Wall clock time and date at job start Wed Apr 1 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48507 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47481 * 299.99978 * 3 2 1 6 6 H 1.48502 * 109.47186 * 60.00039 * 3 2 1 7 7 C 1.38809 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00132 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99595 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99765 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46969 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47205 * 62.17331 * 11 10 9 13 13 N 1.46502 * 109.46857 * 302.17281 * 11 10 9 14 14 C 1.34779 * 119.99812 * 151.95162 * 13 11 10 15 15 O 1.21571 * 119.99828 * 4.85984 * 14 13 11 16 16 C 1.47710 * 120.00141 * 184.85355 * 14 13 11 17 17 C 1.40125 * 120.35284 * 0.02562 * 16 14 13 18 18 N 1.31255 * 121.14695 * 179.97438 * 17 16 14 19 19 C 1.32713 * 121.80651 * 0.02983 * 18 17 16 20 20 N 1.37119 * 133.40825 * 180.02562 * 19 18 17 21 21 H 0.97004 * 126.58934 * 359.97438 * 20 19 18 22 22 N 1.40192 * 106.82001 * 179.97438 * 20 19 18 23 23 N 1.28662 * 109.51225 * 359.97438 * 22 20 19 24 24 C 1.35341 * 109.99694 * 0.02562 * 23 22 20 25 25 C 1.39430 * 120.35314 * 179.72630 * 16 14 13 26 26 C 1.53000 * 109.46699 * 182.17631 * 11 10 9 27 27 C 1.54265 * 110.03573 * 59.42190 * 26 11 10 28 28 C 1.54893 * 104.19374 * 217.10430 * 27 26 11 29 29 C 1.54886 * 102.75048 * 37.93812 * 28 27 26 30 30 C 1.53868 * 110.03420 * 302.24863 * 26 11 10 31 31 H 0.97011 * 120.00122 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00092 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47075 * 59.99952 * 10 9 7 34 34 H 1.08998 * 109.47149 * 300.00224 * 10 9 7 35 35 H 0.96996 * 120.00344 * 331.68216 * 13 11 10 36 36 H 1.07995 * 119.42055 * 359.97438 * 17 16 14 37 37 H 1.08005 * 120.95277 * 0.02562 * 25 16 14 38 38 H 1.09000 * 110.01262 * 180.86228 * 26 11 10 39 39 H 1.09000 * 110.48480 * 335.77676 * 27 26 11 40 40 H 1.08994 * 110.49082 * 98.42052 * 27 26 11 41 41 H 1.08995 * 110.75092 * 279.62349 * 28 27 26 42 42 H 1.08999 * 110.91141 * 156.32862 * 28 27 26 43 43 H 1.08998 * 110.48768 * 203.37867 * 29 28 27 44 44 H 1.09009 * 110.59766 * 80.79043 * 29 28 27 45 45 H 1.08999 * 110.03458 * 238.57163 * 30 26 11 46 46 H 1.08997 * 110.03255 * 0.02562 * 30 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.4634 -4.7839 -0.9102 13 7 0.1870 -4.7131 1.1677 14 6 -1.0614 -5.2191 1.1220 15 8 -1.4298 -5.8409 0.1445 16 6 -1.9819 -5.0182 2.2596 17 6 -1.5651 -4.3023 3.3898 18 7 -2.3702 -4.1140 4.4092 19 6 -3.6091 -4.5897 4.4191 20 7 -4.6312 -4.5375 5.3317 21 1 -4.6103 -4.1035 6.1990 22 7 -5.7120 -5.2319 4.7705 23 7 -5.3818 -5.6742 3.6083 24 6 -4.1069 -5.3203 3.3235 25 6 -3.2768 -5.5335 2.2177 26 6 1.8280 -6.1440 0.0536 27 6 2.6939 -6.2022 1.3290 28 6 3.9874 -6.9246 0.8773 29 6 4.2147 -6.3599 -0.5469 30 6 2.7949 -6.2443 -1.1391 31 1 -0.4851 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 2.6847 -3.7145 0.8894 34 1 2.6847 -3.7145 -0.8905 35 1 0.5062 -4.2819 1.9757 36 1 -0.5640 -3.8984 3.4225 37 1 -3.6274 -6.0857 1.3582 38 1 1.1282 -6.9795 0.0381 39 1 2.9220 -5.1962 1.6814 40 1 2.1890 -6.7746 2.1071 41 1 3.8362 -8.0035 0.8455 42 1 4.8225 -6.6721 1.5308 43 1 4.8198 -7.0475 -1.1379 44 1 4.6893 -5.3797 -0.4996 45 1 2.5649 -7.1290 -1.7329 46 1 2.7201 -5.3494 -1.7568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484000125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:10 Heat of formation + Delta-G solvation = 93.026094 kcal Electronic energy + Delta-G solvation = -30051.698587 eV Core-core repulsion = 25978.375518 eV Total energy + Delta-G solvation = -4073.323069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.60111 -40.25832 -38.89707 -37.87413 -35.30552 -34.22320 -33.71731 -31.96020 -31.63182 -30.62009 -29.50099 -28.56940 -26.35331 -25.16750 -24.62308 -23.22279 -22.91966 -21.94756 -21.12282 -20.38414 -18.96110 -18.90356 -18.65579 -17.34121 -16.92254 -16.65853 -16.35094 -16.03271 -15.33877 -15.20004 -14.59112 -14.37982 -14.18899 -13.93554 -13.70298 -13.44892 -13.43845 -13.15199 -13.03807 -12.80426 -12.54935 -12.21933 -12.11298 -11.77327 -11.53710 -11.18021 -11.00447 -10.97239 -10.92945 -10.88156 -10.74705 -10.43549 -10.27145 -10.19221 -9.92628 -9.80095 -9.65012 -9.58118 -9.29943 -8.94345 -8.75620 -6.99849 -5.83040 -3.12785 -0.03718 0.42676 1.74001 1.81817 2.73170 3.09960 3.38804 3.44868 3.47105 3.55540 3.63597 3.99328 4.03129 4.40366 4.48647 4.51550 4.71391 4.72291 4.79534 4.90137 5.08002 5.34262 5.39242 5.45161 5.47515 5.55282 5.59665 5.62202 5.73982 5.78982 5.84280 5.88167 5.91522 5.99489 6.07006 6.14166 6.23640 6.28665 6.39111 6.42482 6.45375 6.49926 6.69903 6.85173 7.22948 7.49340 7.63964 7.64846 8.29216 8.34640 9.46900 10.02309 10.37173 11.39087 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.007557 B = 0.003787 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.227808 B = 7391.320413 C =10206.745036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.142 3.858 11 C 0.145 3.855 12 H 0.091 0.909 13 N -0.701 5.701 14 C 0.571 3.429 15 O -0.536 6.536 16 C -0.199 4.199 17 C 0.222 3.778 18 N -0.488 5.488 19 C 0.295 3.705 20 N -0.484 5.484 21 H 0.454 0.546 22 N 0.014 4.986 23 N -0.191 5.191 24 C -0.076 4.076 25 C 0.082 3.918 26 C -0.097 4.097 27 C -0.124 4.124 28 C -0.123 4.123 29 C -0.123 4.123 30 C -0.121 4.121 31 H 0.255 0.745 32 H 0.385 0.615 33 H 0.030 0.970 34 H 0.038 0.962 35 H 0.401 0.599 36 H 0.181 0.819 37 H 0.166 0.834 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.084 -14.340 8.211 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.014 3.986 11 C 0.041 3.959 12 H 0.109 0.891 13 N -0.351 5.351 14 C 0.357 3.643 15 O -0.414 6.414 16 C -0.208 4.208 17 C 0.049 3.951 18 N -0.202 5.202 19 C 0.050 3.950 20 N -0.210 5.210 21 H 0.302 0.698 22 N 0.031 4.969 23 N -0.073 5.073 24 C -0.202 4.202 25 C 0.051 3.949 26 C -0.118 4.118 27 C -0.161 4.161 28 C -0.161 4.161 29 C -0.161 4.161 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.237 0.763 36 H 0.198 0.802 37 H 0.183 0.817 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.474 -14.666 8.416 16.973 hybrid contribution 0.919 1.530 0.216 1.798 sum -0.555 -13.136 8.632 15.728 Atomic orbital electron populations 1.69668 1.05097 1.25595 1.57423 1.24726 0.95454 0.97654 1.02795 0.86163 0.78822 0.84236 0.77204 1.20533 1.21890 1.21899 1.19227 0.91020 0.84007 1.43050 0.91098 1.42370 1.05942 0.99770 1.89572 1.21106 0.93164 0.85033 0.99255 1.21369 0.91254 0.94707 0.88609 0.89070 1.45809 1.12986 1.58621 1.17666 1.17616 0.81663 0.79236 0.85821 1.90787 1.76320 1.40833 1.33434 1.20840 0.96115 1.05764 0.98089 1.23169 0.98118 0.88422 0.85438 1.66710 1.01063 1.22831 1.29552 1.19614 0.90089 0.95566 0.89761 1.47504 1.08706 1.46253 1.18490 0.69836 1.81706 1.06237 1.05976 1.03000 1.74874 1.10792 1.15031 1.06589 1.20386 0.93613 1.07765 0.98403 1.21065 0.89292 0.89864 0.94683 1.22101 0.96908 0.97570 0.95184 1.22529 0.95359 1.01265 0.96992 1.22461 0.97596 0.99451 0.96574 1.22349 0.96816 1.01038 0.95894 1.22212 0.94108 1.02214 0.97364 0.93538 0.78106 0.95255 0.94439 0.76281 0.80185 0.81653 0.90728 0.90417 0.92259 0.92074 0.91925 0.92219 0.91319 0.92104 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.99 13.06 55.49 0.72 -26.27 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.90 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.73 -16.73 5.46 -59.91 -0.33 -17.06 16 10 C 0.14 2.47 5.27 -4.04 -0.02 2.44 16 11 C 0.14 2.15 1.83 -67.93 -0.12 2.03 16 12 H 0.09 1.58 7.55 -51.93 -0.39 1.19 16 13 N -0.70 -9.59 4.20 -54.79 -0.23 -9.82 16 14 C 0.57 8.30 7.76 -12.39 -0.10 8.20 16 15 O -0.54 -9.28 16.06 5.30 0.09 -9.20 16 16 C -0.20 -2.53 5.88 -104.88 -0.62 -3.15 16 17 C 0.22 2.60 10.69 -17.09 -0.18 2.42 16 18 N -0.49 -6.09 10.37 -12.03 -0.12 -6.21 16 19 C 0.29 3.67 8.49 -155.93 -1.32 2.34 16 20 N -0.48 -4.95 7.53 31.15 0.23 -4.71 16 21 H 0.45 3.00 8.96 -182.52 -1.64 1.36 16 22 N 0.01 0.17 13.82 60.35 0.83 1.00 16 23 N -0.19 -2.56 12.40 32.17 0.40 -2.16 16 24 C -0.08 -1.00 7.27 -84.73 -0.62 -1.61 16 25 C 0.08 1.03 9.75 -38.51 -0.38 0.66 16 26 C -0.10 -1.20 2.99 -89.51 -0.27 -1.47 16 27 C -0.12 -1.35 5.83 -25.07 -0.15 -1.49 16 28 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 29 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 30 C -0.12 -1.41 5.93 -25.62 -0.15 -1.56 16 31 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.38 9.50 7.43 -40.82 -0.30 9.20 16 33 H 0.03 0.49 5.98 -51.93 -0.31 0.18 16 34 H 0.04 0.67 6.41 -51.93 -0.33 0.34 16 35 H 0.40 4.90 6.69 -40.82 -0.27 4.62 16 36 H 0.18 1.73 6.40 -52.49 -0.34 1.39 16 37 H 0.17 1.94 7.71 -52.48 -0.40 1.53 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 0.90 5.68 -51.93 -0.30 0.60 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.95 6.17 -51.93 -0.32 0.63 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -31.96 376.81 -9.37 -41.33 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.11 Total: 11.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -4.51 Total: -0.86 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 1.51 Total: -65.23 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.96 -9.37 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484000125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.355 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds