Wall clock time and date at job start Wed Apr 1 2020 04:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47149 * 300.00253 * 3 2 1 6 6 H 1.48503 * 109.47120 * 59.99769 * 3 2 1 7 7 C 1.38807 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00499 * 197.02522 * 7 2 1 9 9 N 1.36941 * 119.99583 * 17.02141 * 7 2 1 10 10 C 1.47079 * 120.88448 * 26.58782 * 9 7 2 11 11 C 1.53237 * 108.52132 * 128.78817 * 10 9 7 12 12 N 1.46902 * 109.33805 * 53.83315 * 11 10 9 13 13 C 1.46899 * 110.99712 * 172.74361 * 12 11 10 14 14 C 1.53001 * 109.47218 * 170.00213 * 13 12 11 15 15 N 1.46498 * 109.47542 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00107 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00182 * 0.02562 * 16 15 14 18 18 C 1.47530 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.39248 * 120.24519 * 359.72072 * 18 16 15 20 20 C 1.38450 * 120.26853 * 179.78668 * 19 18 16 21 21 C 1.37634 * 120.80243 * 0.47649 * 20 19 18 22 22 C 1.40075 * 120.15426 * 359.78266 * 21 20 19 23 23 N 1.35402 * 133.03279 * 179.97438 * 22 21 20 24 24 N 1.28661 * 110.10603 * 180.02562 * 23 22 21 25 25 N 1.40250 * 109.43107 * 359.97438 * 24 23 22 26 26 H 0.97006 * 126.66354 * 180.02562 * 25 24 23 27 27 C 1.36976 * 106.67372 * 0.02562 * 25 24 23 28 28 C 1.46891 * 111.27100 * 296.89049 * 12 11 10 29 29 C 1.47083 * 120.88221 * 206.56035 * 9 7 2 30 30 H 0.97006 * 119.99914 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.62505 * 9.08343 * 10 9 7 32 32 H 1.08998 * 109.78944 * 248.60007 * 10 9 7 33 33 H 1.09004 * 109.49060 * 173.79056 * 11 10 9 34 34 H 1.08999 * 109.49752 * 293.87257 * 11 10 9 35 35 H 1.09008 * 109.47403 * 289.99718 * 13 12 11 36 36 H 1.08994 * 109.47392 * 49.99848 * 13 12 11 37 37 H 1.09008 * 109.46529 * 300.00040 * 14 13 12 38 38 H 1.08994 * 109.47237 * 59.99540 * 14 13 12 39 39 H 0.97001 * 119.99473 * 0.02562 * 15 14 13 40 40 H 1.07994 * 119.86288 * 0.02562 * 19 18 16 41 41 H 1.07998 * 119.59172 * 180.21168 * 20 19 18 42 42 H 1.07998 * 119.92343 * 179.75967 * 21 20 19 43 43 H 1.09002 * 109.49547 * 303.14748 * 28 12 11 44 44 H 1.08990 * 109.49859 * 183.06502 * 28 12 11 45 45 H 1.09001 * 109.62421 * 350.92205 * 29 9 7 46 46 H 1.09004 * 109.62775 * 111.49497 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2744 9 7 1.3705 -2.3622 -0.3461 10 6 0.2049 -2.3426 -1.2429 11 6 0.4412 -3.3530 -2.3704 12 7 0.7561 -4.6651 -1.7897 13 6 0.8204 -5.6997 -2.8306 14 6 1.3895 -6.9886 -2.2341 15 7 1.4531 -8.0206 -3.2720 16 6 1.9254 -9.2473 -2.9745 17 8 2.2983 -9.4977 -1.8446 18 6 1.9900 -10.2864 -4.0199 19 6 1.5589 -10.0069 -5.3141 20 6 1.6234 -10.9803 -6.2966 21 6 2.1030 -12.2385 -6.0117 22 6 2.5384 -12.5491 -4.7171 23 7 3.0454 -13.6731 -4.1576 24 7 3.3020 -13.4706 -2.9132 25 7 2.9648 -12.1517 -2.5758 26 1 3.0564 -11.7352 -1.7045 27 6 2.4810 -11.5660 -3.7156 28 6 2.0033 -4.6196 -1.0151 29 6 1.8311 -3.6610 0.1680 30 1 -0.4850 0.8401 0.0004 31 1 0.0843 -1.3448 -1.6648 32 1 -0.6924 -2.6163 -0.6879 33 1 -0.4576 -3.4322 -2.9821 34 1 1.2744 -3.0196 -2.9890 35 1 -0.1811 -5.8894 -3.2168 36 1 1.4641 -5.3596 -3.6417 37 1 2.3911 -6.7989 -1.8480 38 1 0.7458 -7.3288 -1.4230 39 1 1.1560 -7.8207 -4.1735 40 1 1.1763 -9.0257 -5.5534 41 1 1.2892 -10.7506 -7.2976 42 1 2.1434 -12.9882 -6.7881 43 1 2.8148 -4.2685 -1.6525 44 1 2.2376 -5.6171 -0.6437 45 1 2.7856 -3.5347 0.6790 46 1 1.0921 -4.0634 0.8609 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490493145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:06 Heat of formation + Delta-G solvation = 89.210138 kcal Electronic energy + Delta-G solvation = -28924.356568 eV Core-core repulsion = 24850.868027 eV Total energy + Delta-G solvation = -4073.488541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.26162 -40.96892 -39.78126 -38.36702 -36.95228 -35.50301 -34.62580 -33.33368 -32.15331 -31.57280 -31.18252 -29.91363 -27.69338 -25.67382 -25.27177 -24.45985 -24.03197 -23.55166 -22.54357 -21.88308 -20.81777 -19.44239 -18.96928 -18.72237 -17.82802 -17.29988 -17.01259 -16.91703 -16.57036 -16.33702 -15.97502 -15.78573 -15.54392 -15.45841 -15.31783 -15.12199 -14.91604 -14.56787 -14.08329 -13.57485 -13.27037 -13.18585 -13.10289 -13.06105 -13.02441 -12.95423 -12.62785 -12.44607 -12.35684 -12.33848 -12.27202 -12.02858 -11.91192 -11.50884 -11.44938 -11.18896 -10.60215 -10.29200 -10.04892 -9.52166 -9.27880 -8.68902 -7.88707 -5.33198 -0.88108 0.11837 0.80781 1.34525 1.45398 1.47231 1.57815 1.76860 1.87609 2.49993 2.61439 2.96336 3.09090 3.26766 3.45040 3.64481 3.67012 3.68284 3.78085 3.81712 4.06940 4.14217 4.28791 4.34215 4.44500 4.51168 4.56772 4.60777 4.66705 4.70188 4.79287 4.85899 4.90498 4.94768 5.04320 5.11880 5.17222 5.20989 5.25032 5.37121 5.59082 5.60668 5.70281 5.83711 6.12659 6.22701 6.36674 6.39239 6.76507 7.04319 7.12957 7.83185 8.36935 9.18141 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029611 B = 0.001777 C = 0.001722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.360943 B =15749.745237 C =16258.811534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.293 1.293 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.182 3.818 11 C 0.054 3.946 12 N -0.541 5.541 13 C 0.051 3.949 14 C 0.124 3.876 15 N -0.700 5.700 16 C 0.560 3.440 17 O -0.587 6.587 18 C -0.167 4.167 19 C 0.001 3.999 20 C -0.128 4.128 21 C 0.000 4.000 22 C -0.051 4.051 23 N -0.229 5.229 24 N -0.032 5.032 25 N -0.483 5.483 26 H 0.457 0.543 27 C 0.122 3.878 28 C 0.049 3.951 29 C 0.142 3.858 30 H 0.251 0.749 31 H 0.058 0.942 32 H -0.002 1.002 33 H 0.090 0.910 34 H 0.025 0.975 35 H 0.100 0.900 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.182 0.818 41 H 0.193 0.807 42 H 0.171 0.829 43 H 0.027 0.973 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -22.286 -19.140 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.220 1.220 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.339 5.339 10 C 0.056 3.944 11 C -0.075 4.075 12 N -0.266 5.266 13 C -0.077 4.077 14 C 0.000 4.000 15 N -0.353 5.353 16 C 0.349 3.651 17 O -0.469 6.469 18 C -0.174 4.174 19 C -0.021 4.021 20 C -0.149 4.149 21 C -0.022 4.022 22 C -0.176 4.176 23 N -0.108 5.108 24 N -0.013 5.013 25 N -0.206 5.206 26 H 0.306 0.694 27 C -0.004 4.004 28 C -0.080 4.080 29 C 0.016 3.984 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.016 0.984 33 H 0.108 0.892 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.258 0.742 40 H 0.199 0.801 41 H 0.210 0.790 42 H 0.189 0.811 43 H 0.045 0.955 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 1.472 -23.807 -17.511 29.590 hybrid contribution 0.551 2.466 0.341 2.549 sum 2.023 -21.342 -17.170 27.466 Atomic orbital electron populations 1.70191 1.06579 1.25826 1.55505 1.25787 0.96116 1.01448 1.01348 0.85196 0.78493 0.79806 0.76864 1.19282 1.21341 1.22039 1.19549 0.92844 0.85988 1.40949 0.91663 1.44426 1.34314 1.02001 1.53128 1.20666 0.87692 0.96668 0.89392 1.22578 0.99941 0.88501 0.96466 1.61913 1.34071 1.05819 1.24842 1.22273 1.02443 0.89813 0.93127 1.21364 1.01223 0.86733 0.90657 1.45544 1.64394 1.10471 1.14898 1.18294 0.76831 0.82648 0.87332 1.90727 1.50838 1.81538 1.23814 1.18917 1.11613 0.90443 0.96474 1.21980 0.89767 1.01587 0.88751 1.21511 1.00513 0.90897 1.01980 1.21205 0.90780 0.98517 0.91708 1.20493 1.10093 0.89387 0.97650 1.74816 1.11465 1.23206 1.01338 1.81585 1.16658 0.94972 1.08112 1.47968 1.50172 1.10041 1.12433 0.69373 1.19432 0.97887 0.95343 0.87772 1.22564 0.90032 0.99677 0.95720 1.21134 0.97273 0.85774 0.94233 0.94010 0.92319 0.98389 0.89212 0.95679 0.88140 0.93056 0.91917 0.91651 0.74191 0.80063 0.78960 0.81120 0.95520 0.89006 0.92511 0.96814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 11.15 21.65 0.24 -54.81 16 2 C -0.05 -2.88 4.93 84.86 0.42 -2.46 16 3 Si 0.97 44.59 29.59 68.60 2.03 46.62 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 7 C -0.26 -14.55 9.63 84.03 0.81 -13.74 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 9 N -0.61 -31.14 3.04 -698.12 -2.12 -33.26 16 10 C 0.18 8.66 5.42 86.35 0.47 9.13 16 11 C 0.05 1.89 5.58 86.38 0.48 2.37 16 12 N -0.54 -16.55 4.78 -895.28 -4.28 -20.83 16 13 C 0.05 1.01 5.38 86.30 0.46 1.48 16 14 C 0.12 2.46 4.93 86.38 0.43 2.88 16 15 N -0.70 -9.78 5.51 -466.27 -2.57 -12.34 16 16 C 0.56 10.77 7.76 86.69 0.67 11.45 16 17 O -0.59 -16.13 15.28 -4.01 -0.06 -16.19 16 18 C -0.17 -2.44 5.88 -20.06 -0.12 -2.56 16 19 C 0.00 0.01 9.53 22.56 0.22 0.22 16 20 C -0.13 -0.28 9.98 22.18 0.22 -0.06 16 21 C 0.00 0.00 10.09 22.57 0.23 0.23 16 22 C -0.05 -0.92 7.26 39.58 0.29 -0.63 16 23 N -0.23 -5.29 12.40 -52.20 -0.65 -5.93 16 24 N -0.03 -0.79 13.83 37.02 0.51 -0.28 16 25 N -0.48 -10.89 7.32 -51.10 -0.37 -11.26 16 26 H 0.46 9.90 7.72 -213.22 -1.65 8.25 16 27 C 0.12 2.40 6.93 39.41 0.27 2.67 16 28 C 0.05 1.62 5.04 86.38 0.44 2.06 16 29 C 0.14 5.98 6.69 86.35 0.58 6.56 16 30 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.06 3.13 6.12 -2.39 -0.01 3.12 16 32 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 33 H 0.09 2.63 8.11 -2.38 -0.02 2.61 16 34 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.05 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.06 1.45 6.18 -2.38 -0.01 1.43 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.42 2.35 6.50 -92.71 -0.60 1.75 16 40 H 0.18 -0.58 6.39 -2.91 -0.02 -0.60 16 41 H 0.19 -1.19 8.06 -2.91 -0.02 -1.21 16 42 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 2.62 5.73 -2.39 -0.01 2.60 16 45 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 46 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -78.52 373.19 -2.61 -81.13 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -1.20 Total: 7.57 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 5.86 Total: 19.59 kcal Atomic # 7 Polarization: -129.49 SS G_CDS: -9.23 Total: -138.72 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.06 Total: -16.19 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -78.52 -2.61 -81.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490493145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.340 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds