.1166 46 1 0.7584 -2.5298 0.8903 47 1 0.7590 -2.5303 -0.8896 48 1 3.5668 -7.6331 0.0066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481463497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = -80.069769 kcal Electronic energy + Delta-G solvation = -27504.916241 eV Core-core repulsion = 23527.238373 eV Total energy + Delta-G solvation = -3977.677868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.10137 -40.76367 -39.61884 -37.14772 -35.96624 -34.59825 -34.58141 -32.32546 -31.83651 -30.39888 -28.68892 -27.69354 -27.21641 -25.51915 -24.68010 -23.03410 -21.51519 -20.79577 -20.59613 -19.52635 -18.32974 -18.09581 -17.82460 -17.40827 -16.95006 -16.87508 -16.61579 -16.49052 -16.06423 -15.83156 -15.65554 -15.48427 -15.22353 -14.92340 -14.65498 -14.37137 -14.34569 -14.10075 -13.87328 -13.56702 -13.21433 -13.19063 -13.12958 -12.96661 -12.91151 -12.78314 -12.58332 -12.25982 -12.16300 -11.96377 -11.71148 -11.61668 -11.15472 -10.91199 -10.84622 -10.56306 -10.25958 -9.78170 -9.43005 -9.26228 -8.66950 -8.34343 -6.12657 1.25932 1.41743 1.45974 1.56506 1.58469 1.69725 2.06710 2.27597 2.42285 2.93434 2.99835 3.07006 3.27587 3.68525 3.84786 3.89348 4.01207 4.05596 4.17832 4.20566 4.25788 4.30889 4.35042 4.38682 4.39648 4.47536 4.48131 4.54360 4.59997 4.67570 4.80338 4.85293 4.89111 4.90565 4.93632 5.01348 5.06337 5.42352 5.51933 5.82325 5.90785 5.96604 6.06683 6.11300 6.20283 6.26841 6.55686 7.06925 7.14507 7.43060 8.75211 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.036656 B = 0.001664 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.680376 B =16823.391950 C =17232.097910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.611 5.611 3 C 0.126 3.874 4 C 0.054 3.946 5 N -0.544 5.544 6 C 0.056 3.944 7 C 0.065 3.935 8 N -0.540 5.540 9 C 0.034 3.966 10 C 0.512 3.488 11 N -0.839 5.839 12 O -0.577 6.577 13 C 0.060 3.940 14 C 0.059 3.941 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.123 4.123 18 S -0.153 6.153 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.131 0.869 39 H 0.085 0.915 40 H 0.406 0.594 41 H 0.418 0.582 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.034 0.966 45 H 0.089 0.911 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 33.520 -4.647 33.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.003 3.997 4 C -0.075 4.075 5 N -0.270 5.270 6 C -0.072 4.072 7 C -0.063 4.063 8 N -0.266 5.266 9 C -0.096 4.096 10 C 0.297 3.703 11 N -0.404 5.404 12 O -0.456 6.456 13 C -0.068 4.068 14 C -0.068 4.068 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.180 1.180 25 H -0.199 1.199 26 H -0.199 1.199 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.102 0.898 40 H 0.238 0.762 41 H 0.249 0.751 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.052 0.948 45 H 0.107 0.893 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.080 33.098 -4.538 33.408 hybrid contribution -1.496 -0.707 -0.045 1.655 sum -1.576 32.391 -4.583 32.752 Atomic orbital electron populations 1.22111 0.76820 1.04915 1.03222 1.47832 1.08529 1.04672 1.73532 1.21413 0.97732 0.84082 0.96509 1.22245 0.96717 0.91168 0.97342 1.62091 1.39551 1.02283 1.23045 1.22180 0.98788 0.97532 0.88682 1.22176 0.93952 0.89099 1.01060 1.61818 1.39429 1.02268 1.23075 1.22063 0.94364 0.87837 1.05369 1.20900 0.88569 0.85300 0.75508 1.43724 1.15822 1.07594 1.73289 1.90722 1.19963 1.84464 1.50500 1.22208 0.98642 0.96936 0.89012 1.22190 0.94363 0.89977 1.00310 1.20171 0.87315 0.85477 0.75264 1.90685 1.15623 1.87443 1.50188 1.23382 1.02712 0.94987 1.06372 1.85587 1.12668 0.97285 1.97021 1.23232 0.94632 0.92644 1.58796 0.89913 1.26130 0.97594 1.01672 0.93717 1.70193 1.14117 1.22418 1.48069 0.84898 0.78185 0.76731 0.78076 1.17990 1.19929 1.19916 0.91434 0.90400 0.88149 0.91608 0.87736 0.93835 0.92824 0.94497 0.90204 0.87962 0.93621 0.85132 0.89768 0.76246 0.75081 0.94356 0.89668 0.94765 0.89305 0.87334 0.87558 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.29 127.77 1.31 2.63 16 2 N -0.61 -16.99 2.87 -846.77 -2.43 -19.42 16 3 C 0.13 3.12 5.38 86.38 0.47 3.59 16 4 C 0.05 1.32 5.28 86.30 0.46 1.78 16 5 N -0.54 -11.94 4.71 -895.71 -4.22 -16.16 16 6 C 0.06 1.09 5.61 86.31 0.48 1.58 16 7 C 0.06 0.96 5.61 86.31 0.48 1.44 16 8 N -0.54 -8.78 4.45 -900.26 -4.00 -12.78 16 9 C 0.03 0.32 5.45 85.56 0.47 0.79 16 10 C 0.51 6.72 7.80 87.66 0.68 7.40 16 11 N -0.84 -3.69 8.87 -173.53 -1.54 -5.23 16 12 O -0.58 -13.60 15.18 -3.04 -0.05 -13.64 16 13 C 0.06 1.11 5.26 86.31 0.45 1.56 16 14 C 0.06 1.16 5.41 86.31 0.47 1.63 16 15 C 0.53 20.65 7.69 87.66 0.67 21.32 16 16 O -0.56 -27.07 15.44 -3.02 -0.05 -27.12 16 17 C -0.12 -5.06 4.71 71.24 0.34 -4.72 16 18 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 19 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.78 5.49 84.86 0.47 1.24 16 22 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 23 Si 1.00 43.88 29.55 68.60 2.03 45.91 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.46 6.44 -2.39 -0.02 1.45 16 29 H 0.10 1.26 7.89 -2.39 -0.02 1.25 16 30 H 0.07 2.03 7.42 -2.39 -0.02 2.01 16 31 H 0.10 1.92 6.25 -2.39 -0.01 1.91 16 32 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 33 H 0.05 1.62 8.03 -2.39 -0.02 1.60 16 34 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.58 8.07 -2.39 -0.02 1.56 16 36 H 0.10 1.06 8.07 -2.39 -0.02 1.04 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.13 0.55 8.03 -2.38 -0.02 0.53 16 39 H 0.08 0.51 8.12 -2.39 -0.02 0.50 16 40 H 0.41 1.55 8.93 -92.71 -0.83 0.72 16 41 H 0.42 -1.07 8.83 -92.71 -0.82 -1.89 16 42 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 1.79 5.85 -2.39 -0.01 1.78 16 44 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 1.53 6.34 -2.39 -0.02 1.52 16 46 H 0.11 4.01 7.40 -2.39 -0.02 3.99 16 47 H 0.11 3.96 8.11 -2.40 -0.02 3.94 16 48 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -86.35 398.38 -4.40 -90.76 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -0.66 Total: 14.22 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.39 Total: 9.44 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -11.91 Total: -109.75 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -0.09 Total: -40.76 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -86.35 -4.40 -90.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481463497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.686 kcal (2) G-P(sol) polarization free energy of solvation -86.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds