Wall clock time and date at job start Wed Apr 1 2020 04:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48503 * 109.46646 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46973 * 299.99403 * 3 2 1 6 6 H 1.48493 * 109.47407 * 59.99827 * 3 2 1 7 7 C 1.38810 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 197.03265 * 7 2 1 9 9 N 1.36935 * 119.99739 * 17.02657 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.58072 * 9 7 2 11 11 C 1.53244 * 108.51987 * 231.16929 * 10 9 7 12 12 N 1.46899 * 109.33800 * 306.16798 * 11 10 9 13 13 C 1.46903 * 111.00119 * 187.25539 * 12 11 10 14 14 C 1.52999 * 109.47244 * 170.00032 * 13 12 11 15 15 N 1.46495 * 109.47079 * 179.97438 * 14 13 12 16 16 C 1.34782 * 120.00240 * 179.97438 * 15 14 13 17 17 O 1.21573 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.47682 * 120.00101 * 180.02562 * 16 15 14 19 19 C 1.39980 * 120.38812 * 0.02562 * 18 16 15 20 20 N 1.31381 * 121.16228 * 180.02562 * 19 18 16 21 21 C 1.32548 * 121.79366 * 359.97438 * 20 19 18 22 22 N 1.37586 * 133.56463 * 180.02562 * 21 20 19 23 23 H 0.96994 * 126.23603 * 0.02562 * 22 21 20 24 24 C 1.36166 * 107.51954 * 180.02562 * 22 21 20 25 25 N 1.30058 * 110.11742 * 359.97438 * 24 22 21 26 26 C 1.35783 * 109.43172 * 0.02562 * 25 24 22 27 27 C 1.39486 * 133.74405 * 179.97438 * 26 25 24 28 28 C 1.46904 * 111.26836 * 63.10706 * 12 11 10 29 29 C 1.47079 * 120.88278 * 26.56315 * 9 7 2 30 30 H 0.97004 * 120.00020 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.62805 * 111.45820 * 10 9 7 32 32 H 1.08998 * 109.78857 * 350.96887 * 10 9 7 33 33 H 1.09003 * 109.49170 * 186.21471 * 11 10 9 34 34 H 1.08988 * 109.49632 * 66.12915 * 11 10 9 35 35 H 1.08998 * 109.46983 * 50.00535 * 13 12 11 36 36 H 1.09001 * 109.47158 * 290.00048 * 13 12 11 37 37 H 1.09004 * 109.46917 * 59.99915 * 14 13 12 38 38 H 1.09001 * 109.47056 * 300.00078 * 14 13 12 39 39 H 0.96999 * 120.00230 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.41928 * 359.74019 * 19 18 16 41 41 H 1.08000 * 124.94091 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.97385 * 359.97438 * 27 26 25 43 43 H 1.08996 * 109.49319 * 56.85593 * 28 12 11 44 44 H 1.09003 * 109.49006 * 176.93276 * 28 12 11 45 45 H 1.08995 * 109.62795 * 248.54505 * 29 9 7 46 46 H 1.09004 * 109.62803 * 9.12166 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2745 9 7 1.3706 -2.3622 -0.3462 10 6 1.8309 -3.6609 0.1683 11 6 2.0025 -4.6199 -1.0146 12 7 0.7550 -4.6654 -1.7889 13 6 0.8187 -5.7004 -2.8295 14 6 -0.5688 -5.8901 -3.4457 15 7 -0.5052 -6.9218 -4.4838 16 6 -1.6167 -7.2597 -5.1672 17 8 -2.6720 -6.7080 -4.9223 18 6 -1.5526 -8.3002 -6.2133 19 6 -0.3419 -8.9410 -6.5014 20 7 -0.2675 -9.8682 -7.4291 21 6 -1.3281 -10.2396 -8.1321 22 7 -1.5260 -11.1602 -9.1352 23 1 -0.8515 -11.7396 -9.5229 24 6 -2.8411 -11.1097 -9.4843 25 7 -3.4615 -10.2223 -8.7638 26 6 -2.5834 -9.6442 -7.9045 27 6 -2.6992 -8.6555 -6.9274 28 6 0.4404 -3.3533 -2.3699 29 6 0.2047 -2.3425 -1.2427 30 1 -0.4850 0.8401 -0.0004 31 1 1.0920 -4.0629 0.8614 32 1 2.7849 -3.5375 0.6810 33 1 2.2365 -5.6176 -0.6430 34 1 2.8138 -4.2693 -1.6523 35 1 1.1515 -6.6396 -2.3878 36 1 1.5215 -5.3939 -3.6043 37 1 -0.9018 -4.9508 -3.8873 38 1 -1.2716 -6.1966 -2.6709 39 1 0.3367 -7.3623 -4.6788 40 1 0.5476 -8.6651 -5.9545 41 1 -3.3020 -11.7181 -10.2484 42 1 -3.6477 -8.1787 -6.7287 43 1 1.2735 -3.0204 -2.9889 44 1 -0.4586 -3.4325 -2.9813 45 1 -0.6905 -2.6177 -0.6852 46 1 0.0843 -1.3447 -1.6648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490493638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:20 Heat of formation + Delta-G solvation = 93.521027 kcal Electronic energy + Delta-G solvation = -28579.347922 eV Core-core repulsion = 24506.046315 eV Total energy + Delta-G solvation = -4073.301607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.89371 -40.20217 -38.49221 -38.05317 -35.51920 -34.19430 -34.02605 -31.95806 -31.44746 -30.50189 -29.93673 -28.73698 -26.10880 -24.65575 -24.30379 -23.20998 -22.57583 -22.29451 -21.37352 -20.92154 -19.21454 -19.11224 -18.38425 -17.44206 -16.85410 -16.55272 -16.27460 -15.81240 -15.59591 -14.91981 -14.78688 -14.56511 -14.39873 -14.30862 -13.86826 -13.67461 -13.56713 -13.45042 -13.40343 -13.07517 -12.92345 -12.52288 -11.71192 -11.67041 -11.60203 -11.43041 -11.30983 -11.05665 -10.75008 -10.47019 -10.38798 -10.28063 -10.04776 -9.74776 -9.72647 -9.60976 -9.45816 -9.19336 -9.08713 -8.49996 -7.89213 -6.65643 -5.76547 -3.17862 0.22978 0.31962 1.95006 2.18584 2.59721 2.78749 3.38206 3.42670 3.46003 3.48014 3.53159 3.83631 4.12573 4.29814 4.33134 4.48717 4.51573 4.53466 4.78902 4.98467 5.15010 5.19289 5.40795 5.42769 5.49903 5.50627 5.57770 5.81828 5.88230 5.90667 5.95539 6.03954 6.11019 6.19609 6.27615 6.33610 6.47137 6.54352 6.69251 6.93132 7.08387 7.21648 7.24177 7.26083 7.54061 7.64412 7.70611 7.82682 7.97779 8.44838 9.22669 9.86111 10.44441 11.32242 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.001674 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.833975 B =16720.402354 C =17097.471037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.148 3.852 11 C 0.046 3.954 12 N -0.529 5.529 13 C 0.044 3.956 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.568 3.432 17 O -0.528 6.528 18 C -0.197 4.197 19 C 0.175 3.825 20 N -0.484 5.484 21 C 0.255 3.745 22 N -0.588 5.588 23 H 0.431 0.569 24 C 0.277 3.723 25 N -0.479 5.479 26 C -0.007 4.007 27 C 0.050 3.950 28 C 0.031 3.969 29 C 0.177 3.823 30 H 0.253 0.747 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.397 0.603 40 H 0.170 0.830 41 H 0.229 0.771 42 H 0.158 0.842 43 H 0.026 0.974 44 H 0.065 0.935 45 H 0.028 0.972 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 -25.270 -19.221 31.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.021 3.979 11 C -0.083 4.083 12 N -0.254 5.254 13 C -0.085 4.085 14 C -0.002 4.002 15 N -0.374 5.374 16 C 0.353 3.647 17 O -0.404 6.404 18 C -0.205 4.205 19 C 0.005 3.995 20 N -0.197 5.197 21 C 0.018 3.982 22 N -0.203 5.203 23 H 0.271 0.729 24 C -0.011 4.011 25 N -0.198 5.198 26 C -0.127 4.127 27 C 0.022 3.978 28 C -0.098 4.098 29 C 0.051 3.949 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.232 0.768 40 H 0.187 0.813 41 H 0.245 0.755 42 H 0.176 0.824 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.102 -24.997 -18.918 31.419 hybrid contribution 1.925 0.623 -0.780 2.168 sum -0.178 -24.374 -19.698 31.339 Atomic orbital electron populations 1.70040 1.05190 1.25385 1.54054 1.25028 0.95303 0.98348 1.01069 0.86237 0.79280 0.84051 0.77282 1.20345 1.21602 1.21713 1.19228 0.92592 0.84782 1.41577 0.91607 1.44129 1.34157 1.01242 1.52350 1.20973 0.97849 0.86508 0.92539 1.22625 0.89256 0.99517 0.96894 1.61874 1.34678 1.05777 1.23105 1.22207 0.94938 0.97040 0.94334 1.21449 0.98330 0.90809 0.89651 1.45827 1.11136 1.41539 1.38915 1.17739 0.84046 0.81969 0.80937 1.90838 1.29136 1.53740 1.66705 1.20677 0.95287 1.02517 1.02030 1.22729 0.96528 0.88896 0.91300 1.66391 1.29663 1.15897 1.07711 1.19150 0.92325 0.93656 0.93021 1.42906 1.12084 1.33902 1.31362 0.72884 1.25589 0.79136 0.97320 0.99051 1.70531 1.31371 1.10053 1.07812 1.19576 0.90977 1.01389 1.00762 1.20900 0.99191 0.89844 0.87845 1.23012 0.98864 0.89185 0.98773 1.20873 0.89000 0.96596 0.88410 0.93637 0.95600 0.92573 0.91952 0.95331 0.90767 0.94885 0.90718 0.90051 0.76808 0.81285 0.75537 0.82431 0.95569 0.91703 0.95407 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.15 55.49 0.62 -25.75 16 2 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.73 29.59 -169.99 -5.03 16.71 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.94 9.63 -15.06 -0.15 -7.09 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.03 3.04 -172.02 -0.52 -15.55 16 10 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 11 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 12 N -0.53 -8.94 4.63 -234.32 -1.08 -10.03 16 13 C 0.04 0.55 5.08 -3.82 -0.02 0.53 16 14 C 0.12 1.51 5.61 -4.04 -0.02 1.49 16 15 N -0.72 -7.12 5.51 -61.30 -0.34 -7.46 16 16 C 0.57 6.74 7.77 -12.40 -0.10 6.64 16 17 O -0.53 -8.43 16.40 5.30 0.09 -8.34 16 18 C -0.20 -1.94 5.89 -104.85 -0.62 -2.56 16 19 C 0.17 1.40 10.69 -17.09 -0.18 1.22 16 20 N -0.48 -4.42 10.36 -11.96 -0.12 -4.54 16 21 C 0.26 2.28 8.45 -155.63 -1.31 0.96 16 22 N -0.59 -2.89 6.20 -13.22 -0.08 -2.97 16 23 H 0.43 0.67 8.96 -40.82 -0.37 0.31 16 24 C 0.28 1.28 12.97 -89.71 -1.16 0.11 16 25 N -0.48 -4.40 11.29 -12.02 -0.14 -4.53 16 26 C -0.01 -0.08 7.23 -84.69 -0.61 -0.69 16 27 C 0.05 0.53 9.75 -38.58 -0.38 0.15 16 28 C 0.03 0.59 5.46 -3.70 -0.02 0.57 16 29 C 0.18 4.28 5.42 -3.60 -0.02 4.26 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 33 H 0.06 0.89 7.99 -51.93 -0.41 0.48 16 34 H 0.03 0.50 8.14 -51.94 -0.42 0.08 16 35 H 0.07 0.79 7.97 -51.93 -0.41 0.38 16 36 H 0.03 0.40 8.12 -51.93 -0.42 -0.03 16 37 H 0.07 1.07 6.40 -51.93 -0.33 0.73 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.40 2.57 6.51 -40.82 -0.27 2.31 16 40 H 0.17 0.79 6.39 -52.49 -0.34 0.45 16 41 H 0.23 -0.18 8.06 -52.49 -0.42 -0.60 16 42 H 0.16 1.69 7.72 -52.48 -0.41 1.29 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 1.15 6.16 -51.93 -0.32 0.83 16 45 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 2.38 6.12 -51.93 -0.32 2.07 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -36.63 375.93 -11.76 -48.38 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.09 Total: -0.97 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: -4.72 Total: 9.39 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.67 Total: -70.84 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.09 Total: -8.34 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.63 -11.76 -48.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490493638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.903 kcal (2) G-P(sol) polarization free energy of solvation -36.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds