Wall clock time and date at job start Wed Apr 1 2020 04:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47032 * 270.00092 * 3 2 1 5 5 H 1.48497 * 109.46977 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.47055 * 149.99915 * 3 2 1 7 7 C 1.38810 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99903 * 160.28422 * 7 2 1 9 9 N 1.36935 * 120.00281 * 340.27757 * 7 2 1 10 10 C 1.46503 * 120.00100 * 320.54363 * 9 7 2 11 11 C 1.53003 * 109.47140 * 269.99657 * 10 9 7 12 12 C 1.52995 * 109.47324 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99767 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99737 * 179.97438 * 14 13 12 17 17 C 1.50704 * 109.46803 * 180.02562 * 16 14 13 18 18 N 1.32617 * 125.18435 * 90.03208 * 17 16 14 19 19 C 1.32817 * 109.75674 * 179.97438 * 18 17 16 20 20 N 1.33821 * 132.50656 * 180.28390 * 19 18 17 21 21 C 1.31347 * 120.86612 * 180.24589 * 20 19 18 22 22 C 1.40045 * 120.31295 * 359.44027 * 21 20 19 23 23 C 1.35779 * 119.24108 * 0.27605 * 22 21 20 24 24 N 1.35984 * 119.01899 * 359.97438 * 23 22 21 25 25 N 1.31177 * 125.18726 * 269.99869 * 17 16 14 26 26 C 1.46503 * 120.00132 * 140.53664 * 9 7 2 27 27 C 1.53000 * 117.49486 * 3.29684 * 26 9 7 28 28 C 1.52994 * 117.49744 * 294.67142 * 26 9 7 29 29 H 0.96997 * 120.00105 * 355.02899 * 1 2 3 30 30 H 1.09003 * 109.47240 * 149.99927 * 10 9 7 31 31 H 1.09001 * 109.46967 * 29.99397 * 10 9 7 32 32 H 1.09003 * 109.46834 * 60.00021 * 11 10 9 33 33 H 1.08998 * 109.47006 * 300.00507 * 11 10 9 34 34 H 1.09005 * 109.46975 * 59.99748 * 12 11 10 35 35 H 1.08995 * 109.47133 * 300.00292 * 12 11 10 36 36 H 0.96996 * 120.00305 * 0.02562 * 13 12 11 37 37 H 1.09003 * 109.46795 * 60.00639 * 16 14 13 38 38 H 1.08995 * 109.47587 * 300.00496 * 16 14 13 39 39 H 1.08003 * 119.84626 * 179.74266 * 21 20 19 40 40 H 1.08004 * 120.37919 * 180.30412 * 22 21 20 41 41 H 1.08001 * 120.49473 * 180.02562 * 23 22 21 42 42 H 1.08996 * 115.54620 * 148.99761 * 26 9 7 43 43 H 1.08993 * 117.49937 * 359.97438 * 27 26 9 44 44 H 1.09000 * 117.50030 * 145.01991 * 27 26 9 45 45 H 1.09001 * 117.49749 * 214.97335 * 28 26 9 46 46 H 1.08998 * 117.50183 * 359.97161 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0427 -1.2294 -0.3161 9 7 1.3859 -2.3535 0.3991 10 6 0.4640 -2.3296 1.5375 11 6 1.2392 -2.6056 2.8274 12 6 0.2766 -2.5801 4.0163 13 7 1.0188 -2.8450 5.2513 14 6 0.3723 -2.8710 6.4337 15 8 -0.8240 -2.6756 6.4751 16 6 1.1357 -3.1441 7.7040 17 6 0.1875 -3.1188 8.8751 18 7 -0.4710 -4.1683 9.3480 19 6 -1.2182 -3.8006 10.3826 20 7 -2.0443 -4.4789 11.1878 21 6 -2.6864 -3.8724 12.1599 22 6 -2.5068 -2.5007 12.3777 23 6 -1.6663 -1.8052 11.5694 24 7 -1.0203 -2.4612 10.5687 25 7 -0.1119 -2.0554 9.5825 26 6 1.6396 -3.6091 -0.3117 27 6 2.6702 -3.5849 -1.4424 28 6 1.1797 -3.7018 -1.7680 29 1 -0.4850 0.8368 0.0728 30 1 -0.3003 -3.0948 1.4022 31 1 -0.0097 -1.3500 1.6009 32 1 2.0036 -1.8404 2.9627 33 1 1.7131 -3.5852 2.7640 34 1 -0.4881 -3.3450 3.8812 35 1 -0.1968 -1.6003 4.0795 36 1 1.9756 -3.0009 5.2182 37 1 1.9011 -2.3799 7.8392 38 1 1.6081 -4.1243 7.6405 39 1 -3.3524 -4.4351 12.7973 40 1 -3.0306 -2.0018 13.1798 41 1 -1.5125 -0.7468 11.7194 42 1 1.5779 -4.5130 0.2942 43 1 3.1590 -2.6348 -1.6575 44 1 3.2867 -4.4731 -1.5805 45 1 0.8158 -4.6670 -2.1203 46 1 0.6879 -2.8288 -2.1970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490393947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:32 Heat of formation + Delta-G solvation = 149.883181 kcal Electronic energy + Delta-G solvation = -28326.851385 eV Core-core repulsion = 24255.993825 eV Total energy + Delta-G solvation = -4070.857560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.23706 -39.80647 -38.93521 -37.10715 -35.30381 -34.92965 -33.55184 -32.79058 -31.61441 -31.04893 -30.07788 -28.94208 -25.48725 -25.00859 -24.20324 -23.45042 -21.77772 -21.39298 -20.98965 -20.22027 -19.59270 -18.78999 -18.47259 -17.35036 -16.75475 -16.52109 -16.38557 -15.76028 -15.54486 -15.29058 -14.96824 -14.62381 -14.22930 -13.85106 -13.77274 -13.73232 -13.57507 -13.01611 -12.99049 -12.62707 -12.41910 -12.32840 -12.15855 -11.88528 -11.48203 -11.01174 -10.80807 -10.73358 -10.65484 -10.47861 -10.39959 -10.23269 -10.17490 -10.06028 -9.73137 -9.60527 -9.55722 -9.24065 -9.16773 -8.87497 -8.48078 -6.53186 -5.79130 -3.46368 0.00036 0.32577 1.51313 2.12480 2.66331 2.83351 3.03567 3.31562 3.34791 3.40958 3.42690 3.57894 3.83270 4.09704 4.36291 4.42689 4.57074 4.77107 4.86251 4.95780 5.03325 5.06074 5.18373 5.32331 5.38054 5.66054 5.73488 5.75585 5.86390 5.89084 5.93771 6.02190 6.14669 6.29349 6.37304 6.39649 6.51732 6.66959 6.68904 6.76249 7.02864 7.05913 7.10808 7.26092 7.58745 7.60037 7.62823 7.78540 8.27500 8.48994 9.14558 9.75629 10.34571 11.15400 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.001851 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.534111 B =15121.219962 C =16016.236821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.014 3.986 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.551 5.551 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.122 3.878 13 N -0.721 5.721 14 C 0.518 3.482 15 O -0.534 6.534 16 C -0.055 4.055 17 C 0.302 3.698 18 N -0.511 5.511 19 C 0.442 3.558 20 N -0.454 5.454 21 C 0.205 3.795 22 C -0.227 4.227 23 C 0.175 3.825 24 N -0.326 5.326 25 N -0.320 5.320 26 C 0.120 3.880 27 C -0.196 4.196 28 C -0.222 4.222 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.348 -5.662 25.854 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.187 4.187 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.267 5.267 10 C 0.027 3.973 11 C -0.186 4.186 12 C -0.002 4.002 13 N -0.373 5.373 14 C 0.302 3.698 15 O -0.411 6.411 16 C -0.097 4.097 17 C 0.020 3.980 18 N -0.242 5.242 19 C 0.081 3.919 20 N -0.168 5.168 21 C 0.018 3.982 22 C -0.252 4.252 23 C 0.037 3.963 24 N -0.105 5.105 25 N -0.151 5.151 26 C 0.011 3.989 27 C -0.234 4.234 28 C -0.263 4.263 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.235 0.765 37 H 0.143 0.857 38 H 0.147 0.853 39 H 0.207 0.793 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.103 0.897 43 H 0.115 0.885 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.891 -5.917 25.072 25.830 hybrid contribution 0.708 1.709 0.267 1.869 sum -1.183 -4.208 25.339 25.713 Atomic orbital electron populations 1.70059 1.05512 1.26232 1.50504 1.25260 0.95004 0.98824 0.99572 0.86452 0.79538 0.83776 0.77880 1.21196 1.21450 1.20263 1.18990 0.93251 0.85031 1.41727 0.91948 1.43337 1.50925 1.03098 1.29382 1.20758 0.90535 1.02703 0.83272 1.22458 0.99212 1.01372 0.95529 1.21482 0.95167 1.01413 0.82094 1.46053 1.12280 1.72322 1.06622 1.19990 0.87894 0.77438 0.84517 1.90753 1.14839 1.48624 1.86837 1.20081 0.95648 1.07027 0.86969 1.23523 0.94223 0.85342 0.94868 1.70678 1.14117 1.29007 1.10433 1.22721 0.95535 0.79287 0.94328 1.68009 1.07779 1.35712 1.05268 1.23594 0.91873 0.92095 0.90628 1.21957 1.03167 0.96283 1.03809 1.22191 0.89499 1.00292 0.84352 1.48775 1.29486 1.10737 1.21519 1.78548 1.11993 1.20757 1.03837 1.21242 1.00558 0.90661 0.86415 1.23013 0.92185 1.01737 1.06487 1.23347 0.96806 1.00932 1.05211 0.93492 0.95265 0.88723 0.91459 0.92990 0.91831 0.91443 0.76471 0.85712 0.85284 0.79252 0.80782 0.79999 0.89651 0.88530 0.90869 0.91321 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 11.50 55.49 0.64 -24.20 16 2 C 0.01 0.39 4.98 -17.43 -0.09 0.30 16 3 Si 0.89 21.08 29.60 -169.99 -5.03 16.05 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.81 8.47 -15.06 -0.13 -6.93 16 8 H 0.06 1.64 6.74 -52.49 -0.35 1.29 16 9 N -0.55 -13.17 2.75 -165.66 -0.46 -13.62 16 10 C 0.15 3.42 5.33 -4.04 -0.02 3.40 16 11 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 12 C 0.12 2.00 5.67 -4.04 -0.02 1.98 16 13 N -0.72 -9.68 5.56 -60.30 -0.33 -10.01 16 14 C 0.52 7.69 7.82 -10.98 -0.09 7.60 16 15 O -0.53 -10.55 16.03 5.55 0.09 -10.46 16 16 C -0.05 -0.61 6.33 -29.03 -0.18 -0.79 16 17 C 0.30 4.38 6.59 -157.01 -1.03 3.35 16 18 N -0.51 -8.15 11.25 -11.80 -0.13 -8.28 16 19 C 0.44 6.17 8.99 -323.14 -2.91 3.27 16 20 N -0.45 -5.06 10.48 -13.82 -0.14 -5.21 16 21 C 0.20 1.09 11.27 -17.08 -0.19 0.90 16 22 C -0.23 -0.79 10.06 -39.79 -0.40 -1.19 16 23 C 0.17 1.15 11.32 -16.59 -0.19 0.96 16 24 N -0.33 -3.96 3.91 -13.84 -0.05 -4.01 16 25 N -0.32 -4.59 12.78 32.39 0.41 -4.17 16 26 C 0.12 2.55 6.56 -67.93 -0.45 2.10 16 27 C -0.20 -3.86 9.80 -26.73 -0.26 -4.12 16 28 C -0.22 -4.58 10.36 -26.73 -0.28 -4.86 16 29 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 30 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.10 2.41 5.59 -51.93 -0.29 2.11 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.07 8.47 -40.82 -0.35 3.72 16 37 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.19 0.13 8.06 -52.48 -0.42 -0.29 16 40 H 0.17 -0.18 8.06 -52.48 -0.42 -0.60 16 41 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.10 2.07 6.46 -51.93 -0.34 1.74 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.09 2.18 8.14 -51.93 -0.42 1.75 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -38.24 393.64 -11.84 -50.08 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.38 Total: 4.69 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -6.39 Total: 3.23 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -0.07 Total: -69.52 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.24 -11.84 -50.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490393947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.966 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds