Wall clock time and date at job start Wed Apr 1 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 120.00306 * 2 1 4 4 H 1.48497 * 109.47179 * 270.00378 * 3 2 1 5 5 H 1.48505 * 109.47116 * 30.00130 * 3 2 1 6 6 H 1.48502 * 109.47286 * 149.99749 * 3 2 1 7 7 C 1.38816 * 119.99764 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99939 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99844 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99925 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47273 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47346 * 295.00261 * 11 10 9 13 13 N 1.46502 * 109.46815 * 55.00460 * 11 10 9 14 14 C 1.34783 * 119.99478 * 244.83017 * 13 11 10 15 15 O 1.21565 * 120.00319 * 354.98478 * 14 13 11 16 16 C 1.47726 * 119.99577 * 174.98542 * 14 13 11 17 17 C 1.40114 * 120.35180 * 359.97438 * 16 14 13 18 18 N 1.31261 * 121.14759 * 180.02562 * 17 16 14 19 19 C 1.32717 * 121.79954 * 0.02562 * 18 17 16 20 20 N 1.37121 * 133.40242 * 179.97438 * 19 18 17 21 21 H 0.97002 * 126.59047 * 0.06668 * 20 19 18 22 22 N 1.40190 * 106.81699 * 180.02562 * 20 19 18 23 23 N 1.28661 * 109.51305 * 0.02562 * 22 20 19 24 24 C 1.35336 * 109.99896 * 0.02562 * 23 22 20 25 25 C 1.39433 * 120.34768 * 180.02562 * 16 14 13 26 26 C 1.53002 * 109.47002 * 174.99852 * 11 10 9 27 27 C 1.54265 * 110.03364 * 297.07379 * 26 11 10 28 28 C 1.54895 * 104.19338 * 217.10515 * 27 26 11 29 29 C 1.54896 * 102.74694 * 37.94312 * 28 27 26 30 30 C 1.53876 * 110.03140 * 179.90246 * 26 11 10 31 31 H 0.96999 * 119.99497 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00597 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47006 * 60.00457 * 10 9 7 34 34 H 1.09004 * 109.47383 * 300.00302 * 10 9 7 35 35 H 0.96997 * 120.00408 * 64.82798 * 13 11 10 36 36 H 1.07997 * 119.42757 * 0.02727 * 17 16 14 37 37 H 1.08000 * 120.95302 * 359.96843 * 25 16 14 38 38 H 1.08999 * 110.01177 * 58.51494 * 26 11 10 39 39 H 1.08999 * 110.48738 * 335.77782 * 27 26 11 40 40 H 1.08994 * 110.48434 * 98.42891 * 27 26 11 41 41 H 1.08997 * 110.75795 * 279.62847 * 28 27 26 42 42 H 1.08995 * 110.75686 * 156.25490 * 28 27 26 43 43 H 1.09004 * 110.48504 * 203.37999 * 29 28 27 44 44 H 1.08996 * 110.59906 * 80.79268 * 29 28 27 45 45 H 1.08998 * 110.03681 * 238.57590 * 30 26 11 46 46 H 1.09004 * 110.03336 * 359.95683 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4970 -4.8139 0.9299 13 7 0.1447 -4.6758 -1.1330 14 6 -1.1681 -4.4648 -0.9125 15 8 -1.6048 -4.4847 0.2219 16 6 -2.0763 -4.2093 -2.0493 17 6 -1.5807 -4.1843 -3.3596 18 7 -2.3735 -3.9583 -4.3811 19 6 -3.6736 -3.7436 -4.2232 20 7 -4.6994 -3.4889 -5.0968 21 1 -4.6329 -3.4189 -6.0620 22 7 -5.8627 -3.3499 -4.3270 23 7 -5.5757 -3.5058 -3.0825 24 6 -4.2521 -3.7497 -2.9398 25 6 -3.4355 -3.9896 -1.8295 26 6 1.8245 -6.1412 -0.1269 27 6 2.5729 -6.1938 -1.4749 28 6 2.4543 -7.6734 -1.9176 29 6 1.0184 -8.0488 -1.4742 30 6 0.8362 -7.3206 -0.1265 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 -0.0005 33 1 2.6845 -3.7146 0.8895 34 1 2.6847 -3.7146 -0.8905 35 1 0.4810 -4.7323 -2.0411 36 1 -0.5282 -4.3538 -3.5322 37 1 -3.8459 -4.0026 -0.8306 38 1 2.5303 -6.2451 0.6972 39 1 2.0946 -5.5384 -2.2027 40 1 3.6190 -5.9183 -1.3413 41 1 3.1911 -8.2907 -1.4036 42 1 2.5605 -7.7628 -2.9987 43 1 0.9301 -9.1269 -1.3402 44 1 0.2876 -7.6945 -2.2011 45 1 1.0628 -7.9974 0.6974 46 1 -0.1855 -6.9516 -0.0359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484000124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:06 Heat of formation + Delta-G solvation = 94.562823 kcal Electronic energy + Delta-G solvation = -30544.464086 eV Core-core repulsion = 26471.207655 eV Total energy + Delta-G solvation = -4073.256431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51996 -40.27314 -38.81611 -37.73881 -35.26761 -34.13796 -33.58020 -31.89658 -31.63723 -30.51799 -29.55266 -28.73168 -26.32649 -25.08550 -24.55115 -23.23341 -22.84327 -21.59522 -21.22674 -20.24621 -19.31864 -18.85997 -18.59839 -17.22772 -16.95474 -16.64951 -16.26944 -15.79003 -15.65668 -14.86350 -14.60957 -14.41764 -14.03979 -13.81546 -13.47732 -13.39493 -13.29218 -13.26988 -13.01237 -12.80633 -12.69713 -12.17138 -12.06671 -11.75769 -11.65665 -11.18776 -11.09904 -11.04674 -10.83771 -10.70409 -10.62976 -10.50455 -10.39010 -10.16118 -10.06862 -9.71333 -9.56559 -9.49963 -9.19564 -8.87707 -8.68664 -6.91068 -5.74384 -3.03777 0.04448 0.52572 1.80769 1.89855 2.83778 3.17447 3.43121 3.48445 3.50655 3.67748 3.69529 4.06831 4.11704 4.49099 4.52537 4.53192 4.61092 4.65340 4.74868 4.88855 5.13997 5.23649 5.39789 5.45541 5.56017 5.56640 5.58705 5.63735 5.66939 5.69097 5.81878 5.88073 5.92019 5.97576 6.03957 6.10773 6.21468 6.26887 6.31642 6.42702 6.45557 6.46702 6.67102 6.89916 7.28212 7.57188 7.68046 7.70722 8.41015 8.43267 9.54992 10.13022 10.47723 11.47531 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006681 B = 0.004718 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4189.958824 B = 5933.553956 C = 9100.076630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.141 3.859 11 C 0.138 3.862 12 H 0.104 0.896 13 N -0.701 5.701 14 C 0.575 3.425 15 O -0.527 6.527 16 C -0.194 4.194 17 C 0.219 3.781 18 N -0.490 5.490 19 C 0.293 3.707 20 N -0.485 5.485 21 H 0.453 0.547 22 N 0.013 4.987 23 N -0.190 5.190 24 C -0.073 4.073 25 C 0.086 3.914 26 C -0.098 4.098 27 C -0.118 4.118 28 C -0.125 4.125 29 C -0.122 4.122 30 C -0.119 4.119 31 H 0.254 0.746 32 H 0.386 0.614 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.395 0.605 36 H 0.177 0.823 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -16.745 -9.252 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.013 3.987 11 C 0.034 3.966 12 H 0.122 0.878 13 N -0.353 5.353 14 C 0.361 3.639 15 O -0.404 6.404 16 C -0.203 4.203 17 C 0.045 3.955 18 N -0.204 5.204 19 C 0.048 3.952 20 N -0.211 5.211 21 H 0.300 0.700 22 N 0.030 4.970 23 N -0.071 5.071 24 C -0.199 4.199 25 C 0.055 3.945 26 C -0.118 4.118 27 C -0.156 4.156 28 C -0.162 4.162 29 C -0.160 4.160 30 C -0.157 4.157 31 H 0.064 0.936 32 H 0.220 0.780 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.231 0.769 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.133 -16.313 -9.258 19.018 hybrid contribution 1.128 1.064 -0.395 1.600 sum -2.006 -15.249 -9.653 18.159 Atomic orbital electron populations 1.69678 1.05040 1.25539 1.57392 1.24735 0.95458 0.97593 1.03001 0.86235 0.78694 0.84091 0.77417 1.21850 1.21825 1.20771 1.19188 0.90923 0.84147 1.42987 0.91270 1.42302 1.06010 0.99646 1.89404 1.21055 0.93230 0.85876 0.98558 1.21417 0.90805 0.93968 0.90449 0.87842 1.45681 1.06715 1.72719 1.10164 1.17549 0.82141 0.76564 0.87676 1.90809 1.76022 1.50826 1.22700 1.20799 0.94660 1.09372 0.95488 1.23027 0.98883 0.87437 0.86103 1.66668 1.00687 1.17620 1.35439 1.19572 0.89579 0.97104 0.88904 1.47479 1.04499 1.58413 1.10674 0.69956 1.81700 1.04013 1.15096 0.96222 1.74872 1.12379 1.10342 1.09510 1.20374 0.91601 1.13097 0.94782 1.21092 0.90328 0.84631 0.98481 1.22096 0.97014 0.94092 0.98574 1.22423 1.00512 0.96128 0.96532 1.22506 0.96825 0.96548 1.00355 1.22333 0.96871 0.99545 0.97238 1.22165 0.99984 0.96381 0.97136 0.93582 0.77980 0.95402 0.95826 0.76930 0.80667 0.81566 0.89782 0.91628 0.91276 0.91709 0.91877 0.92255 0.91950 0.92144 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -17.80 5.43 -59.91 -0.33 -18.13 16 10 C 0.14 2.59 5.84 -4.04 -0.02 2.57 16 11 C 0.14 2.03 2.04 -67.93 -0.14 1.89 16 12 H 0.10 1.79 6.91 -51.93 -0.36 1.43 16 13 N -0.70 -9.59 3.70 -54.78 -0.20 -9.79 16 14 C 0.58 9.06 6.88 -12.38 -0.09 8.98 16 15 O -0.53 -10.13 15.73 5.31 0.08 -10.04 16 16 C -0.19 -2.71 5.88 -104.87 -0.62 -3.32 16 17 C 0.22 2.63 10.69 -17.09 -0.18 2.45 16 18 N -0.49 -6.24 10.37 -12.03 -0.12 -6.36 16 19 C 0.29 3.86 8.49 -155.93 -1.32 2.53 16 20 N -0.49 -5.26 7.53 31.15 0.23 -5.03 16 21 H 0.45 3.18 8.96 -182.53 -1.64 1.54 16 22 N 0.01 0.16 13.82 60.35 0.83 1.00 16 23 N -0.19 -2.75 12.40 32.17 0.40 -2.36 16 24 C -0.07 -1.05 7.27 -84.74 -0.62 -1.67 16 25 C 0.09 1.22 9.75 -38.51 -0.38 0.84 16 26 C -0.10 -1.08 2.82 -89.50 -0.25 -1.34 16 27 C -0.12 -1.14 5.12 -25.07 -0.13 -1.27 16 28 C -0.12 -1.03 6.91 -24.73 -0.17 -1.20 16 29 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 30 C -0.12 -1.23 6.19 -25.61 -0.16 -1.39 16 31 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 32 H 0.39 10.19 6.80 -40.82 -0.28 9.91 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 35 H 0.39 4.42 5.01 -40.82 -0.20 4.22 16 36 H 0.18 1.57 6.40 -52.49 -0.34 1.24 16 37 H 0.17 2.30 7.71 -52.49 -0.40 1.89 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.63 5.96 -51.93 -0.31 0.32 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.83 7.12 -51.93 -0.37 0.46 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -34.14 376.40 -9.41 -43.56 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -7.20 Total: 10.94 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -4.49 Total: 0.66 kcal Atomic # 7 Polarization: -69.68 SS G_CDS: 1.54 Total: -68.14 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.14 -9.41 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484000124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.121 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds