Wall clock time and date at job start Wed Apr 1 2020 04:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99827 * 2 1 4 4 H 1.48497 * 109.47054 * 239.99801 * 3 2 1 5 5 H 1.48499 * 109.46968 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46961 * 120.00043 * 3 2 1 7 7 C 1.38806 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00163 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00212 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47221 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46729 * 180.02562 * 11 10 9 13 13 C 1.53350 * 109.42146 * 295.12916 * 12 11 10 14 14 C 1.53190 * 109.15108 * 178.67846 * 13 12 11 15 15 N 1.46926 * 108.89516 * 54.57670 * 14 13 12 16 16 C 1.34774 * 120.63236 * 126.29804 * 15 14 13 17 17 O 1.21570 * 120.00162 * 176.08163 * 16 15 14 18 18 C 1.47721 * 119.99898 * 356.08670 * 16 15 14 19 19 C 1.40115 * 120.35308 * 50.66477 * 18 16 15 20 20 N 1.31258 * 121.14885 * 179.97438 * 19 18 16 21 21 C 1.32718 * 121.80364 * 0.02562 * 20 19 18 22 22 N 1.37115 * 133.40414 * 179.97438 * 21 20 19 23 23 H 0.96996 * 126.59810 * 0.02562 * 22 21 20 24 24 N 1.40194 * 106.81618 * 179.97438 * 22 21 20 25 25 N 1.28665 * 109.50934 * 0.02562 * 24 22 21 26 26 C 1.35330 * 110.00185 * 359.97438 * 25 24 22 27 27 C 1.39433 * 120.34735 * 230.39091 * 18 16 15 28 28 C 1.46933 * 118.73758 * 306.32236 * 15 14 13 29 29 C 1.53042 * 109.45629 * 175.00107 * 12 11 10 30 30 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 31 31 H 0.97004 * 119.99895 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46444 * 60.00277 * 10 9 7 33 33 H 1.09004 * 109.46978 * 300.00205 * 10 9 7 34 34 H 1.09003 * 109.46448 * 60.00501 * 11 10 9 35 35 H 1.08993 * 109.47350 * 300.00469 * 11 10 9 36 36 H 1.09005 * 109.46051 * 55.03241 * 12 11 10 37 37 H 1.09001 * 109.68361 * 58.71232 * 13 12 11 38 38 H 1.09001 * 109.47436 * 298.51613 * 13 12 11 39 39 H 1.08998 * 109.58785 * 294.71808 * 14 13 12 40 40 H 1.08999 * 109.59130 * 174.43623 * 14 13 12 41 41 H 1.08001 * 119.42276 * 0.02562 * 19 18 16 42 42 H 1.07997 * 120.95250 * 359.97438 * 27 18 16 43 43 H 1.09000 * 109.58441 * 173.39206 * 28 15 14 44 44 H 1.08995 * 109.58642 * 293.67628 * 28 15 14 45 45 H 1.09004 * 109.49795 * 61.43682 * 29 12 11 46 46 H 1.08996 * 109.52560 * 301.35489 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8289 -6.1446 0.0018 13 6 2.6157 -6.2798 -1.3075 14 6 3.4051 -7.5924 -1.2863 15 7 2.4781 -8.7009 -1.0203 16 6 2.4241 -9.7642 -1.8466 17 8 1.7051 -10.7070 -1.5779 18 6 3.2387 -9.7843 -3.0787 19 6 4.6102 -9.5028 -3.0254 20 7 5.3488 -9.5167 -4.1104 21 6 4.8359 -9.7955 -5.3022 22 7 5.3700 -9.8757 -6.5625 23 1 6.2965 -9.7276 -6.8084 24 7 4.3197 -10.2139 -7.4274 25 7 3.2296 -10.3314 -6.7541 26 6 3.4665 -10.0899 -5.4438 27 6 2.6519 -10.0890 -4.3063 28 6 1.6106 -8.6278 0.1634 29 6 0.8389 -7.3049 0.1282 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 2.6847 -3.7144 0.8906 33 1 2.6848 -3.7145 -0.8895 34 1 0.4370 -4.7621 -0.8887 35 1 0.4375 -4.7618 0.8913 36 1 2.5207 -6.1641 0.8440 37 1 3.3055 -5.4420 -1.4094 38 1 1.9228 -6.2855 -2.1489 39 1 4.1607 -7.5518 -0.5017 40 1 3.8884 -7.7439 -2.2514 41 1 5.0678 -9.2712 -2.0749 42 1 1.5982 -10.3148 -4.3775 43 1 0.9080 -9.4611 0.1535 44 1 2.2197 -8.6741 1.0661 45 1 0.1626 -7.3008 -0.7266 46 1 0.2639 -7.1946 1.0475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481999838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:32 Heat of formation + Delta-G solvation = 75.646377 kcal Electronic energy + Delta-G solvation = -29154.338935 eV Core-core repulsion = 25080.262226 eV Total energy + Delta-G solvation = -4074.076710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.58622 -41.57679 -39.65631 -38.86133 -36.88140 -35.26330 -35.04711 -33.25034 -32.88547 -32.40040 -31.42340 -29.86839 -26.92483 -26.24212 -25.52322 -24.33999 -24.29809 -23.81613 -22.56868 -21.54987 -20.52838 -19.90612 -19.50865 -19.08149 -17.93653 -17.73015 -17.28428 -16.96156 -16.64895 -16.26483 -15.87582 -15.47248 -15.44181 -15.25650 -14.91782 -14.73869 -14.62863 -14.35246 -14.12450 -14.06118 -13.85892 -13.71872 -13.25772 -13.09518 -13.01163 -12.80850 -12.73896 -12.49357 -12.27536 -12.14667 -12.11516 -11.95448 -11.61936 -11.51196 -11.22234 -11.15253 -10.85863 -10.74774 -10.53462 -10.21429 -9.68694 -8.97194 -7.94231 -5.22939 -1.00877 -0.49411 0.83133 0.87374 1.41132 1.47751 1.50932 1.57091 1.81512 2.29409 2.57147 2.64509 3.01838 3.06145 3.29667 3.39543 3.44332 3.64106 3.73745 3.80994 3.93212 4.12360 4.16070 4.24641 4.38934 4.42674 4.46188 4.53961 4.56543 4.64058 4.67475 4.80120 4.89020 4.90910 4.95738 5.01631 5.10907 5.14664 5.26330 5.34785 5.41970 5.50857 5.56924 5.62617 5.63051 6.23952 6.28472 6.28727 6.54428 6.95931 7.34133 8.13050 8.33860 9.29481 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.002198 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.235645 B =12736.794210 C =14261.379510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.752 5.752 10 C 0.150 3.850 11 C -0.110 4.110 12 C -0.073 4.073 13 C -0.132 4.132 14 C 0.100 3.900 15 N -0.594 5.594 16 C 0.575 3.425 17 O -0.566 6.566 18 C -0.197 4.197 19 C 0.222 3.778 20 N -0.487 5.487 21 C 0.285 3.715 22 N -0.465 5.465 23 H 0.469 0.531 24 N 0.010 4.990 25 N -0.216 5.216 26 C -0.085 4.085 27 C 0.068 3.932 28 C 0.115 3.885 29 C -0.123 4.123 30 H 0.251 0.749 31 H 0.371 0.629 32 H 0.021 0.979 33 H 0.026 0.974 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.217 0.783 42 H 0.164 0.836 43 H 0.083 0.917 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 -24.696 -5.589 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.394 5.394 10 C 0.025 3.975 11 C -0.148 4.148 12 C -0.092 4.092 13 C -0.170 4.170 14 C -0.022 4.022 15 N -0.325 5.325 16 C 0.362 3.638 17 O -0.446 6.446 18 C -0.206 4.206 19 C 0.049 3.951 20 N -0.201 5.201 21 C 0.040 3.960 22 N -0.192 5.192 23 H 0.321 0.679 24 N 0.027 4.973 25 N -0.096 5.096 26 C -0.211 4.211 27 C 0.037 3.963 28 C -0.006 4.006 29 C -0.162 4.162 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.113 0.887 41 H 0.233 0.767 42 H 0.181 0.819 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.072 0.928 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.720 -25.222 -6.973 29.096 hybrid contribution -0.426 1.386 0.433 1.513 sum 12.294 -23.835 -6.540 27.605 Atomic orbital electron populations 1.69815 1.06706 1.26126 1.59668 1.25608 0.96415 1.01275 1.03866 0.85205 0.77195 0.79049 0.78294 1.20321 1.22309 1.20172 1.19634 0.91569 0.85446 1.41021 0.90460 1.42688 1.05673 1.01651 1.89433 1.20916 0.94288 0.84587 0.97745 1.21644 0.97908 0.94040 1.01202 1.21077 0.97053 0.92466 0.98632 1.22070 0.99736 0.97690 0.97517 1.22256 0.91770 0.84355 1.03807 1.48120 1.39828 1.18975 1.25622 1.17871 0.81192 0.82321 0.82391 1.90820 1.42472 1.36277 1.75008 1.20624 0.96697 1.09315 0.93976 1.23672 0.88109 0.86618 0.96737 1.66852 1.38776 1.18793 0.95674 1.19735 0.90376 0.97355 0.88515 1.47547 1.13500 1.55723 1.02456 0.67936 1.81704 0.88855 1.13186 1.13536 1.74894 1.18552 1.12956 1.03233 1.20515 0.94559 1.12933 0.93094 1.21037 1.00883 0.86931 0.87422 1.21726 0.93775 0.98011 0.87102 1.21920 0.97817 0.93448 1.02982 0.94053 0.79738 0.96083 0.95617 0.93355 0.92502 0.89291 0.89894 0.92793 0.87254 0.88717 0.76677 0.81875 0.89828 0.88691 0.92752 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.74 13.06 21.65 0.28 -59.46 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 9 N -0.75 -37.87 5.60 -343.44 -1.92 -39.80 16 10 C 0.15 5.55 6.02 86.38 0.52 6.07 16 11 C -0.11 -3.13 4.80 30.59 0.15 -2.99 16 12 C -0.07 -1.38 2.15 -10.66 -0.02 -1.40 16 13 C -0.13 -2.22 5.16 30.78 0.16 -2.06 16 14 C 0.10 1.06 5.37 86.36 0.46 1.52 16 15 N -0.59 -8.44 2.97 -822.44 -2.45 -10.89 16 16 C 0.57 10.20 7.25 86.75 0.63 10.83 16 17 O -0.57 -14.31 16.47 -3.94 -0.06 -14.37 16 18 C -0.20 -2.91 5.01 -20.03 -0.10 -3.01 16 19 C 0.22 2.42 8.52 85.23 0.73 3.15 16 20 N -0.49 -6.84 10.37 -191.99 -1.99 -8.83 16 21 C 0.29 4.70 8.49 134.01 1.14 5.84 16 22 N -0.46 -6.32 7.53 -55.37 -0.42 -6.74 16 23 H 0.47 2.95 8.96 -213.26 -1.91 1.04 16 24 N 0.01 0.19 13.82 37.02 0.51 0.70 16 25 N -0.22 -4.63 12.40 -52.14 -0.65 -5.28 16 26 C -0.08 -1.61 7.27 39.63 0.29 -1.33 16 27 C 0.07 1.15 9.93 22.96 0.23 1.37 16 28 C 0.12 1.66 6.42 86.36 0.55 2.21 16 29 C -0.12 -2.06 5.36 30.67 0.16 -1.89 16 30 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.37 20.09 7.67 -92.71 -0.71 19.38 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.03 0.93 6.54 -2.38 -0.02 0.91 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.08 1.50 6.52 -2.39 -0.02 1.48 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.82 4.53 -2.39 -0.01 0.81 16 41 H 0.22 0.79 7.05 -2.91 -0.02 0.77 16 42 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.08 1.43 7.03 -2.39 -0.02 1.42 16 44 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.28 376.10 -0.04 -75.32 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -1.57 Total: 20.14 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 6.20 Total: 1.49 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -6.63 Total: -130.29 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.06 Total: -14.37 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -75.28 -0.04 -75.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481999838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.968 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds