Wall clock time and date at job start Wed Apr 1 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48503 * 109.46646 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46973 * 299.99403 * 3 2 1 6 6 H 1.48493 * 109.47407 * 59.99827 * 3 2 1 7 7 C 1.38810 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99913 * 197.03265 * 7 2 1 9 9 N 1.36935 * 119.99739 * 17.02657 * 7 2 1 10 10 C 1.47081 * 120.88008 * 206.58072 * 9 7 2 11 11 C 1.53244 * 108.51987 * 231.16929 * 10 9 7 12 12 N 1.46899 * 109.33800 * 306.16798 * 11 10 9 13 13 C 1.46903 * 111.00119 * 187.25539 * 12 11 10 14 14 C 1.52999 * 109.47244 * 170.00032 * 13 12 11 15 15 N 1.46495 * 109.47079 * 179.97438 * 14 13 12 16 16 C 1.34782 * 120.00240 * 179.97438 * 15 14 13 17 17 O 1.21573 * 119.99592 * 0.02562 * 16 15 14 18 18 C 1.47682 * 120.00101 * 180.02562 * 16 15 14 19 19 C 1.39980 * 120.38812 * 0.02562 * 18 16 15 20 20 N 1.31381 * 121.16228 * 180.02562 * 19 18 16 21 21 C 1.32548 * 121.79366 * 359.97438 * 20 19 18 22 22 N 1.37586 * 133.56463 * 180.02562 * 21 20 19 23 23 H 0.96994 * 126.23603 * 0.02562 * 22 21 20 24 24 C 1.36166 * 107.51954 * 180.02562 * 22 21 20 25 25 N 1.30058 * 110.11742 * 359.97438 * 24 22 21 26 26 C 1.35783 * 109.43172 * 0.02562 * 25 24 22 27 27 C 1.39486 * 133.74405 * 179.97438 * 26 25 24 28 28 C 1.46904 * 111.26836 * 63.10706 * 12 11 10 29 29 C 1.47079 * 120.88278 * 26.56315 * 9 7 2 30 30 H 0.97004 * 120.00020 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.62805 * 111.45820 * 10 9 7 32 32 H 1.08998 * 109.78857 * 350.96887 * 10 9 7 33 33 H 1.09003 * 109.49170 * 186.21471 * 11 10 9 34 34 H 1.08988 * 109.49632 * 66.12915 * 11 10 9 35 35 H 1.08998 * 109.46983 * 50.00535 * 13 12 11 36 36 H 1.09001 * 109.47158 * 290.00048 * 13 12 11 37 37 H 1.09004 * 109.46917 * 59.99915 * 14 13 12 38 38 H 1.09001 * 109.47056 * 300.00078 * 14 13 12 39 39 H 0.96999 * 120.00230 * 0.02562 * 15 14 13 40 40 H 1.08000 * 119.41928 * 359.74019 * 19 18 16 41 41 H 1.08000 * 124.94091 * 179.97438 * 24 22 21 42 42 H 1.08004 * 120.97385 * 359.97438 * 27 26 25 43 43 H 1.08996 * 109.49319 * 56.85593 * 28 12 11 44 44 H 1.09003 * 109.49006 * 176.93276 * 28 12 11 45 45 H 1.08995 * 109.62795 * 248.54505 * 29 9 7 46 46 H 1.09004 * 109.62803 * 9.12166 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2225 0.2745 9 7 1.3706 -2.3622 -0.3462 10 6 1.8309 -3.6609 0.1683 11 6 2.0025 -4.6199 -1.0146 12 7 0.7550 -4.6654 -1.7889 13 6 0.8187 -5.7004 -2.8295 14 6 -0.5688 -5.8901 -3.4457 15 7 -0.5052 -6.9218 -4.4838 16 6 -1.6167 -7.2597 -5.1672 17 8 -2.6720 -6.7080 -4.9223 18 6 -1.5526 -8.3002 -6.2133 19 6 -0.3419 -8.9410 -6.5014 20 7 -0.2675 -9.8682 -7.4291 21 6 -1.3281 -10.2396 -8.1321 22 7 -1.5260 -11.1602 -9.1352 23 1 -0.8515 -11.7396 -9.5229 24 6 -2.8411 -11.1097 -9.4843 25 7 -3.4615 -10.2223 -8.7638 26 6 -2.5834 -9.6442 -7.9045 27 6 -2.6992 -8.6555 -6.9274 28 6 0.4404 -3.3533 -2.3699 29 6 0.2047 -2.3425 -1.2427 30 1 -0.4850 0.8401 -0.0004 31 1 1.0920 -4.0629 0.8614 32 1 2.7849 -3.5375 0.6810 33 1 2.2365 -5.6176 -0.6430 34 1 2.8138 -4.2693 -1.6523 35 1 1.1515 -6.6396 -2.3878 36 1 1.5215 -5.3939 -3.6043 37 1 -0.9018 -4.9508 -3.8873 38 1 -1.2716 -6.1966 -2.6709 39 1 0.3367 -7.3623 -4.6788 40 1 0.5476 -8.6651 -5.9545 41 1 -3.3020 -11.7181 -10.2484 42 1 -3.6477 -8.1787 -6.7287 43 1 1.2735 -3.0204 -2.9889 44 1 -0.4586 -3.4325 -2.9813 45 1 -0.6905 -2.6177 -0.6852 46 1 0.0843 -1.3447 -1.6648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490493638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:19 Heat of formation + Delta-G solvation = 65.734588 kcal Electronic energy + Delta-G solvation = -28580.552832 eV Core-core repulsion = 24506.046315 eV Total energy + Delta-G solvation = -4074.506517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.44927 -41.09444 -39.75260 -38.97686 -36.87598 -35.49824 -34.79062 -33.35308 -32.50689 -31.62345 -31.31243 -29.95274 -27.67504 -25.62824 -24.95487 -24.70762 -24.20364 -22.88272 -22.58552 -21.78770 -20.80422 -19.78235 -19.15060 -18.68511 -18.08729 -17.43598 -17.01650 -16.90239 -16.57683 -16.52122 -15.96210 -15.75057 -15.49392 -15.28151 -15.10045 -15.04442 -14.87045 -14.77255 -14.38724 -14.22540 -14.10265 -13.68097 -13.19577 -12.99400 -12.80347 -12.63203 -12.54686 -12.31693 -12.22732 -12.18586 -12.00626 -11.83459 -11.53383 -11.45036 -11.28349 -10.58889 -10.41389 -10.28539 -9.96939 -9.73923 -9.26388 -8.67073 -7.86598 -5.31287 -0.48416 -0.28763 1.46310 1.47825 1.50174 1.58583 1.64973 1.79978 1.89334 2.51460 2.69762 2.97238 3.14437 3.29089 3.32478 3.55859 3.63255 3.70155 3.73876 3.88371 4.10673 4.16141 4.25188 4.33004 4.38472 4.51126 4.58603 4.65421 4.68403 4.74399 4.80155 4.86883 4.91291 4.97142 5.03366 5.08333 5.23450 5.28038 5.32769 5.40143 5.62606 5.70143 6.10698 6.16986 6.26673 6.38431 6.44186 6.58268 6.67790 7.11498 7.14134 7.85596 8.39497 9.20328 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.029256 B = 0.001674 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.833975 B =16720.402354 C =17097.471037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.614 5.614 10 C 0.140 3.860 11 C 0.059 3.941 12 N -0.543 5.543 13 C 0.053 3.947 14 C 0.129 3.871 15 N -0.702 5.702 16 C 0.569 3.431 17 O -0.578 6.578 18 C -0.200 4.200 19 C 0.181 3.819 20 N -0.489 5.489 21 C 0.244 3.756 22 N -0.573 5.573 23 H 0.449 0.551 24 C 0.306 3.694 25 N -0.529 5.529 26 C -0.027 4.027 27 C 0.030 3.970 28 C 0.050 3.950 29 C 0.184 3.816 30 H 0.249 0.751 31 H 0.014 0.986 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.029 0.971 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.205 0.795 41 H 0.282 0.718 42 H 0.141 0.859 43 H 0.024 0.976 44 H 0.076 0.924 45 H -0.005 1.005 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -28.188 -21.125 35.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.338 5.338 10 C 0.015 3.985 11 C -0.070 4.070 12 N -0.269 5.269 13 C -0.075 4.075 14 C 0.004 3.996 15 N -0.355 5.355 16 C 0.356 3.644 17 O -0.458 6.458 18 C -0.209 4.209 19 C 0.011 3.989 20 N -0.202 5.202 21 C 0.006 3.994 22 N -0.189 5.189 23 H 0.292 0.708 24 C 0.018 3.982 25 N -0.249 5.249 26 C -0.146 4.146 27 C 0.002 3.998 28 C -0.080 4.080 29 C 0.058 3.942 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.048 0.952 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.256 0.744 40 H 0.222 0.778 41 H 0.297 0.703 42 H 0.159 0.841 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.013 0.987 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.525 -27.993 -20.846 34.907 hybrid contribution 1.083 1.380 -0.234 1.770 sum 1.608 -26.613 -21.080 33.988 Atomic orbital electron populations 1.70209 1.06751 1.25740 1.55693 1.25818 0.96045 1.01590 1.01490 0.85193 0.78664 0.79807 0.76697 1.18866 1.21807 1.22007 1.19593 0.92960 0.85949 1.40634 0.91200 1.44416 1.34117 1.02305 1.53001 1.21178 0.97522 0.85503 0.94329 1.22465 0.89087 1.00276 0.95197 1.61740 1.35055 1.05223 1.24839 1.22218 0.94858 0.96723 0.93746 1.21194 0.98264 0.90495 0.89603 1.45553 1.11634 1.40650 1.37701 1.18039 0.83608 0.81750 0.80962 1.90815 1.31090 1.55614 1.68269 1.20485 0.96068 1.02550 1.01749 1.23190 0.96677 0.88011 0.90996 1.66518 1.29506 1.16151 1.07994 1.19434 0.91814 0.94310 0.93795 1.42983 1.12799 1.33046 1.30088 0.70764 1.26692 0.78547 0.95245 0.97703 1.70525 1.32536 1.12377 1.09450 1.19721 0.92149 1.01669 1.01095 1.20902 0.99074 0.90793 0.89033 1.22611 0.99393 0.89465 0.96504 1.20611 0.87863 0.96388 0.89383 0.94161 0.96768 0.91891 0.87966 0.95226 0.87545 0.93141 0.92824 0.91764 0.74380 0.77813 0.70277 0.84104 0.95767 0.90580 0.98650 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.95 11.15 21.65 0.24 -56.71 16 2 C -0.05 -3.09 4.94 84.86 0.42 -2.67 16 3 Si 0.97 45.45 29.59 68.60 2.03 47.48 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 7 C -0.26 -14.55 9.63 84.03 0.81 -13.74 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -31.49 3.04 -698.13 -2.12 -33.61 16 10 C 0.14 5.77 6.69 86.35 0.58 6.35 16 11 C 0.06 1.84 5.62 86.39 0.49 2.32 16 12 N -0.54 -17.32 4.63 -895.25 -4.14 -21.47 16 13 C 0.05 1.13 5.08 86.30 0.44 1.57 16 14 C 0.13 3.05 5.61 86.38 0.48 3.54 16 15 N -0.70 -12.60 5.51 -466.13 -2.57 -15.16 16 16 C 0.57 13.52 7.77 86.74 0.67 14.20 16 17 O -0.58 -19.39 16.40 -3.95 -0.06 -19.46 16 18 C -0.20 -3.91 5.89 -20.01 -0.12 -4.03 16 19 C 0.18 2.53 10.69 85.18 0.91 3.44 16 20 N -0.49 -7.89 10.36 -191.77 -1.99 -9.88 16 21 C 0.24 3.96 8.45 133.90 1.13 5.09 16 22 N -0.57 -4.02 6.20 -195.73 -1.21 -5.23 16 23 H 0.45 -0.15 8.96 -92.71 -0.83 -0.98 16 24 C 0.31 1.93 12.97 180.03 2.33 4.26 16 25 N -0.53 -9.26 11.29 -191.94 -2.17 -11.43 16 26 C -0.03 -0.55 7.23 39.46 0.29 -0.27 16 27 C 0.03 0.67 9.75 22.92 0.22 0.89 16 28 C 0.05 1.90 5.46 86.38 0.47 2.37 16 29 C 0.18 9.22 5.42 86.35 0.47 9.69 16 30 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 33 H 0.10 2.44 7.99 -2.39 -0.02 2.43 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 1.71 7.97 -2.39 -0.02 1.69 16 36 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.05 1.52 6.40 -2.39 -0.02 1.51 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.42 3.95 6.51 -92.71 -0.60 3.34 16 40 H 0.21 1.14 6.39 -2.91 -0.02 1.12 16 41 H 0.28 -1.77 8.06 -2.91 -0.02 -1.79 16 42 H 0.14 3.45 7.72 -2.91 -0.02 3.43 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.08 2.72 6.16 -2.39 -0.01 2.71 16 45 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.05 3.08 6.12 -2.38 -0.01 3.07 16 Total: -1.00 -85.23 375.93 -2.79 -88.02 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -0.39 Total: 4.45 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 9.59 Total: 33.02 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -13.96 Total: -153.50 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.06 Total: -19.46 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -85.23 -2.79 -88.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490493638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.754 kcal (2) G-P(sol) polarization free energy of solvation -85.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds