Wall clock time and date at job start Wed Apr 1 2020 04:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00182 * 0.02562 * 16 15 14 18 18 C 1.47530 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.39248 * 120.24519 * 359.72072 * 18 16 15 20 20 C 1.38450 * 120.26853 * 179.78668 * 19 18 16 21 21 C 1.37634 * 120.80243 * 0.47649 * 20 19 18 22 22 C 1.40075 * 120.15426 * 359.78266 * 21 20 19 23 23 N 1.35402 * 133.03279 * 179.97438 * 22 21 20 24 24 N 1.28661 * 110.10603 * 180.02562 * 23 22 21 25 25 N 1.40250 * 109.43107 * 359.97438 * 24 23 22 26 26 H 0.97006 * 126.66354 * 180.02562 * 25 24 23 27 27 C 1.36976 * 106.67372 * 0.02562 * 25 24 23 28 28 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 29 29 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 30 30 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 32 32 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 33 33 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 34 34 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 35 35 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 36 36 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 37 37 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 38 38 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 39 39 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 40 40 H 1.07994 * 119.86288 * 0.02562 * 19 18 16 41 41 H 1.07998 * 119.59172 * 180.21168 * 20 19 18 42 42 H 1.07998 * 119.92343 * 179.75967 * 21 20 19 43 43 H 1.09002 * 109.49547 * 303.14748 * 28 12 11 44 44 H 1.08990 * 109.49859 * 183.06502 * 28 12 11 45 45 H 1.09001 * 109.62421 * 350.92205 * 29 9 7 46 46 H 1.09004 * 109.62775 * 111.49497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2983 -9.4977 -1.8446 18 6 1.9900 -10.2864 -4.0199 19 6 1.5589 -10.0069 -5.3141 20 6 1.6234 -10.9803 -6.2966 21 6 2.1030 -12.2385 -6.0117 22 6 2.5384 -12.5491 -4.7171 23 7 3.0454 -13.6731 -4.1576 24 7 3.3020 -13.4706 -2.9132 25 7 2.9648 -12.1517 -2.5758 26 1 3.0564 -11.7352 -1.7045 27 6 2.4810 -11.5660 -3.7156 28 6 2.0033 -4.6196 -1.0151 29 6 1.8311 -3.6610 0.1680 30 1 -0.4850 0.8401 0.0004 31 1 0.0843 -1.3448 -1.6648 32 1 -0.6924 -2.6163 -0.6879 33 1 -0.4576 -3.4322 -2.9821 34 1 1.2744 -3.0196 -2.9890 35 1 -0.1811 -5.8894 -3.2168 36 1 1.4641 -5.3596 -3.6417 37 1 2.3911 -6.7989 -1.8480 38 1 0.7458 -7.3288 -1.4230 39 1 1.1560 -7.8207 -4.1735 40 1 1.1763 -9.0257 -5.5534 41 1 1.2892 -10.7506 -7.2976 42 1 2.1434 -12.9882 -6.7881 43 1 2.8148 -4.2685 -1.6525 44 1 2.2376 -5.6171 -0.6437 45 1 2.7856 -3.5347 0.6790 46 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490493145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:08 Heat of formation + Delta-G solvation = 115.750454 kcal Electronic energy + Delta-G solvation = -28923.205693 eV Core-core repulsion = 24850.868027 eV Total energy + Delta-G solvation = -4072.337666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.61445 -40.17444 -38.41652 -37.79462 -35.68454 -34.14314 -33.95170 -31.70443 -31.12082 -30.62786 -30.15366 -28.64995 -26.17759 -24.96247 -23.94267 -23.39198 -22.98880 -22.51268 -21.34610 -21.12177 -19.19967 -18.71660 -18.38962 -17.20163 -16.92067 -16.34035 -16.27513 -15.80420 -15.70614 -15.17144 -14.95939 -14.67032 -14.55603 -14.29244 -13.83769 -13.63662 -13.41831 -13.04970 -12.99556 -12.83975 -12.69005 -12.51232 -12.45716 -11.80179 -11.69150 -11.64504 -11.47282 -11.42269 -11.09667 -10.77811 -10.50943 -10.46400 -10.33410 -10.10325 -9.80212 -9.67915 -9.50862 -9.41791 -8.96303 -8.55010 -7.95625 -6.71003 -5.81917 -3.22979 -0.33890 0.67802 1.45427 2.00415 2.43724 2.63767 3.15941 3.34191 3.42363 3.44436 3.59064 3.96816 4.09891 4.23006 4.31290 4.35115 4.47193 4.55993 4.74772 4.92254 4.99647 5.09395 5.29117 5.35003 5.35408 5.39588 5.49708 5.61629 5.72123 5.76631 5.82112 5.88930 5.93930 6.04569 6.06900 6.15173 6.26827 6.46907 6.53196 6.62426 6.88077 7.02615 7.17581 7.45269 7.47456 7.56046 7.63461 7.73012 7.77445 8.39590 9.17598 9.80795 10.39027 11.27050 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.001777 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.360943 B =15749.745237 C =16258.811534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.596 5.596 10 C 0.177 3.823 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.043 3.957 14 C 0.114 3.886 15 N -0.717 5.717 16 C 0.562 3.438 17 O -0.545 6.545 18 C -0.141 4.141 19 C -0.025 4.025 20 C -0.145 4.145 21 C -0.002 4.002 22 C -0.030 4.030 23 N -0.213 5.213 24 N 0.001 4.999 25 N -0.476 5.476 26 H 0.459 0.541 27 C 0.140 3.860 28 C 0.034 3.966 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.077 0.923 36 H 0.034 0.966 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.400 0.600 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.029 0.971 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.334 -22.080 -15.412 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.051 3.949 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.085 4.085 14 C -0.009 4.009 15 N -0.368 5.368 16 C 0.350 3.650 17 O -0.424 6.424 18 C -0.149 4.149 19 C -0.047 4.047 20 C -0.166 4.166 21 C -0.024 4.024 22 C -0.154 4.154 23 N -0.093 5.093 24 N 0.019 4.981 25 N -0.199 5.199 26 H 0.309 0.691 27 C 0.014 3.986 28 C -0.095 4.095 29 C 0.021 3.979 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.235 0.765 40 H 0.161 0.839 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.696 -23.560 -13.739 27.326 hybrid contribution 0.543 2.423 -0.748 2.593 sum 2.239 -21.137 -14.487 25.723 Atomic orbital electron populations 1.70036 1.05196 1.25384 1.54186 1.25029 0.95331 0.98383 1.01065 0.86223 0.79313 0.83952 0.77293 1.20320 1.21580 1.21691 1.19239 0.92624 0.84736 1.41476 0.91571 1.44136 1.34114 1.01289 1.52349 1.20864 0.89061 0.96552 0.88408 1.22929 0.98716 0.88839 0.98739 1.62040 1.34443 1.05812 1.22991 1.22263 1.00543 0.91474 0.94266 1.21668 1.02496 0.86381 0.90333 1.45819 1.64884 1.11610 1.14501 1.17948 0.77588 0.82065 0.87428 1.90744 1.48960 1.80796 1.21918 1.18944 1.08960 0.91584 0.95398 1.21424 0.92989 0.99792 0.90528 1.20965 1.02775 0.92458 1.00415 1.20703 0.92006 0.96880 0.92856 1.19986 1.09171 0.90111 0.96168 1.74913 1.11130 1.22017 1.01202 1.81646 1.14652 0.94176 1.07610 1.47957 1.49830 1.10101 1.12052 0.69119 1.19010 0.97378 0.94316 0.87913 1.22803 0.89656 0.99841 0.97206 1.20986 0.97888 0.86435 0.92563 0.93649 0.89230 0.95456 0.91988 0.95507 0.90510 0.94821 0.90505 0.90037 0.76459 0.83904 0.83493 0.83634 0.95287 0.91315 0.92548 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 11.15 55.49 0.62 -25.29 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 3 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.84 9.63 -15.06 -0.15 -6.98 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -14.84 3.04 -172.01 -0.52 -15.36 16 10 C 0.18 4.15 5.42 -3.60 -0.02 4.13 16 11 C 0.04 0.67 5.58 -3.70 -0.02 0.65 16 12 N -0.53 -8.63 4.78 -234.33 -1.12 -9.75 16 13 C 0.04 0.51 5.38 -3.82 -0.02 0.49 16 14 C 0.11 1.27 4.93 -4.04 -0.02 1.25 16 15 N -0.72 -6.14 5.51 -61.35 -0.34 -6.48 16 16 C 0.56 5.84 7.76 -12.47 -0.10 5.74 16 17 O -0.55 -7.41 15.28 5.28 0.08 -7.33 16 18 C -0.14 -1.18 5.88 -104.92 -0.62 -1.80 16 19 C -0.03 -0.12 9.53 -39.13 -0.37 -0.49 16 20 C -0.15 -0.56 9.98 -39.72 -0.40 -0.96 16 21 C 0.00 -0.01 10.09 -39.11 -0.39 -0.41 16 22 C -0.03 -0.29 7.26 -84.76 -0.62 -0.90 16 23 N -0.21 -2.39 12.40 32.15 0.40 -1.99 16 24 N 0.00 0.01 13.83 60.35 0.83 0.85 16 25 N -0.48 -5.03 7.32 32.50 0.24 -4.79 16 26 H 0.46 4.46 7.72 -182.48 -1.41 3.05 16 27 C 0.14 1.40 6.93 -83.92 -0.58 0.82 16 28 C 0.03 0.59 5.04 -3.71 -0.02 0.57 16 29 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 30 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.09 2.32 6.12 -51.93 -0.32 2.01 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 37 H 0.08 0.96 6.18 -51.92 -0.32 0.64 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.40 2.12 6.50 -40.82 -0.27 1.85 16 40 H 0.14 0.26 6.39 -52.49 -0.34 -0.08 16 41 H 0.15 0.11 8.06 -52.49 -0.42 -0.31 16 42 H 0.15 0.48 8.06 -52.49 -0.42 0.06 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 1.03 5.73 -51.93 -0.30 0.73 16 45 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -33.52 373.19 -9.77 -43.29 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.13 Total: -0.28 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.43 Total: 5.11 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: 0.11 Total: -62.82 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.08 Total: -7.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.52 -9.77 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490493145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.042 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds