Wall clock time and date at job start Wed Apr 1 2020 04:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 120.00036 * 2 1 4 4 H 1.48500 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46731 * 299.99416 * 3 2 1 6 6 H 1.48490 * 109.47149 * 59.99927 * 3 2 1 7 7 C 1.38813 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99614 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00203 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00082 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46731 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.50113 * 305.06151 * 11 10 9 13 13 C 1.53051 * 109.49507 * 185.00139 * 11 10 9 14 14 C 1.53037 * 109.53431 * 178.65016 * 13 11 10 15 15 C 1.53195 * 109.31425 * 61.36823 * 14 13 11 16 16 N 1.46924 * 108.77386 * 305.35880 * 15 14 13 17 17 C 1.34775 * 120.63197 * 233.58583 * 16 15 14 18 18 O 1.21282 * 120.00272 * 179.97438 * 17 16 15 19 19 C 1.50704 * 119.99856 * 0.02562 * 17 16 15 20 20 C 1.50702 * 109.46816 * 180.02562 * 19 17 16 21 21 N 1.32611 * 125.18333 * 270.25650 * 20 19 17 22 22 C 1.32824 * 109.75743 * 180.15544 * 21 20 19 23 23 N 1.33824 * 132.50539 * 179.97438 * 22 21 20 24 24 C 1.31343 * 120.86758 * 179.68207 * 23 22 21 25 25 C 1.40051 * 120.31272 * 0.02562 * 24 23 22 26 26 C 1.35785 * 119.23611 * 359.97178 * 25 24 23 27 27 N 1.35975 * 119.02361 * 0.02562 * 26 25 24 28 28 N 1.31185 * 125.18858 * 90.00078 * 20 19 17 29 29 C 1.46926 * 118.73880 * 53.86226 * 16 15 14 30 30 H 0.97002 * 119.99615 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00005 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.46946 * 60.00400 * 10 9 7 33 33 H 1.08999 * 109.46894 * 299.99680 * 10 9 7 34 34 H 1.08993 * 109.45973 * 58.62934 * 13 11 10 35 35 H 1.09000 * 109.44432 * 298.66210 * 13 11 10 36 36 H 1.08998 * 109.50341 * 301.41325 * 14 13 11 37 37 H 1.09012 * 109.49348 * 181.31492 * 14 13 11 38 38 H 1.08999 * 109.58633 * 185.57379 * 15 14 13 39 39 H 1.08992 * 109.70382 * 65.21645 * 15 14 13 40 40 H 1.08996 * 109.47155 * 59.99773 * 19 17 16 41 41 H 1.08999 * 109.46836 * 299.99735 * 19 17 16 42 42 H 1.08002 * 119.84952 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.37764 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.48328 * 180.02562 * 26 25 24 45 45 H 1.09004 * 109.58508 * 65.92385 * 29 16 15 46 46 H 1.08997 * 109.58814 * 186.35439 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.3784 -4.7128 0.8407 13 6 1.8242 -6.1419 0.1257 14 6 0.8285 -7.3036 0.1590 15 6 0.0324 -7.3263 -1.1497 16 7 -0.5849 -6.0082 -1.3506 17 6 -1.9103 -5.8966 -1.5679 18 8 -2.4079 -4.8028 -1.7318 19 6 -2.7741 -7.1309 -1.6061 20 6 -4.2052 -6.7346 -1.8633 21 7 -5.0978 -6.4442 -0.9265 22 6 -6.2601 -6.1399 -1.4927 23 7 -7.4470 -5.7849 -0.9866 24 6 -8.4648 -5.5239 -1.7746 25 6 -8.3235 -5.6140 -3.1651 26 6 -7.1229 -5.9735 -3.6878 27 7 -6.0889 -6.2372 -2.8451 28 7 -4.7566 -6.6197 -3.0481 29 6 0.2712 -4.8146 -1.3161 30 1 -0.4850 0.8401 0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.6847 -3.7145 0.8905 33 1 2.6847 -3.7145 -0.8895 34 1 2.4090 -6.1384 1.0454 35 1 2.4912 -6.2596 -0.7284 36 1 0.1453 -7.1734 0.9982 37 1 1.3695 -8.2433 0.2720 38 1 -0.7445 -8.0886 -1.0916 39 1 0.7001 -7.5478 -1.9822 40 1 -2.7068 -7.6512 -0.6507 41 1 -2.4311 -7.7899 -2.4037 42 1 -9.4154 -5.2392 -1.3485 43 1 -9.1598 -5.4001 -3.8140 44 1 -6.9914 -6.0490 -4.7571 45 1 0.9599 -4.8344 -2.1607 46 1 -0.3481 -3.9192 -1.3678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491186635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:48 Heat of formation + Delta-G solvation = 87.022999 kcal Electronic energy + Delta-G solvation = -29435.068589 eV Core-core repulsion = 25361.485206 eV Total energy + Delta-G solvation = -4073.583382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.01533 -41.36843 -39.87803 -38.80971 -36.63863 -35.66452 -34.60215 -33.46083 -33.07683 -31.83955 -31.58852 -30.45149 -27.24934 -26.51652 -25.62519 -24.92082 -24.76702 -22.81941 -22.59789 -21.35648 -20.03022 -19.50600 -19.19559 -19.12018 -18.42494 -17.57420 -17.25372 -16.85392 -16.72738 -16.53639 -15.80369 -15.50168 -15.46026 -15.36128 -15.00165 -14.76313 -14.40400 -14.16742 -14.10252 -14.05347 -13.80068 -13.77109 -13.67953 -13.22820 -13.11404 -13.03044 -12.90124 -12.66893 -12.14993 -12.03459 -11.94717 -11.82770 -11.56250 -11.39878 -11.31497 -11.05560 -11.03442 -10.99776 -10.62920 -9.93439 -9.67597 -9.04437 -7.97248 -5.28357 -0.51685 -0.36062 0.84478 1.25999 1.42103 1.45028 1.49998 1.55192 1.96652 2.25572 2.38754 2.52908 2.76636 3.32368 3.35685 3.47283 3.51410 3.74805 3.88880 3.92432 3.93391 4.11225 4.14184 4.19456 4.20621 4.34343 4.37762 4.46592 4.52075 4.65193 4.76389 4.82975 4.84099 4.91503 4.93384 4.99856 5.03615 5.06088 5.16639 5.25998 5.35302 5.35922 5.45309 5.50961 5.54095 6.22815 6.34971 6.36551 6.77121 7.07739 7.27798 8.04910 8.26908 9.26578 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.002693 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.544330 B =10396.380849 C =12646.404017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.084 4.084 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.082 0.918 9 N -0.750 5.750 10 C 0.157 3.843 11 C -0.095 4.095 12 H 0.047 0.953 13 C -0.106 4.106 14 C -0.129 4.129 15 C 0.094 3.906 16 N -0.603 5.603 17 C 0.512 3.488 18 O -0.593 6.593 19 C -0.040 4.040 20 C 0.282 3.718 21 N -0.563 5.563 22 C 0.418 3.582 23 N -0.499 5.499 24 C 0.211 3.789 25 C -0.189 4.189 26 C 0.143 3.857 27 N -0.333 5.333 28 N -0.347 5.347 29 C 0.129 3.871 30 H 0.249 0.751 31 H 0.368 0.632 32 H 0.028 0.972 33 H 0.029 0.971 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.239 0.761 43 H 0.234 0.766 44 H 0.215 0.785 45 H 0.075 0.925 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.268 -24.957 -9.014 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.276 4.276 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.100 0.900 9 N -0.393 5.393 10 C 0.030 3.970 11 C -0.115 4.115 12 H 0.066 0.934 13 C -0.144 4.144 14 C -0.167 4.167 15 C -0.026 4.026 16 N -0.335 5.335 17 C 0.299 3.701 18 O -0.473 6.473 19 C -0.081 4.081 20 C 0.000 4.000 21 N -0.297 5.297 22 C 0.058 3.942 23 N -0.215 5.215 24 C 0.028 3.972 25 C -0.213 4.213 26 C 0.007 3.993 27 N -0.112 5.112 28 N -0.180 5.180 29 C 0.006 3.994 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.255 0.745 43 H 0.251 0.749 44 H 0.232 0.768 45 H 0.093 0.907 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.626 -24.501 -8.423 29.273 hybrid contribution -0.198 1.794 -0.579 1.896 sum -13.824 -22.708 -9.002 28.067 Atomic orbital electron populations 1.69906 1.07065 1.25916 1.59714 1.25733 0.96360 1.01694 1.03806 0.84977 0.78355 0.79265 0.76586 1.18332 1.22141 1.22022 1.19745 0.91644 0.85266 1.40879 0.90016 1.42731 1.05494 1.01670 1.89381 1.20874 0.93645 0.84220 0.98228 1.21637 0.96973 0.96597 0.96256 0.93448 1.21521 0.97853 0.91570 1.03467 1.21935 0.98079 0.99649 0.97005 1.22293 0.99106 0.82038 0.99158 1.48202 1.05932 1.09343 1.70069 1.20797 0.82899 0.90452 0.75918 1.90785 1.73924 1.31049 1.51514 1.20228 0.82409 0.96286 1.09187 1.23994 0.97230 0.93306 0.85423 1.70538 0.98703 1.27989 1.32441 1.22918 0.94279 0.97300 0.79681 1.68101 0.96696 1.17779 1.38974 1.24666 0.96855 0.84559 0.91086 1.22694 0.98017 1.03128 0.97412 1.23179 0.83956 0.92720 0.99414 1.48845 1.09782 1.43114 1.09474 1.78295 0.87513 1.30655 1.21495 1.21458 0.92638 0.87426 0.97840 0.94231 0.80024 0.95415 0.95332 0.90725 0.90045 0.92366 0.86602 0.86405 0.88537 0.82783 0.81943 0.74451 0.74923 0.76848 0.90656 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.79 13.06 21.65 0.28 -65.51 16 2 C -0.08 -5.23 5.50 84.86 0.47 -4.77 16 3 Si 0.98 49.18 29.55 68.60 2.03 51.21 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 6 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 7 C -0.24 -14.58 9.99 84.03 0.84 -13.74 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.75 -41.94 5.38 -343.45 -1.85 -43.78 16 10 C 0.16 6.61 5.65 86.38 0.49 7.09 16 11 C -0.09 -3.26 2.38 -10.57 -0.03 -3.29 16 12 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 13 C -0.11 -2.34 5.17 30.62 0.16 -2.18 16 14 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 15 C 0.09 1.47 6.34 86.36 0.55 2.01 16 16 N -0.60 -17.35 2.97 -818.06 -2.43 -19.78 16 17 C 0.51 17.56 7.69 87.66 0.67 18.24 16 18 O -0.59 -28.79 15.45 -3.04 -0.05 -28.84 16 19 C -0.04 -0.95 4.67 29.10 0.14 -0.82 16 20 C 0.28 9.30 6.59 138.69 0.91 10.22 16 21 N -0.56 -21.07 11.25 -191.24 -2.15 -23.22 16 22 C 0.42 13.56 8.99 261.60 2.35 15.91 16 23 N -0.50 -12.80 10.48 -197.63 -2.07 -14.87 16 24 C 0.21 2.30 11.27 85.21 0.96 3.26 16 25 C -0.19 -1.05 10.07 22.14 0.22 -0.83 16 26 C 0.14 1.94 11.32 83.48 0.94 2.89 16 27 N -0.33 -9.08 3.91 -197.70 -0.77 -9.85 16 28 N -0.35 -11.06 12.78 -51.44 -0.66 -11.72 16 29 C 0.13 4.75 5.55 86.51 0.48 5.23 16 30 H 0.25 16.23 8.31 -92.71 -0.77 15.46 16 31 H 0.37 22.84 6.91 -92.71 -0.64 22.20 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.12 1.02 5.93 -2.39 -0.01 1.01 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.15 2.75 7.69 -2.39 -0.02 2.73 16 41 H 0.16 2.41 7.94 -2.39 -0.02 2.39 16 42 H 0.24 -0.04 8.06 -2.91 -0.02 -0.06 16 43 H 0.23 -1.51 8.06 -2.91 -0.02 -1.53 16 44 H 0.21 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 46 H 0.04 2.10 6.23 -2.39 -0.01 2.09 16 Total: -1.00 -107.27 381.70 2.06 -105.22 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.37 Total: 23.75 kcal Atomic # 6 Polarization: 28.05 SS G_CDS: 9.35 Total: 37.40 kcal Atomic # 7 Polarization: -179.09 SS G_CDS: -9.64 Total: -188.73 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.05 Total: -28.84 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Total: -107.27 2.06 -105.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491186635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.238 kcal (2) G-P(sol) polarization free energy of solvation -107.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds