Wall clock time and date at job start Wed Apr 1 2020 04:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99737 * 2 1 4 4 H 1.48498 * 109.47032 * 270.00092 * 3 2 1 5 5 H 1.48497 * 109.46977 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.47055 * 149.99915 * 3 2 1 7 7 C 1.38810 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99903 * 160.28422 * 7 2 1 9 9 N 1.36935 * 120.00281 * 340.27757 * 7 2 1 10 10 C 1.46503 * 120.00100 * 320.54363 * 9 7 2 11 11 C 1.53003 * 109.47140 * 269.99657 * 10 9 7 12 12 C 1.52995 * 109.47324 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47059 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99767 * 179.97438 * 13 12 11 15 15 O 1.21283 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99737 * 179.97438 * 14 13 12 17 17 C 1.50704 * 109.46803 * 180.02562 * 16 14 13 18 18 N 1.32617 * 125.18435 * 90.03208 * 17 16 14 19 19 C 1.32817 * 109.75674 * 179.97438 * 18 17 16 20 20 N 1.33821 * 132.50656 * 180.28390 * 19 18 17 21 21 C 1.31347 * 120.86612 * 180.24589 * 20 19 18 22 22 C 1.40045 * 120.31295 * 359.44027 * 21 20 19 23 23 C 1.35779 * 119.24108 * 0.27605 * 22 21 20 24 24 N 1.35984 * 119.01899 * 359.97438 * 23 22 21 25 25 N 1.31177 * 125.18726 * 269.99869 * 17 16 14 26 26 C 1.46503 * 120.00132 * 140.53664 * 9 7 2 27 27 C 1.53000 * 117.49486 * 3.29684 * 26 9 7 28 28 C 1.52994 * 117.49744 * 294.67142 * 26 9 7 29 29 H 0.96997 * 120.00105 * 355.02899 * 1 2 3 30 30 H 1.09003 * 109.47240 * 149.99927 * 10 9 7 31 31 H 1.09001 * 109.46967 * 29.99397 * 10 9 7 32 32 H 1.09003 * 109.46834 * 60.00021 * 11 10 9 33 33 H 1.08998 * 109.47006 * 300.00507 * 11 10 9 34 34 H 1.09005 * 109.46975 * 59.99748 * 12 11 10 35 35 H 1.08995 * 109.47133 * 300.00292 * 12 11 10 36 36 H 0.96996 * 120.00305 * 0.02562 * 13 12 11 37 37 H 1.09003 * 109.46795 * 60.00639 * 16 14 13 38 38 H 1.08995 * 109.47587 * 300.00496 * 16 14 13 39 39 H 1.08003 * 119.84626 * 179.74266 * 21 20 19 40 40 H 1.08004 * 120.37919 * 180.30412 * 22 21 20 41 41 H 1.08001 * 120.49473 * 180.02562 * 23 22 21 42 42 H 1.08996 * 115.54620 * 148.99761 * 26 9 7 43 43 H 1.08993 * 117.49937 * 359.97438 * 27 26 9 44 44 H 1.09000 * 117.50030 * 145.01991 * 27 26 9 45 45 H 1.09001 * 117.49749 * 214.97335 * 28 26 9 46 46 H 1.08998 * 117.50183 * 359.97161 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0427 -1.2294 -0.3161 9 7 1.3859 -2.3535 0.3991 10 6 0.4640 -2.3296 1.5375 11 6 1.2392 -2.6056 2.8274 12 6 0.2766 -2.5801 4.0163 13 7 1.0188 -2.8450 5.2513 14 6 0.3723 -2.8710 6.4337 15 8 -0.8240 -2.6756 6.4751 16 6 1.1357 -3.1441 7.7040 17 6 0.1875 -3.1188 8.8751 18 7 -0.4710 -4.1683 9.3480 19 6 -1.2182 -3.8006 10.3826 20 7 -2.0443 -4.4789 11.1878 21 6 -2.6864 -3.8724 12.1599 22 6 -2.5068 -2.5007 12.3777 23 6 -1.6663 -1.8052 11.5694 24 7 -1.0203 -2.4612 10.5687 25 7 -0.1119 -2.0554 9.5825 26 6 1.6396 -3.6091 -0.3117 27 6 2.6702 -3.5849 -1.4424 28 6 1.1797 -3.7018 -1.7680 29 1 -0.4850 0.8368 0.0728 30 1 -0.3003 -3.0948 1.4022 31 1 -0.0097 -1.3500 1.6009 32 1 2.0036 -1.8404 2.9627 33 1 1.7131 -3.5852 2.7640 34 1 -0.4881 -3.3450 3.8812 35 1 -0.1968 -1.6003 4.0795 36 1 1.9756 -3.0009 5.2182 37 1 1.9011 -2.3799 7.8392 38 1 1.6081 -4.1243 7.6405 39 1 -3.3524 -4.4351 12.7973 40 1 -3.0306 -2.0018 13.1798 41 1 -1.5125 -0.7468 11.7194 42 1 1.5779 -4.5130 0.2942 43 1 3.1590 -2.6348 -1.6575 44 1 3.2867 -4.4731 -1.5805 45 1 0.8158 -4.6670 -2.1203 46 1 0.6879 -2.8288 -2.1970 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490393947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:31 Heat of formation + Delta-G solvation = 124.465915 kcal Electronic energy + Delta-G solvation = -28327.953561 eV Core-core repulsion = 24255.993825 eV Total energy + Delta-G solvation = -4071.959736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.00758 -40.90249 -39.73093 -38.82928 -36.70259 -35.64807 -35.24938 -33.75269 -33.17560 -31.82843 -31.39989 -30.16963 -27.14274 -25.76885 -25.26874 -24.70734 -23.07298 -22.74733 -22.46278 -21.57675 -21.16787 -19.49699 -19.16057 -18.39795 -18.23822 -17.42991 -17.38009 -17.20030 -16.80090 -16.70924 -16.34566 -15.82986 -15.50723 -15.17703 -14.94167 -14.74459 -14.36802 -14.22328 -13.90206 -13.76372 -13.74606 -13.66428 -13.38273 -13.11052 -13.09167 -12.75548 -12.57429 -12.45361 -12.28235 -12.03496 -11.86291 -11.41589 -11.38976 -11.28352 -11.17925 -11.03173 -10.87646 -10.66061 -10.47657 -10.15054 -9.92690 -8.48426 -7.77506 -5.50009 -0.51404 -0.34725 0.85214 1.28554 1.43492 1.46723 1.52341 1.55309 2.07809 2.31967 2.40783 2.49767 2.79820 3.17097 3.35487 3.42078 3.49579 3.52397 3.79859 3.95773 4.13426 4.19297 4.26996 4.30381 4.34354 4.40470 4.48127 4.53619 4.56946 4.61435 4.76600 4.84359 4.93330 4.96592 5.02771 5.07463 5.09160 5.13578 5.36253 5.38375 5.40717 5.48960 5.57342 5.69028 5.83293 6.36993 6.47778 6.49861 6.77411 7.16591 7.18033 7.85676 8.38158 9.11404 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.001851 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.534111 B =15121.219962 C =16016.236821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.037 4.037 3 Si 0.952 3.048 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.567 5.567 10 C 0.153 3.847 11 C -0.120 4.120 12 C 0.135 3.865 13 N -0.706 5.706 14 C 0.518 3.482 15 O -0.589 6.589 16 C -0.045 4.045 17 C 0.284 3.716 18 N -0.560 5.560 19 C 0.419 3.581 20 N -0.497 5.497 21 C 0.213 3.787 22 C -0.189 4.189 23 C 0.142 3.858 24 N -0.334 5.334 25 N -0.350 5.350 26 C 0.102 3.898 27 C -0.178 4.178 28 C -0.225 4.225 29 H 0.249 0.751 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.421 0.579 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.240 0.760 40 H 0.233 0.767 41 H 0.212 0.788 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 -6.495 28.558 29.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.234 4.234 3 Si 0.780 3.220 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.387 4.387 8 H 0.078 0.922 9 N -0.285 5.285 10 C 0.026 3.974 11 C -0.160 4.160 12 C 0.010 3.990 13 N -0.359 5.359 14 C 0.304 3.696 15 O -0.470 6.470 16 C -0.087 4.087 17 C 0.002 3.998 18 N -0.294 5.294 19 C 0.059 3.941 20 N -0.214 5.214 21 C 0.030 3.970 22 C -0.213 4.213 23 C 0.007 3.993 24 N -0.113 5.113 25 N -0.183 5.183 26 C -0.006 4.006 27 C -0.216 4.216 28 C -0.265 4.265 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.258 0.742 37 H 0.175 0.825 38 H 0.176 0.824 39 H 0.256 0.744 40 H 0.250 0.750 41 H 0.229 0.771 42 H 0.132 0.868 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.055 -6.753 27.821 28.649 hybrid contribution 0.278 1.919 -0.402 1.980 sum -0.777 -4.834 27.419 27.853 Atomic orbital electron populations 1.70198 1.06844 1.26334 1.52556 1.25925 0.95585 1.01616 1.00289 0.85543 0.78688 0.80268 0.77519 1.21396 1.22080 1.19044 1.19175 0.93184 0.86036 1.40302 0.92166 1.43540 1.50921 1.03584 1.30413 1.20662 0.90916 1.00740 0.85035 1.22086 0.98290 1.02143 0.93530 1.21113 0.94915 0.99894 0.83095 1.45808 1.13086 1.71606 1.05368 1.20630 0.87380 0.75952 0.85647 1.90727 1.17466 1.51112 1.87650 1.20186 0.95077 1.09655 0.83755 1.23953 0.94892 0.85241 0.95717 1.70541 1.15943 1.30537 1.12347 1.22940 0.96140 0.80314 0.94717 1.68114 1.09237 1.36851 1.07156 1.24665 0.90090 0.93552 0.88700 1.22687 1.00335 0.95277 1.02954 1.23158 0.90098 1.02196 0.83859 1.48850 1.29600 1.10690 1.22148 1.78341 1.13443 1.21457 1.05017 1.21583 1.01715 0.90449 0.86876 1.23018 0.91732 1.02329 1.04559 1.23264 0.97710 1.00781 1.04780 0.94179 0.95367 0.92317 0.92248 0.90737 0.92516 0.93955 0.74160 0.82504 0.82448 0.74371 0.75048 0.77106 0.86771 0.90731 0.86971 0.88235 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.65 11.50 21.65 0.25 -53.40 16 2 C -0.04 -2.01 4.98 84.86 0.42 -1.58 16 3 Si 0.95 44.21 29.60 68.60 2.03 46.24 16 4 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.26 -13.55 8.47 84.03 0.71 -12.83 16 8 H 0.06 3.17 6.74 -2.92 -0.02 3.15 16 9 N -0.57 -27.20 2.75 -678.03 -1.86 -29.06 16 10 C 0.15 6.92 5.33 86.38 0.46 7.38 16 11 C -0.12 -4.23 5.65 30.59 0.17 -4.05 16 12 C 0.13 4.50 5.67 86.38 0.49 4.99 16 13 N -0.71 -18.59 5.56 -463.06 -2.57 -21.16 16 14 C 0.52 15.56 7.82 87.66 0.69 16.24 16 15 O -0.59 -24.38 16.03 -3.04 -0.05 -24.43 16 16 C -0.05 -0.98 6.33 29.10 0.18 -0.80 16 17 C 0.28 8.52 6.59 138.69 0.91 9.43 16 18 N -0.56 -18.74 11.25 -191.24 -2.15 -20.89 16 19 C 0.42 12.04 8.99 261.60 2.35 14.39 16 20 N -0.50 -10.83 10.48 -197.64 -2.07 -12.91 16 21 C 0.21 1.60 11.27 85.20 0.96 2.56 16 22 C -0.19 -0.53 10.06 22.14 0.22 -0.31 16 23 C 0.14 1.59 11.32 83.48 0.94 2.53 16 24 N -0.33 -8.15 3.91 -197.70 -0.77 -8.92 16 25 N -0.35 -10.36 12.78 -51.44 -0.66 -11.02 16 26 C 0.10 4.16 6.56 44.99 0.30 4.46 16 27 C -0.18 -6.66 9.80 30.60 0.30 -6.36 16 28 C -0.22 -9.05 10.36 30.59 0.32 -8.74 16 29 H 0.25 14.25 8.32 -92.71 -0.77 13.48 16 30 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 31 H 0.06 3.13 5.59 -2.39 -0.01 3.12 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.42 7.75 8.47 -92.71 -0.79 6.97 16 37 H 0.16 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.16 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.24 -0.85 8.06 -2.91 -0.02 -0.87 16 40 H 0.23 -2.06 8.06 -2.91 -0.02 -2.09 16 41 H 0.21 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.07 3.13 6.46 -2.39 -0.02 3.11 16 44 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 45 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 46 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -92.08 393.64 1.81 -90.27 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.23 Total: 17.96 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 9.43 Total: 27.31 kcal Atomic # 7 Polarization: -147.52 SS G_CDS: -9.84 Total: -157.36 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -92.08 1.81 -90.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490393947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.740 kcal (2) G-P(sol) polarization free energy of solvation -92.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds