Wall clock time and date at job start Wed Apr 1 2020 04:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48505 * 109.47148 * 90.00075 * 3 2 1 5 5 H 1.48493 * 109.47318 * 210.00505 * 3 2 1 6 6 H 1.48503 * 109.46966 * 330.00606 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99673 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00232 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47006 * 174.89524 * 11 10 9 13 13 H 1.08996 * 109.58376 * 298.51315 * 12 11 10 14 14 C 1.53185 * 109.58329 * 58.80111 * 12 11 10 15 15 C 1.53047 * 109.30987 * 174.41846 * 14 12 11 16 16 C 1.53037 * 109.54075 * 298.63510 * 15 14 12 17 17 C 1.53193 * 109.31150 * 61.36095 * 16 15 14 18 18 N 1.46924 * 108.77822 * 305.36811 * 17 16 15 19 19 C 1.34779 * 120.62955 * 233.60811 * 18 17 16 20 20 O 1.21558 * 119.99595 * 182.37425 * 19 18 17 21 21 C 1.47820 * 119.99916 * 2.37279 * 19 18 17 22 22 C 1.41579 * 120.37797 * 326.74729 * 21 19 18 23 23 C 1.34813 * 120.11856 * 179.97438 * 22 21 19 24 24 N 1.36067 * 120.82411 * 0.02909 * 23 22 21 25 25 N 1.40251 * 133.73094 * 180.02562 * 24 23 22 26 26 N 1.28964 * 107.02307 * 179.97438 * 25 24 23 27 27 N 1.28544 * 110.84062 * 0.02562 * 26 25 24 28 28 C 1.32620 * 110.18669 * 359.97438 * 27 26 25 29 29 C 1.38454 * 120.36963 * 146.47141 * 21 19 18 30 30 H 0.97000 * 120.00183 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99936 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47261 * 300.00128 * 10 9 7 33 33 H 1.08998 * 109.47237 * 60.00474 * 10 9 7 34 34 H 1.09000 * 109.46730 * 294.89841 * 11 10 9 35 35 H 1.08998 * 109.46712 * 54.89685 * 11 10 9 36 36 H 1.08997 * 109.50281 * 294.37089 * 14 12 11 37 37 H 1.09000 * 109.50243 * 54.47006 * 14 12 11 38 38 H 1.08999 * 109.45954 * 58.65831 * 15 14 12 39 39 H 1.09000 * 109.46092 * 178.61286 * 15 14 12 40 40 H 1.08997 * 109.50099 * 181.31209 * 16 15 14 41 41 H 1.09000 * 109.49804 * 301.41296 * 16 15 14 42 42 H 1.08999 * 109.58296 * 65.15812 * 17 16 15 43 43 H 1.09002 * 109.58745 * 185.43382 * 17 16 15 44 44 H 1.08002 * 119.93446 * 0.02562 * 22 21 19 45 45 H 1.07993 * 119.58811 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.52661 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 6 6.3804 -3.5107 0.1252 13 1 6.1235 -3.9921 1.0687 14 6 6.0092 -4.4333 -1.0400 15 6 6.8776 -5.6923 -0.9851 16 6 8.3511 -5.3044 -1.1267 17 6 8.7488 -4.3915 0.0375 18 7 7.8255 -3.2494 0.0797 19 6 8.2952 -1.9862 0.0768 20 8 7.5232 -1.0505 0.1556 21 6 9.7492 -1.7385 -0.0221 22 6 10.6706 -2.6416 0.5608 23 6 11.9955 -2.4109 0.4670 24 7 12.4677 -1.3136 -0.1844 25 7 13.7542 -0.8177 -0.4416 26 7 13.6107 0.2746 -1.1120 27 7 12.3665 0.5296 -1.3100 28 6 11.6130 -0.4141 -0.7617 29 6 10.2254 -0.6237 -0.6908 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.8491 -3.0430 0.8875 33 1 3.8485 -3.0417 -0.8925 34 1 5.8945 -1.6986 -0.9337 35 1 5.8656 -1.5446 0.8394 36 1 4.9584 -4.7124 -0.9626 37 1 6.1797 -3.9146 -1.9834 38 1 6.7250 -6.1974 -0.0313 39 1 6.5985 -6.3617 -1.7988 40 1 8.9672 -6.2034 -1.1110 41 1 8.4997 -4.7774 -2.0693 42 1 8.6874 -4.9460 0.9739 43 1 9.7682 -4.0347 -0.1097 44 1 10.3113 -3.5174 1.0809 45 1 12.6907 -3.1053 0.9152 46 1 9.5411 0.0766 -1.1466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482455337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:51 Heat of formation + Delta-G solvation = 167.558056 kcal Electronic energy + Delta-G solvation = -30088.784801 eV Core-core repulsion = 26018.693681 eV Total energy + Delta-G solvation = -4070.091120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -43.89931 -41.30921 -39.08196 -37.78578 -35.62035 -34.55113 -33.68591 -32.99340 -32.21858 -31.12963 -30.94568 -28.37771 -26.55589 -25.67554 -24.70728 -24.18133 -23.36860 -22.30074 -21.50641 -20.90375 -20.02120 -19.21732 -18.44051 -17.48010 -17.37345 -16.95155 -16.30256 -15.96489 -15.66522 -15.53784 -14.97596 -14.82288 -14.44138 -14.15250 -13.81006 -13.73238 -13.58285 -13.54236 -13.42395 -13.04444 -13.00092 -12.72277 -12.57846 -12.26994 -12.08343 -11.71986 -11.60686 -11.54526 -11.36244 -11.17226 -10.98400 -10.94151 -10.59256 -10.55367 -10.40789 -10.10617 -9.54232 -9.25387 -9.21773 -8.90964 -8.79872 -7.15658 -5.71780 -3.06254 -0.44926 -0.20080 1.13758 1.54852 2.02865 2.30283 2.71968 3.12791 3.40796 3.45169 3.51241 3.51997 3.64503 3.83924 4.18426 4.24483 4.31194 4.45247 4.56431 4.61536 4.66209 4.74095 4.84103 4.90323 4.93305 5.01373 5.05269 5.11905 5.28569 5.31700 5.37401 5.52182 5.54583 5.59130 5.69171 5.72455 5.76538 5.87098 5.99216 6.03011 6.16071 6.24915 6.42670 6.84831 6.87697 6.99871 7.72906 7.84647 8.05107 8.48004 9.28260 10.01320 10.22027 11.46688 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002919 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.143745 B = 9590.474232 C =11621.834948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.275 1.275 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.153 3.847 11 C -0.123 4.123 12 C 0.154 3.846 13 H 0.080 0.920 14 C -0.135 4.135 15 C -0.122 4.122 16 C -0.136 4.136 17 C 0.073 3.927 18 N -0.595 5.595 19 C 0.555 3.445 20 O -0.494 6.494 21 C -0.065 4.065 22 C -0.131 4.131 23 C 0.106 3.894 24 N -0.297 5.297 25 N -0.109 5.109 26 N -0.007 5.007 27 N -0.311 5.311 28 C 0.241 3.759 29 C -0.028 4.028 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.189 0.811 45 H 0.188 0.812 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.054 -15.108 0.959 31.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.400 5.400 10 C 0.025 3.975 11 C -0.161 4.161 12 C 0.051 3.949 13 H 0.098 0.902 14 C -0.173 4.173 15 C -0.159 4.159 16 C -0.174 4.174 17 C -0.049 4.049 18 N -0.328 5.328 19 C 0.341 3.659 20 O -0.369 6.369 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.021 4.021 24 N -0.077 5.077 25 N -0.092 5.092 26 N 0.001 4.999 27 N -0.172 5.172 28 C -0.014 4.014 29 C -0.052 4.052 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.122 0.878 44 H 0.205 0.795 45 H 0.205 0.795 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 27.829 -13.929 0.590 31.126 hybrid contribution -0.069 0.490 0.292 0.574 sum 27.761 -13.439 0.881 30.855 Atomic orbital electron populations 1.69706 1.05113 1.25792 1.57859 1.24666 0.95245 0.97259 1.02105 0.86543 0.79348 0.84822 0.77888 1.21085 1.20067 1.21798 1.19059 0.80731 0.94654 1.42775 0.89334 1.42693 1.03929 1.02414 1.91005 1.20759 0.89304 0.89371 0.98087 1.22335 0.94475 0.94552 1.04726 1.21416 0.77021 0.97607 0.98809 0.90214 1.22089 1.00933 0.95501 0.98794 1.21554 0.94158 0.97784 1.02431 1.21933 0.97571 0.99366 0.98512 1.22699 0.94508 0.87814 0.99869 1.48048 1.07904 1.04629 1.72259 1.17874 0.86198 0.83607 0.78256 1.91018 1.55447 1.42952 1.47474 1.20489 0.95447 0.94440 0.97268 1.21723 0.90471 1.01151 1.02083 1.21631 0.96166 0.88407 0.95879 1.49072 1.07508 1.17496 1.33641 1.82816 0.94934 1.09539 1.21900 1.77914 1.10685 1.05740 1.05610 1.75301 0.95834 1.21990 1.24028 1.22755 0.94325 0.88674 0.95600 1.20774 0.89335 0.97351 0.97693 0.93131 0.80449 0.96032 0.95809 0.91103 0.89120 0.89441 0.91237 0.91589 0.91447 0.90579 0.91344 0.90290 0.87803 0.79459 0.79453 0.80297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.98 13.97 55.49 0.78 -29.20 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 23.01 27.74 -169.99 -4.71 18.29 16 4 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.27 -6.86 6.52 56.52 0.37 -6.49 16 6 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -18.66 5.41 -59.91 -0.32 -18.98 16 10 C 0.15 2.92 5.73 -4.04 -0.02 2.89 16 11 C -0.12 -1.90 3.28 -26.73 -0.09 -1.99 16 12 C 0.15 1.63 3.03 -67.60 -0.21 1.42 16 13 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.14 -1.27 4.81 -26.61 -0.13 -1.40 16 15 C -0.12 -0.77 5.88 -26.69 -0.16 -0.92 16 16 C -0.14 -0.62 6.08 -26.61 -0.16 -0.78 16 17 C 0.07 0.30 4.94 -3.71 -0.02 0.28 16 18 N -0.60 -4.92 2.97 -166.34 -0.49 -5.41 16 19 C 0.55 5.59 7.33 -12.34 -0.09 5.50 16 20 O -0.49 -7.18 12.27 5.31 0.07 -7.11 16 21 C -0.06 -0.47 5.54 -104.63 -0.58 -1.05 16 22 C -0.13 -0.47 7.40 -39.52 -0.29 -0.77 16 23 C 0.11 0.43 11.19 -16.89 -0.19 0.24 16 24 N -0.30 -2.56 3.94 -12.43 -0.05 -2.61 16 25 N -0.11 -1.21 13.98 60.35 0.84 -0.37 16 26 N -0.01 -0.08 13.35 60.35 0.81 0.72 16 27 N -0.31 -3.98 12.27 31.03 0.38 -3.60 16 28 C 0.24 2.46 8.02 -156.36 -1.25 1.21 16 29 C -0.03 -0.24 9.72 -38.65 -0.38 -0.62 16 30 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 31 H 0.36 8.99 5.53 -40.82 -0.23 8.76 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.02 0.45 6.84 -51.93 -0.36 0.10 16 34 H 0.07 1.20 7.14 -51.93 -0.37 0.82 16 35 H 0.09 1.57 6.33 -51.93 -0.33 1.24 16 36 H 0.09 0.90 6.86 -51.93 -0.36 0.55 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.10 0.22 3.52 -53.00 -0.19 0.03 16 44 H 0.19 0.09 5.40 -52.49 -0.28 -0.20 16 45 H 0.19 0.04 8.06 -52.49 -0.42 -0.38 16 46 H 0.18 1.56 7.99 -52.48 -0.42 1.14 16 LS Contribution 364.72 15.07 5.50 5.50 Total: -1.00 -37.63 364.72 -6.95 -44.59 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.92 Total: 1.38 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -3.82 Total: -3.19 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 1.94 Total: -59.46 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -4.71 Total: 18.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.63 -6.95 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482455337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.144 kcal (2) G-P(sol) polarization free energy of solvation -37.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds