Wall clock time and date at job start Wed Apr 1 2020 04:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00286 * 2 1 4 4 H 1.48495 * 109.47240 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.47039 * 30.00507 * 3 2 1 6 6 H 1.48502 * 109.47260 * 150.00120 * 3 2 1 7 7 C 1.38820 * 119.99587 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99588 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99937 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99700 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47168 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.46917 * 55.00049 * 11 10 9 13 13 C 1.53001 * 109.47222 * 174.99746 * 11 10 9 14 14 C 1.52993 * 109.47220 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47204 * 300.00494 * 14 13 11 16 16 H 1.09003 * 109.46715 * 299.99420 * 15 14 13 17 17 N 1.46500 * 109.47136 * 179.97438 * 15 14 13 18 18 C 1.34773 * 120.00140 * 154.99957 * 17 15 14 19 19 O 1.21563 * 119.99975 * 359.97438 * 18 17 15 20 20 C 1.47731 * 120.00074 * 180.02562 * 18 17 15 21 21 C 1.40116 * 120.35173 * 359.96887 * 20 18 17 22 22 N 1.31251 * 121.14880 * 180.02562 * 21 20 18 23 23 C 1.32722 * 121.80620 * 0.02562 * 22 21 20 24 24 N 1.37110 * 133.40926 * 180.02562 * 23 22 21 25 25 H 0.97002 * 126.59544 * 0.02562 * 24 23 22 26 26 N 1.40195 * 106.81831 * 180.02562 * 24 23 22 27 27 N 1.28668 * 109.50897 * 359.97438 * 26 24 23 28 28 C 1.35332 * 109.99635 * 0.02562 * 27 26 24 29 29 C 1.39427 * 120.35090 * 179.97438 * 20 18 17 30 30 C 1.53000 * 109.47102 * 59.99816 * 15 14 13 31 31 C 1.52992 * 109.46904 * 299.99728 * 30 15 14 32 32 H 0.96997 * 119.99849 * 359.97438 * 1 2 3 33 33 H 0.96995 * 120.00419 * 359.97438 * 9 7 2 34 34 H 1.09002 * 109.47369 * 59.99757 * 10 9 7 35 35 H 1.08997 * 109.47105 * 299.99515 * 10 9 7 36 36 H 1.08997 * 109.46927 * 60.00309 * 13 11 10 37 37 H 1.09005 * 109.47078 * 300.00407 * 13 11 10 38 38 H 1.09001 * 109.47367 * 179.97438 * 14 13 11 39 39 H 1.09014 * 109.47148 * 60.00190 * 14 13 11 40 40 H 0.97009 * 119.99891 * 334.99615 * 17 15 14 41 41 H 1.08006 * 119.42254 * 0.03170 * 21 20 18 42 42 H 1.07995 * 120.95152 * 0.24648 * 29 20 18 43 43 H 1.09001 * 109.46984 * 60.00494 * 30 15 14 44 44 H 1.09005 * 109.46745 * 179.97438 * 30 15 14 45 45 H 1.08997 * 109.47433 * 300.00200 * 31 30 15 46 46 H 1.09000 * 109.47060 * 180.02562 * 31 30 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0016 11 6 1.0636 -4.8198 -0.0022 12 1 0.3798 -4.7127 -0.8443 13 6 1.8244 -6.1412 -0.1280 14 6 0.8302 -7.3041 -0.1280 15 6 0.0354 -7.2956 1.1793 16 1 0.7196 -7.4025 2.0211 17 7 -0.9170 -8.4088 1.1790 18 6 -1.3552 -8.9211 2.3460 19 8 -0.9597 -8.4598 3.3989 20 6 -2.3151 -10.0440 2.3457 21 6 -2.7755 -10.5816 1.1365 22 7 -3.6286 -11.5788 1.1180 23 6 -4.0939 -12.1222 2.2359 24 7 -4.9692 -13.1458 2.4927 25 1 -5.4326 -13.6889 1.8360 26 7 -5.0658 -13.2568 3.8869 27 7 -4.3114 -12.3743 4.4415 28 6 -3.6833 -11.6406 3.4934 29 6 -2.7728 -10.5799 3.5488 30 6 -0.7254 -5.9741 1.3050 31 6 0.2688 -4.8113 1.3051 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3881 -0.0016 34 1 2.6839 -3.7150 0.8888 35 1 2.6851 -3.7142 -0.8911 36 1 2.5082 -6.2483 0.7140 37 1 2.3910 -6.1470 -1.0592 38 1 1.3722 -8.2455 -0.2181 39 1 0.1460 -7.1972 -0.9699 40 1 -1.2323 -8.7771 0.3388 41 1 -2.4219 -10.1683 0.2034 42 1 -2.4387 -10.1835 4.4962 43 1 -1.4096 -5.8673 0.4632 44 1 -1.2920 -5.9683 2.2362 45 1 0.9529 -4.9182 2.1469 46 1 -0.2731 -3.8699 1.3951 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484568904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:37 Heat of formation + Delta-G solvation = 84.910003 kcal Electronic energy + Delta-G solvation = -28610.184893 eV Core-core repulsion = 24536.509884 eV Total energy + Delta-G solvation = -4073.675009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.97686 -40.59907 -39.09378 -38.14362 -35.35674 -34.59401 -33.79081 -32.32996 -31.78817 -30.93166 -30.62867 -28.98382 -25.82000 -25.24699 -24.47374 -23.29408 -22.92432 -22.45716 -21.22701 -20.74855 -19.75353 -19.31255 -18.88115 -17.62318 -17.11306 -16.99579 -16.72326 -16.09311 -15.35440 -14.94106 -14.71153 -14.43574 -14.22866 -14.15035 -13.88147 -13.80103 -13.59130 -13.24179 -13.16405 -13.06646 -12.57465 -12.38752 -12.25415 -12.13264 -11.99525 -11.88459 -11.04235 -11.01737 -10.92903 -10.76272 -10.73136 -10.33010 -10.19197 -10.10666 -10.04222 -9.97436 -9.80356 -9.69638 -9.60002 -9.19601 -8.83345 -6.87301 -5.73634 -3.01341 -0.41765 0.00613 1.38330 1.45224 2.30390 2.62423 3.11377 3.22416 3.45463 3.50640 3.52368 3.59489 3.64302 3.96840 4.04143 4.35677 4.60935 4.62575 4.71190 4.79597 5.01930 5.08493 5.17064 5.27752 5.31883 5.46538 5.49945 5.53657 5.61428 5.62706 5.67551 5.91335 5.99563 6.03120 6.07212 6.22135 6.25853 6.26846 6.34987 6.45509 6.57977 6.75659 6.81105 6.88404 6.99007 7.11928 7.15446 7.73132 7.82391 8.45940 9.56930 10.16312 10.50721 11.49429 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.001682 C = 0.001646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.357204 B =16647.227928 C =17009.795675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.095 4.095 12 H 0.070 0.930 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.145 3.855 16 H 0.092 0.908 17 N -0.718 5.718 18 C 0.568 3.432 19 O -0.524 6.524 20 C -0.206 4.206 21 C 0.214 3.786 22 N -0.487 5.487 23 C 0.294 3.706 24 N -0.482 5.482 25 H 0.455 0.545 26 N 0.021 4.979 27 N -0.189 5.189 28 C -0.074 4.074 29 C 0.086 3.914 30 C -0.127 4.127 31 C -0.107 4.107 32 H 0.254 0.746 33 H 0.384 0.616 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.397 0.603 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 -29.130 0.651 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.114 4.114 12 H 0.088 0.912 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.110 0.890 17 N -0.369 5.369 18 C 0.354 3.646 19 O -0.401 6.401 20 C -0.215 4.215 21 C 0.040 3.960 22 N -0.201 5.201 23 C 0.049 3.951 24 N -0.207 5.207 25 H 0.303 0.697 26 N 0.038 4.962 27 N -0.071 5.071 28 C -0.199 4.199 29 C 0.055 3.945 30 C -0.166 4.166 31 C -0.145 4.145 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.232 0.768 41 H 0.196 0.804 42 H 0.186 0.814 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.972 -29.814 1.894 30.919 hybrid contribution 0.236 1.184 -1.005 1.571 sum -7.736 -28.630 0.888 29.670 Atomic orbital electron populations 1.69654 1.05082 1.25559 1.58033 1.24729 0.95521 0.97644 1.03225 0.86196 0.78663 0.83932 0.77457 1.21805 1.21818 1.20802 1.19247 0.91034 0.84290 1.42311 0.91265 1.42377 1.05845 0.99988 1.89395 1.20686 0.93257 0.85527 0.97646 1.21358 0.97721 0.94271 0.98054 0.91159 1.21469 0.97324 0.93452 1.02339 1.21801 0.98520 0.99431 0.96371 1.21184 0.90089 0.84985 0.99535 0.89020 1.46036 1.46882 1.36215 1.07763 1.17673 0.80646 0.81840 0.84479 1.90847 1.57382 1.60939 1.30907 1.20815 1.04472 1.01921 0.94304 1.23078 0.87601 0.87582 0.97714 1.66683 1.13737 1.12234 1.27472 1.19594 0.92808 0.91113 0.91609 1.47573 1.36704 1.28142 1.08319 0.69673 1.81781 1.15006 1.15222 0.84224 1.74932 1.04262 1.01849 1.26025 1.20415 1.06039 1.03290 0.90187 1.21127 0.86349 0.87061 0.99969 1.21938 0.98636 0.93823 1.02197 1.21490 0.97593 0.97943 0.97485 0.93587 0.78253 0.96403 0.96526 0.91672 0.91400 0.91593 0.91327 0.76801 0.80384 0.81426 0.91833 0.91691 0.92043 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.32 5.33 -59.91 -0.32 -18.64 16 10 C 0.16 3.06 5.65 -4.04 -0.02 3.04 16 11 C -0.10 -1.42 2.23 -90.62 -0.20 -1.62 16 12 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 13 C -0.11 -1.20 5.20 -26.73 -0.14 -1.34 16 14 C -0.12 -1.05 5.39 -26.73 -0.14 -1.19 16 15 C 0.15 1.43 2.45 -67.93 -0.17 1.26 16 16 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 17 N -0.72 -5.37 5.03 -54.79 -0.28 -5.65 16 18 C 0.57 5.34 7.74 -12.38 -0.10 5.24 16 19 O -0.52 -7.04 16.06 5.31 0.09 -6.96 16 20 C -0.21 -1.53 5.88 -104.87 -0.62 -2.14 16 21 C 0.21 1.20 10.69 -17.10 -0.18 1.02 16 22 N -0.49 -3.52 10.37 -12.04 -0.12 -3.64 16 23 C 0.29 2.36 8.49 -155.93 -1.32 1.03 16 24 N -0.48 -3.09 7.52 31.14 0.23 -2.85 16 25 H 0.45 1.31 8.96 -182.52 -1.64 -0.33 16 26 N 0.02 0.18 13.82 60.35 0.83 1.01 16 27 N -0.19 -1.88 12.40 32.17 0.40 -1.48 16 28 C -0.07 -0.67 7.27 -84.74 -0.62 -1.28 16 29 C 0.09 0.71 9.75 -38.52 -0.38 0.33 16 30 C -0.13 -1.54 5.49 -26.73 -0.15 -1.69 16 31 C -0.11 -1.60 5.07 -26.74 -0.14 -1.74 16 32 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 40 H 0.40 1.63 6.64 -40.82 -0.27 1.36 16 41 H 0.18 0.35 6.39 -52.48 -0.34 0.01 16 42 H 0.17 1.32 7.71 -52.49 -0.40 0.91 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -34.91 380.15 -9.62 -44.53 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.47 Total: 4.44 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -4.42 Total: -6.43 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 1.47 Total: -58.78 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.96 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.91 -9.62 -44.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484568904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.437 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds