Wall clock time and date at job start Wed Apr 1 2020 04:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00001 * 2 1 4 4 H 1.48505 * 109.47148 * 90.00075 * 3 2 1 5 5 H 1.48493 * 109.47318 * 210.00505 * 3 2 1 6 6 H 1.48503 * 109.46966 * 330.00606 * 3 2 1 7 7 C 1.38813 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99673 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00232 * 179.97438 * 7 2 1 10 10 C 1.46496 * 120.00086 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47192 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47006 * 174.89524 * 11 10 9 13 13 H 1.08996 * 109.58376 * 298.51315 * 12 11 10 14 14 C 1.53185 * 109.58329 * 58.80111 * 12 11 10 15 15 C 1.53047 * 109.30987 * 174.41846 * 14 12 11 16 16 C 1.53037 * 109.54075 * 298.63510 * 15 14 12 17 17 C 1.53193 * 109.31150 * 61.36095 * 16 15 14 18 18 N 1.46924 * 108.77822 * 305.36811 * 17 16 15 19 19 C 1.34779 * 120.62955 * 233.60811 * 18 17 16 20 20 O 1.21558 * 119.99595 * 182.37425 * 19 18 17 21 21 C 1.47820 * 119.99916 * 2.37279 * 19 18 17 22 22 C 1.41579 * 120.37797 * 326.74729 * 21 19 18 23 23 C 1.34813 * 120.11856 * 179.97438 * 22 21 19 24 24 N 1.36067 * 120.82411 * 0.02909 * 23 22 21 25 25 N 1.40251 * 133.73094 * 180.02562 * 24 23 22 26 26 N 1.28964 * 107.02307 * 179.97438 * 25 24 23 27 27 N 1.28544 * 110.84062 * 0.02562 * 26 25 24 28 28 C 1.32620 * 110.18669 * 359.97438 * 27 26 25 29 29 C 1.38454 * 120.36963 * 146.47141 * 21 19 18 30 30 H 0.97000 * 120.00183 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99936 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47261 * 300.00128 * 10 9 7 33 33 H 1.08998 * 109.47237 * 60.00474 * 10 9 7 34 34 H 1.09000 * 109.46730 * 294.89841 * 11 10 9 35 35 H 1.08998 * 109.46712 * 54.89685 * 11 10 9 36 36 H 1.08997 * 109.50281 * 294.37089 * 14 12 11 37 37 H 1.09000 * 109.50243 * 54.47006 * 14 12 11 38 38 H 1.08999 * 109.45954 * 58.65831 * 15 14 12 39 39 H 1.09000 * 109.46092 * 178.61286 * 15 14 12 40 40 H 1.08997 * 109.50099 * 181.31209 * 16 15 14 41 41 H 1.09000 * 109.49804 * 301.41296 * 16 15 14 42 42 H 1.08999 * 109.58296 * 65.15812 * 17 16 15 43 43 H 1.09002 * 109.58745 * 185.43382 * 17 16 15 44 44 H 1.08002 * 119.93446 * 0.02562 * 22 21 19 45 45 H 1.07993 * 119.58811 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.52661 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5476 1.4403 -0.7001 6 1 1.4475 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6164 -2.1912 -0.0020 12 6 6.3804 -3.5107 0.1252 13 1 6.1235 -3.9921 1.0687 14 6 6.0092 -4.4333 -1.0400 15 6 6.8776 -5.6923 -0.9851 16 6 8.3511 -5.3044 -1.1267 17 6 8.7488 -4.3915 0.0375 18 7 7.8255 -3.2494 0.0797 19 6 8.2952 -1.9862 0.0768 20 8 7.5232 -1.0505 0.1556 21 6 9.7492 -1.7385 -0.0221 22 6 10.6706 -2.6416 0.5608 23 6 11.9955 -2.4109 0.4670 24 7 12.4677 -1.3136 -0.1844 25 7 13.7542 -0.8177 -0.4416 26 7 13.6107 0.2746 -1.1120 27 7 12.3665 0.5296 -1.3100 28 6 11.6130 -0.4141 -0.7617 29 6 10.2254 -0.6237 -0.6908 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3620 -0.0007 32 1 3.8491 -3.0430 0.8875 33 1 3.8485 -3.0417 -0.8925 34 1 5.8945 -1.6986 -0.9337 35 1 5.8656 -1.5446 0.8394 36 1 4.9584 -4.7124 -0.9626 37 1 6.1797 -3.9146 -1.9834 38 1 6.7250 -6.1974 -0.0313 39 1 6.5985 -6.3617 -1.7988 40 1 8.9672 -6.2034 -1.1110 41 1 8.4997 -4.7774 -2.0693 42 1 8.6874 -4.9460 0.9739 43 1 9.7682 -4.0347 -0.1097 44 1 10.3113 -3.5174 1.0809 45 1 12.6907 -3.1053 0.9152 46 1 9.5411 0.0766 -1.1466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482455337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:50 Heat of formation + Delta-G solvation = 140.299627 kcal Electronic energy + Delta-G solvation = -30089.966815 eV Core-core repulsion = 26018.693681 eV Total energy + Delta-G solvation = -4071.273134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.60874 -42.04833 -39.74851 -38.53984 -37.15917 -35.44707 -34.63367 -34.04719 -33.22335 -32.50340 -31.76220 -29.55013 -27.46118 -26.31518 -25.67147 -25.20218 -24.02929 -23.77921 -22.27344 -22.15481 -20.69946 -19.92880 -19.66201 -18.94633 -18.09971 -17.56616 -17.10832 -16.73352 -16.65858 -16.33523 -16.11684 -15.77581 -15.54073 -15.31093 -14.89081 -14.83222 -14.47394 -14.42388 -14.28258 -14.07790 -13.97481 -13.83893 -13.55916 -13.20101 -13.01978 -12.80898 -12.79239 -12.74790 -12.33267 -12.26549 -12.11702 -11.89865 -11.86423 -11.79683 -11.57348 -11.43807 -11.06091 -10.97426 -10.25640 -9.84093 -9.60438 -9.29366 -8.05327 -5.37350 -1.06465 -0.79362 0.56498 0.86642 1.30227 1.36784 1.37291 1.45815 1.59793 2.06690 2.45828 2.48816 2.78735 3.09723 3.26271 3.36013 3.52673 3.68763 3.82610 3.89049 3.92692 4.00041 4.05316 4.13535 4.25301 4.27494 4.39061 4.47337 4.50391 4.53624 4.59896 4.71362 4.72925 4.79276 4.83549 4.92995 4.98625 5.13576 5.20033 5.21290 5.29828 5.39560 5.40350 5.54055 5.64396 5.73761 6.19929 6.27503 6.96737 7.06109 7.07588 7.84855 8.02351 9.16171 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011871 B = 0.002919 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.143745 B = 9590.474232 C =11621.834948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.062 4.062 3 Si 0.951 3.049 4 H -0.278 1.278 5 H -0.262 1.262 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.062 0.938 9 N -0.762 5.762 10 C 0.148 3.852 11 C -0.105 4.105 12 C 0.160 3.840 13 H 0.097 0.903 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.133 4.133 17 C 0.064 3.936 18 N -0.587 5.587 19 C 0.550 3.450 20 O -0.549 6.549 21 C -0.049 4.049 22 C -0.113 4.113 23 C 0.119 3.881 24 N -0.294 5.294 25 N -0.119 5.119 26 N -0.032 5.032 27 N -0.349 5.349 28 C 0.231 3.769 29 C -0.047 4.047 30 H 0.258 0.742 31 H 0.362 0.638 32 H 0.027 0.973 33 H 0.026 0.974 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.129 0.871 44 H 0.235 0.765 45 H 0.239 0.761 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.084 -18.259 2.456 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.204 1.204 5 H -0.187 1.187 6 H -0.218 1.218 7 C -0.364 4.364 8 H 0.080 0.920 9 N -0.408 5.408 10 C 0.022 3.978 11 C -0.143 4.143 12 C 0.057 3.943 13 H 0.114 0.886 14 C -0.172 4.172 15 C -0.156 4.156 16 C -0.171 4.171 17 C -0.055 4.055 18 N -0.319 5.319 19 C 0.338 3.662 20 O -0.427 6.427 21 C -0.061 4.061 22 C -0.135 4.135 23 C -0.007 4.007 24 N -0.074 5.074 25 N -0.102 5.102 26 N -0.025 5.025 27 N -0.211 5.211 28 C -0.022 4.022 29 C -0.071 4.071 30 H 0.067 0.933 31 H 0.195 0.805 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.072 0.928 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.251 0.749 45 H 0.255 0.745 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 30.925 -17.153 2.081 35.425 hybrid contribution -1.120 1.226 -0.136 1.666 sum 29.805 -15.927 1.945 33.850 Atomic orbital electron populations 1.69864 1.06855 1.26636 1.59895 1.25438 0.96105 1.00957 1.02845 0.85465 0.78386 0.80151 0.78142 1.20415 1.18665 1.21823 1.19087 0.82660 0.93606 1.40997 0.92039 1.42818 1.02610 1.04470 1.90862 1.20993 0.91505 0.87129 0.98161 1.22087 0.92209 0.96998 1.03005 1.21213 0.78174 0.94836 1.00103 0.88567 1.22044 1.01034 0.96854 0.97302 1.21548 0.94754 0.95844 1.03412 1.21949 0.96595 1.00585 0.98000 1.23172 0.94448 0.86373 1.01532 1.48112 1.07484 1.05399 1.70895 1.18238 0.86995 0.83533 0.77484 1.90999 1.57012 1.44619 1.50083 1.20346 0.94438 0.94524 0.96749 1.22184 0.89371 1.01161 1.00767 1.22662 0.97223 0.87130 0.93732 1.49244 1.06457 1.18192 1.33461 1.82669 0.96019 1.09371 1.22163 1.77860 1.11089 1.06788 1.06724 1.75170 0.96226 1.23868 1.25820 1.22669 0.94573 0.88887 0.96052 1.20643 0.88667 0.98389 0.99442 0.93278 0.80493 0.95451 0.95559 0.93073 0.90793 0.90924 0.93025 0.90046 0.91254 0.87371 0.92759 0.86737 0.85367 0.74945 0.74476 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.47 13.97 21.65 0.30 -64.17 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.95 48.41 27.74 68.60 1.90 50.32 16 4 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.26 -12.59 6.52 99.48 0.65 -11.94 16 6 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 7 C -0.23 -13.82 10.47 84.03 0.88 -12.94 16 8 H 0.06 3.92 8.06 -2.91 -0.02 3.89 16 9 N -0.76 -38.15 5.41 -343.45 -1.86 -40.00 16 10 C 0.15 5.72 5.73 86.38 0.49 6.22 16 11 C -0.10 -3.25 3.28 30.60 0.10 -3.15 16 12 C 0.16 3.07 3.03 44.97 0.14 3.21 16 13 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.13 -2.31 4.81 30.67 0.15 -2.16 16 15 C -0.12 -1.05 5.88 30.62 0.18 -0.87 16 16 C -0.13 -0.56 6.08 30.67 0.19 -0.37 16 17 C 0.06 0.15 4.94 86.36 0.43 0.57 16 18 N -0.59 -7.82 2.97 -798.45 -2.37 -10.19 16 19 C 0.55 10.13 7.33 86.78 0.64 10.77 16 20 O -0.55 -16.07 12.27 -3.90 -0.05 -16.12 16 21 C -0.05 -0.58 5.54 -19.87 -0.11 -0.69 16 22 C -0.11 -0.20 7.40 22.31 0.17 -0.04 16 23 C 0.12 0.35 11.19 83.25 0.93 1.28 16 24 N -0.29 -4.39 3.94 -193.24 -0.76 -5.15 16 25 N -0.12 -2.52 13.98 37.02 0.52 -2.00 16 26 N -0.03 -0.84 13.35 37.02 0.49 -0.35 16 27 N -0.35 -9.29 12.27 -55.73 -0.68 -9.97 16 28 C 0.23 4.65 8.02 134.06 1.07 5.72 16 29 C -0.05 -0.81 9.72 22.88 0.22 -0.59 16 30 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 31 H 0.36 18.04 5.53 -92.70 -0.51 17.53 16 32 H 0.03 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.03 1.01 6.84 -2.39 -0.02 1.00 16 34 H 0.05 1.77 7.14 -2.39 -0.02 1.76 16 35 H 0.07 2.58 6.33 -2.39 -0.02 2.56 16 36 H 0.07 1.45 6.86 -2.39 -0.02 1.44 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 43 H 0.13 -0.35 3.52 -3.39 -0.01 -0.36 16 44 H 0.23 -1.65 5.40 -2.91 -0.02 -1.67 16 45 H 0.24 -1.66 8.06 -2.91 -0.02 -1.68 16 46 H 0.17 3.20 7.99 -2.91 -0.02 3.18 16 Total: -1.00 -89.36 364.72 3.89 -85.47 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.46 Total: 8.55 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 5.94 Total: 3.62 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -4.36 Total: -131.83 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.05 Total: -16.12 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.90 Total: 50.32 kcal Total: -89.36 3.89 -85.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482455337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.767 kcal (2) G-P(sol) polarization free energy of solvation -89.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds