Wall clock time and date at job start Wed Apr 1 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99659 * 2 1 4 4 H 1.48493 * 109.47400 * 270.00289 * 3 2 1 5 5 H 1.48502 * 109.47319 * 30.00397 * 3 2 1 6 6 H 1.48503 * 109.46833 * 150.00277 * 3 2 1 7 7 C 1.38810 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99829 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00080 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00136 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47343 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47298 * 179.97438 * 11 10 9 13 13 H 1.09001 * 109.49640 * 305.06848 * 12 11 10 14 14 C 1.53043 * 109.49606 * 185.00180 * 12 11 10 15 15 C 1.53045 * 109.53416 * 178.68372 * 14 12 11 16 16 C 1.53194 * 109.34062 * 61.34662 * 15 14 12 17 17 N 1.46928 * 108.77135 * 305.41510 * 16 15 14 18 18 C 1.34773 * 120.60304 * 233.53095 * 17 16 15 19 19 O 1.21521 * 120.00181 * 172.01772 * 18 17 16 20 20 C 1.48124 * 119.99949 * 352.02202 * 18 17 16 21 21 C 1.39822 * 119.37219 * 170.22894 * 20 18 17 22 22 C 1.36975 * 119.60572 * 179.97438 * 21 20 18 23 23 C 1.39814 * 118.24999 * 0.02562 * 22 21 20 24 24 N 1.34651 * 135.00150 * 179.97438 * 23 22 21 25 25 N 1.28671 * 109.15673 * 180.02562 * 24 23 22 26 26 N 1.28765 * 111.85149 * 0.02562 * 25 24 23 27 27 H 0.96991 * 125.86156 * 180.02562 * 26 25 24 28 28 C 1.37258 * 108.27892 * 359.97438 * 26 25 24 29 29 N 1.31957 * 134.70871 * 180.33214 * 28 26 25 30 30 C 1.46927 * 118.76964 * 53.55283 * 17 16 15 31 31 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 32 32 H 0.97004 * 120.00094 * 359.97438 * 9 7 2 33 33 H 1.08995 * 109.47604 * 59.99892 * 10 9 7 34 34 H 1.09006 * 109.47139 * 299.99788 * 10 9 7 35 35 H 1.09000 * 109.46910 * 59.99862 * 11 10 9 36 36 H 1.08997 * 109.47036 * 299.99971 * 11 10 9 37 37 H 1.09000 * 109.46305 * 58.66172 * 14 12 11 38 38 H 1.08998 * 109.45633 * 298.70218 * 14 12 11 39 39 H 1.09001 * 109.49335 * 181.31111 * 15 14 12 40 40 H 1.08996 * 109.49934 * 301.37866 * 15 14 12 41 41 H 1.09001 * 109.58502 * 65.16537 * 16 15 14 42 42 H 1.08998 * 109.58457 * 185.59145 * 16 15 14 43 43 H 1.07996 * 120.19756 * 359.97438 * 21 20 18 44 44 H 1.07997 * 120.87142 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.58886 * 186.62424 * 30 17 16 46 46 H 1.09002 * 109.69792 * 66.26858 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 6 6.3815 -3.5162 -0.0025 13 1 6.0520 -4.1268 0.8382 14 6 7.8815 -3.2400 0.1235 15 6 8.6450 -4.5660 0.1561 16 6 8.4012 -5.3241 -1.1526 17 7 6.9527 -5.4659 -1.3540 18 6 6.4058 -6.6782 -1.5725 19 8 5.1974 -6.8048 -1.5931 20 6 7.2777 -7.8562 -1.7873 21 6 6.7110 -9.1343 -1.8075 22 6 7.5128 -10.2269 -2.0064 23 6 8.8840 -10.0182 -2.1830 24 7 9.9487 -10.8147 -2.3951 25 7 11.0073 -10.0890 -2.4868 26 7 10.7427 -8.8362 -2.3506 27 1 11.3874 -8.1124 -2.3845 28 6 9.3916 -8.7008 -2.1504 29 7 8.5791 -7.6784 -1.9611 30 6 6.1118 -4.2617 -1.3133 31 1 -0.4850 0.8400 0.0004 32 1 3.8647 -0.3620 -0.0014 33 1 3.8486 -3.0418 -0.8924 34 1 3.8492 -3.0430 0.8876 35 1 5.8797 -1.6204 0.8885 36 1 5.8797 -1.6189 -0.8914 37 1 8.0730 -2.6879 1.0436 38 1 8.2149 -2.6498 -0.7300 39 1 9.7111 -4.3691 0.2693 40 1 8.2949 -5.1669 0.9953 41 1 8.8323 -4.7662 -1.9838 42 1 8.8609 -6.3107 -1.0944 43 1 5.6476 -9.2592 -1.6672 44 1 7.0967 -11.2233 -2.0261 45 1 5.0612 -4.5479 -1.3616 46 1 6.3539 -3.6159 -2.1574 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481977261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:16 Heat of formation + Delta-G solvation = 121.671583 kcal Electronic energy + Delta-G solvation = -29469.253923 eV Core-core repulsion = 25397.173015 eV Total energy + Delta-G solvation = -4072.080907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.00662 -40.99890 -39.21225 -37.87599 -35.61761 -34.92381 -33.67071 -32.43029 -32.22435 -31.58068 -30.88705 -27.94472 -26.84724 -25.21926 -24.49308 -24.04123 -23.33578 -22.34084 -21.19197 -20.79674 -19.87628 -19.39077 -19.01607 -17.80486 -17.43786 -17.23167 -16.36926 -15.93026 -15.69318 -15.31308 -14.78349 -14.58372 -14.27645 -14.10689 -13.95101 -13.74161 -13.50060 -13.44222 -13.30568 -12.97422 -12.91101 -12.71568 -12.50151 -12.30517 -12.12586 -11.58179 -11.36606 -11.30392 -11.18001 -10.92670 -10.67644 -10.64175 -10.54746 -10.24685 -10.02778 -9.89865 -9.76438 -9.54926 -9.42511 -8.84690 -8.81290 -7.18409 -5.72533 -3.07794 -0.52960 0.34244 1.45731 1.47350 2.28698 2.57248 3.03958 3.14426 3.39253 3.41721 3.46927 3.55757 3.72313 4.01026 4.15546 4.53174 4.62339 4.66632 4.74068 4.74257 4.79837 4.91157 5.10028 5.13087 5.23695 5.32776 5.44581 5.51220 5.54092 5.59254 5.63969 5.66581 5.76779 5.85143 5.86795 5.90755 5.95907 6.03761 6.12930 6.20122 6.30507 6.41506 6.67263 6.79536 6.82104 7.11322 7.48421 7.77865 8.04915 8.46653 9.25991 9.98245 10.18269 11.46022 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.002096 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.038832 B =13353.511566 C =14278.792704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.758 5.758 10 C 0.154 3.846 11 C -0.123 4.123 12 C -0.095 4.095 13 H 0.077 0.923 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.074 3.926 17 N -0.585 5.585 18 C 0.566 3.434 19 O -0.515 6.515 20 C 0.156 3.844 21 C -0.120 4.120 22 C 0.003 3.997 23 C -0.024 4.024 24 N -0.236 5.236 25 N 0.011 4.989 26 N -0.402 5.402 27 H 0.459 0.541 28 C 0.208 3.792 29 N -0.435 5.435 30 C 0.111 3.889 31 H 0.259 0.741 32 H 0.360 0.640 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.137 0.863 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.103 0.897 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.545 -19.302 -3.844 33.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.114 4.114 13 H 0.095 0.905 14 C -0.154 4.154 15 C -0.174 4.174 16 C -0.048 4.048 17 N -0.316 5.316 18 C 0.351 3.649 19 O -0.389 6.389 20 C 0.003 3.997 21 C -0.143 4.143 22 C -0.028 4.028 23 C -0.151 4.151 24 N -0.113 5.113 25 N 0.028 4.972 26 N -0.134 5.134 27 H 0.308 0.692 28 C -0.035 4.035 29 N -0.153 5.153 30 C -0.011 4.011 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.154 0.846 43 H 0.187 0.813 44 H 0.180 0.820 45 H 0.122 0.878 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 27.112 -19.735 -4.103 33.784 hybrid contribution 0.085 1.924 0.157 1.933 sum 27.197 -17.810 -3.946 32.748 Atomic orbital electron populations 1.69710 1.05073 1.25724 1.57822 1.24693 0.95275 0.97209 1.02250 0.86520 0.79154 0.84981 0.77711 1.21126 1.21775 1.20405 1.19093 0.80702 0.94773 1.42609 0.89186 1.42725 1.04081 1.02302 1.91194 1.20699 0.88589 0.89234 0.98754 1.21789 0.96343 0.95724 1.02267 1.21439 0.95054 0.97139 0.97807 0.90486 1.21618 0.94673 0.96786 1.02349 1.21973 1.00350 0.97103 0.98012 1.22933 0.79945 1.05072 0.96875 1.47977 1.09091 1.06183 1.68394 1.17708 0.86808 0.82093 0.78287 1.90878 1.13063 1.84067 1.50913 1.21406 0.87750 0.94794 0.95737 1.21789 1.03080 0.90511 0.98966 1.20587 0.88259 1.01046 0.92898 1.20696 0.96253 0.91113 1.07040 1.75446 0.94322 1.24515 1.17052 1.78142 1.20940 0.86739 1.11411 1.44690 1.05847 1.08716 1.54101 0.69212 1.20075 0.86695 0.92378 1.04361 1.66669 1.03578 1.30585 1.14436 1.21959 0.96824 0.84578 0.97719 0.93124 0.80777 0.95287 0.95624 0.91553 0.91805 0.91570 0.91740 0.91004 0.91776 0.91607 0.84640 0.81261 0.82010 0.87846 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.93 13.97 55.49 0.78 -29.16 16 2 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 3 Si 0.89 22.41 27.73 -169.99 -4.71 17.69 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.82 8.06 -52.48 -0.42 2.39 16 9 N -0.76 -18.43 5.41 -59.91 -0.32 -18.76 16 10 C 0.15 3.01 6.02 -4.04 -0.02 2.98 16 11 C -0.12 -1.78 4.80 -26.73 -0.13 -1.91 16 12 C -0.09 -1.12 2.34 -90.50 -0.21 -1.33 16 13 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.12 -1.08 5.17 -26.69 -0.14 -1.22 16 15 C -0.14 -1.06 6.08 -26.61 -0.16 -1.23 16 16 C 0.07 0.61 5.86 -3.71 -0.02 0.59 16 17 N -0.59 -6.38 2.97 -173.77 -0.52 -6.89 16 18 C 0.57 6.70 7.65 -12.20 -0.09 6.61 16 19 O -0.51 -7.72 15.76 5.35 0.08 -7.63 16 20 C 0.16 1.44 6.57 -82.93 -0.54 0.89 16 21 C -0.12 -0.88 9.55 -39.45 -0.38 -1.25 16 22 C 0.00 0.02 10.17 -39.45 -0.40 -0.38 16 23 C -0.02 -0.20 7.38 -84.91 -0.63 -0.82 16 24 N -0.24 -2.17 12.43 32.12 0.40 -1.77 16 25 N 0.01 0.09 13.28 60.35 0.80 0.89 16 26 N -0.40 -2.24 7.06 31.13 0.22 -2.02 16 27 H 0.46 0.82 8.96 -190.27 -1.71 -0.88 16 28 C 0.21 1.59 8.56 -156.27 -1.34 0.25 16 29 N -0.44 -3.53 6.14 -8.90 -0.05 -3.58 16 30 C 0.11 1.36 5.34 -3.71 -0.02 1.34 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 32 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 33 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.14 1.04 4.05 -83.92 -0.34 0.70 16 43 H 0.17 1.08 7.64 -52.49 -0.40 0.68 16 44 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 45 H 0.10 1.52 5.72 -51.93 -0.30 1.22 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 371.38 15.07 5.60 5.60 Total: -1.00 -35.87 371.38 -9.63 -45.50 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -7.56 Total: 2.89 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.34 Total: -2.75 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: 1.30 Total: -61.30 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.63 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.87 -9.63 -45.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481977261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.172 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds