Wall clock time and date at job start Wed Apr 1 2020 04:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48500 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46731 * 299.99416 * 3 2 1 6 6 H 1.48490 * 109.47149 * 59.99927 * 3 2 1 7 7 C 1.38813 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00082 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46731 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.50113 * 305.06151 * 11 10 9 13 13 C 1.53051 * 109.49507 * 185.00139 * 11 10 9 14 14 C 1.53037 * 109.53431 * 178.65016 * 13 11 10 15 15 C 1.53195 * 109.31425 * 61.36823 * 14 13 11 16 16 N 1.46924 * 108.77386 * 305.35880 * 15 14 13 17 17 C 1.34775 * 120.63197 * 233.58583 * 16 15 14 18 18 O 1.21282 * 120.00272 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99856 * 0.02562 * 17 16 15 20 20 C 1.50702 * 109.46816 * 180.02562 * 19 17 16 21 21 N 1.32611 * 125.18333 * 270.25650 * 20 19 17 22 22 C 1.32824 * 109.75743 * 180.15544 * 21 20 19 23 23 N 1.33824 * 132.50539 * 179.97438 * 22 21 20 24 24 C 1.31343 * 120.86758 * 179.68207 * 23 22 21 25 25 C 1.40051 * 120.31272 * 0.02562 * 24 23 22 26 26 C 1.35785 * 119.23611 * 359.97178 * 25 24 23 27 27 N 1.35975 * 119.02361 * 0.02562 * 26 25 24 28 28 N 1.31185 * 125.18858 * 90.00078 * 20 19 17 29 29 C 1.46926 * 118.73880 * 53.86226 * 16 15 14 30 30 H 0.97002 * 119.99615 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00005 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.46946 * 60.00400 * 10 9 7 33 33 H 1.08999 * 109.46894 * 299.99680 * 10 9 7 34 34 H 1.08993 * 109.45973 * 58.62934 * 13 11 10 35 35 H 1.09000 * 109.44432 * 298.66210 * 13 11 10 36 36 H 1.08998 * 109.50341 * 301.41325 * 14 13 11 37 37 H 1.09012 * 109.49348 * 181.31492 * 14 13 11 38 38 H 1.08999 * 109.58633 * 185.57379 * 15 14 13 39 39 H 1.08992 * 109.70382 * 65.21645 * 15 14 13 40 40 H 1.08996 * 109.47155 * 59.99773 * 19 17 16 41 41 H 1.08999 * 109.46836 * 299.99735 * 19 17 16 42 42 H 1.08002 * 119.84952 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.37764 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.48328 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58508 * 65.92385 * 29 16 15 46 46 H 1.08997 * 109.58814 * 186.35439 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.3784 -4.7128 0.8407 13 6 1.8242 -6.1419 0.1257 14 6 0.8285 -7.3036 0.1590 15 6 0.0324 -7.3263 -1.1497 16 7 -0.5849 -6.0082 -1.3506 17 6 -1.9103 -5.8966 -1.5679 18 8 -2.4079 -4.8028 -1.7318 19 6 -2.7741 -7.1309 -1.6061 20 6 -4.2052 -6.7346 -1.8633 21 7 -5.0978 -6.4442 -0.9265 22 6 -6.2601 -6.1399 -1.4927 23 7 -7.4470 -5.7849 -0.9866 24 6 -8.4648 -5.5239 -1.7746 25 6 -8.3235 -5.6140 -3.1651 26 6 -7.1229 -5.9735 -3.6878 27 7 -6.0889 -6.2372 -2.8451 28 7 -4.7566 -6.6197 -3.0481 29 6 0.2712 -4.8146 -1.3161 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8895 34 1 2.4090 -6.1384 1.0454 35 1 2.4912 -6.2596 -0.7284 36 1 0.1453 -7.1734 0.9982 37 1 1.3695 -8.2433 0.2720 38 1 -0.7445 -8.0886 -1.0916 39 1 0.7001 -7.5478 -1.9822 40 1 -2.7068 -7.6512 -0.6507 41 1 -2.4311 -7.7899 -2.4037 42 1 -9.4154 -5.2392 -1.3485 43 1 -9.1598 -5.4001 -3.8140 44 1 -6.9914 -6.0490 -4.7571 45 1 0.9599 -4.8344 -2.1607 46 1 -0.3481 -3.9192 -1.3678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491186635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:49 Heat of formation + Delta-G solvation = 118.140514 kcal Electronic energy + Delta-G solvation = -29433.719232 eV Core-core repulsion = 25361.485206 eV Total energy + Delta-G solvation = -4072.234026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.14302 -40.19015 -39.06178 -37.51345 -34.89989 -34.84722 -33.06339 -32.49271 -31.64026 -30.96038 -30.11012 -29.27790 -25.57323 -25.43106 -24.83697 -23.97867 -23.10690 -21.78090 -21.29202 -20.04099 -18.95738 -18.69250 -18.31556 -17.45182 -16.92956 -16.65431 -16.49108 -15.80507 -15.40397 -14.89250 -14.69761 -14.55292 -14.14361 -13.91662 -13.70520 -13.50912 -13.40143 -13.18000 -12.93062 -12.88963 -12.88240 -12.55916 -12.34995 -12.19521 -12.11620 -11.46037 -11.05442 -10.98337 -10.80644 -10.61506 -10.38291 -10.34507 -10.29425 -10.24927 -10.03113 -9.91459 -9.60828 -9.51731 -9.07016 -8.81113 -8.47590 -6.83384 -5.66191 -2.96107 0.10020 0.41911 1.60273 2.20073 2.70702 2.88811 3.11048 3.23618 3.49190 3.53704 3.56824 3.61027 3.92356 4.17080 4.44752 4.48578 4.63140 4.65030 4.75382 4.90629 4.91694 5.01566 5.04871 5.10330 5.24896 5.36753 5.43688 5.47813 5.66871 5.68225 5.83138 5.84856 5.87705 5.94144 5.97423 6.00596 6.14387 6.18110 6.25614 6.44146 6.59180 6.67244 6.82306 6.93741 7.13137 7.48616 7.69659 7.77960 8.27310 8.51174 9.62134 10.20784 10.54800 11.56056 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.002693 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.544330 B =10396.380849 C =12646.404017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.108 4.108 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.134 4.134 15 C 0.105 3.895 16 N -0.610 5.610 17 C 0.519 3.481 18 O -0.519 6.519 19 C -0.051 4.051 20 C 0.300 3.700 21 N -0.509 5.509 22 C 0.443 3.557 23 N -0.452 5.452 24 C 0.204 3.796 25 C -0.226 4.226 26 C 0.174 3.826 27 N -0.326 5.326 28 N -0.322 5.322 29 C 0.122 3.878 30 H 0.254 0.746 31 H 0.385 0.615 32 H 0.022 0.978 33 H 0.019 0.981 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.191 0.809 43 H 0.175 0.825 44 H 0.182 0.818 45 H 0.067 0.933 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 -22.542 -7.795 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.127 4.127 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.173 4.173 15 C -0.019 4.019 16 N -0.344 5.344 17 C 0.305 3.695 18 O -0.394 6.394 19 C -0.094 4.094 20 C 0.019 3.981 21 N -0.240 5.240 22 C 0.083 3.917 23 N -0.166 5.166 24 C 0.018 3.982 25 C -0.252 4.252 26 C 0.036 3.964 27 N -0.105 5.105 28 N -0.153 5.153 29 C 0.001 3.999 30 H 0.064 0.936 31 H 0.219 0.781 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.145 0.855 41 H 0.140 0.860 42 H 0.207 0.793 43 H 0.192 0.808 44 H 0.199 0.801 45 H 0.085 0.915 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -13.517 -22.006 -7.184 26.806 hybrid contribution -0.047 1.041 -0.894 1.373 sum -13.564 -20.964 -8.078 26.244 Atomic orbital electron populations 1.69696 1.05057 1.25461 1.57489 1.24772 0.95486 0.97685 1.03088 0.86136 0.78715 0.84317 0.77142 1.20596 1.21923 1.21918 1.19246 0.90975 0.84182 1.42796 0.91178 1.42436 1.05982 0.99972 1.89434 1.20633 0.92969 0.85201 0.97954 1.21777 0.97990 0.95121 0.97825 0.90677 1.21521 0.97464 0.93734 1.02320 1.21921 0.98706 0.99189 0.97448 1.21792 0.97598 0.84242 0.98223 1.48107 1.06617 1.08336 1.71320 1.19977 0.82219 0.90011 0.77342 1.90821 1.72456 1.28002 1.48071 1.20094 0.84752 0.98218 1.06300 1.23513 0.96205 0.92907 0.85480 1.70683 0.97122 1.25682 1.30509 1.22717 0.93764 0.96612 0.78653 1.68009 0.96338 1.15157 1.37088 1.23594 0.96840 0.87810 0.89974 1.21955 0.97896 1.07597 0.97704 1.22168 0.84218 0.92031 0.98005 1.48759 1.09600 1.42894 1.09211 1.78508 0.86117 1.29509 1.21174 1.21826 0.93134 0.87843 0.97126 0.93571 0.78073 0.96051 0.96296 0.91480 0.91754 0.91293 0.90785 0.90098 0.91060 0.85450 0.85993 0.79256 0.80808 0.80051 0.91516 0.87903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.83 13.06 55.49 0.72 -29.11 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 6 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.19 16 8 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 9 N -0.73 -19.55 5.38 -59.91 -0.32 -19.88 16 10 C 0.16 3.31 5.65 -4.04 -0.02 3.29 16 11 C -0.11 -1.80 2.38 -90.27 -0.22 -2.02 16 12 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.11 -1.36 5.17 -26.69 -0.14 -1.50 16 14 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 15 C 0.10 0.98 6.34 -3.71 -0.02 0.95 16 16 N -0.61 -8.70 2.97 -172.50 -0.51 -9.21 16 17 C 0.52 8.48 7.69 -10.98 -0.08 8.39 16 18 O -0.52 -11.46 15.45 5.56 0.09 -11.38 16 19 C -0.05 -0.62 4.67 -29.03 -0.14 -0.75 16 20 C 0.30 4.69 6.59 -157.01 -1.03 3.66 16 21 N -0.51 -8.85 11.25 -11.80 -0.13 -8.98 16 22 C 0.44 6.80 8.99 -323.13 -2.91 3.89 16 23 N -0.45 -5.70 10.48 -13.82 -0.14 -5.85 16 24 C 0.20 1.36 11.27 -17.08 -0.19 1.17 16 25 C -0.23 -1.04 10.07 -39.78 -0.40 -1.44 16 26 C 0.17 1.32 11.32 -16.59 -0.19 1.13 16 27 N -0.33 -4.31 3.91 -13.84 -0.05 -4.36 16 28 N -0.32 -4.89 12.78 32.39 0.41 -4.48 16 29 C 0.12 2.12 5.55 -3.48 -0.02 2.10 16 30 H 0.25 7.89 8.31 -40.82 -0.34 7.55 16 31 H 0.39 11.07 6.91 -40.82 -0.28 10.79 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.08 0.53 5.93 -51.93 -0.31 0.22 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.13 1.21 7.69 -51.93 -0.40 0.81 16 41 H 0.12 1.03 7.94 -51.93 -0.41 0.62 16 42 H 0.19 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.17 0.00 8.06 -52.49 -0.42 -0.42 16 44 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 2.28 6.23 -51.93 -0.32 1.96 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -42.74 381.70 -11.33 -54.06 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.35 Total: 5.38 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: -5.77 Total: 9.73 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -0.03 Total: -81.87 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -42.74 -11.33 -54.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491186635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.205 kcal (2) G-P(sol) polarization free energy of solvation -42.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds